Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Comment[Alternate ID]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Scan Name	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[QC Warning]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABGKN-09A-01R.exon.quantification.txt	3			
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABGKN-09A-01R.gene.quantification.txt	3			
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABGKN-09A-01R.isoform.quantification.txt	3			
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABGKN-09A-01R.fusion.vcf	3			
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABGKN-09A-01R.indel.vcf	3			
TARGET-20-PABGKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABGKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABGKN-09A-01R	RNA	EFO	SRS380281		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABGKN-09A-01R A12482 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12482	SRX1077652	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABGKN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABGKN-09A-01R A12482 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12482.fastq	SRR2083158	@dbgap@:reads/SRP012000/SRS380281/SRX1077652/SRR2083158/SRR2083158.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PABGKN-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHET-03A-02R.exon.quantification.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHET-03A-02R.gene.quantification.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHET-03A-02R.isoform.quantification.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABHET-03A-02R.fusion.vcf	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABHET-03A-02R.indel.vcf	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-03A-02R	RNA	EFO	SRS380431		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHET-03A-02R A12483 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12483	SRX1077697	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHET-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHET-03A-02R A12483 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12483.fastq	SRR2083133	@dbgap@:reads/SRP012000/SRS380431/SRX1077697/SRR2083133/SRR2083133.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PABHET-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_23196.gene.quantification.txt	3			
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_23196_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_23196_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_23196_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_23196_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_23196_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_23196_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_23196_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHET-09A-01R	RNA	EFO	SRS1054357	AML_23196	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHET-09A-01R 1170-SL-0036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0036	SRX1182020		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHET-09A-01R 1170-SL-0036 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHET-09A-01R.fastq	SRR2239653	@dbgap@:reads/SRP012000/SRS1054357/SRX1182020/SRR2239653/SRR2239653.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_23196_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_23350.gene.quantification.txt	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_23350_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_23350_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_23350_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_23350_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_23350_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_23350_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_23350_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-01R	RNA	EFO	SRS1054356	AML_23350	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PABHKY-03A-01R 1170-SL-0037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0037	SRX1182021		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PABHKY-03A-01R 1170-SL-0037 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PABHKY-03A-01R.fastq	SRR2239654	@dbgap@:reads/SRP012000/SRS1054356/SRX1182021/SRR2239654/SRR2239654.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_23350_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHKY-03A-02R.exon.quantification.txt	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHKY-03A-02R.gene.quantification.txt	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABHKY-03A-02R.isoform.quantification.txt	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABHKY-03A-02R.fusion.vcf	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABHKY-03A-02R.indel.vcf	3			
TARGET-20-PABHKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABHKY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABHKY-03A-02R	RNA	EFO	SRS380351		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABHKY-03A-02R A12484 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12484	SRX1077649	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABHKY-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PABHKY-03A-02R A12484 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12484.fastq	SRR2083107	@dbgap@:reads/SRP012000/SRS380351/SRX1077649/SRR2083107/SRR2083107.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PABHKY-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-04A-01R.exon.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-04A-01R.gene.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABLDZ-04A-01R.fusion.vcf	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABLDZ-04A-01R.indel.vcf	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-04A-01R	RNA	EFO	SRS605602		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-04A-01R A32002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32002	SRX543501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PABLDZ-04A-01R A32002 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32002.fastq	SRR1791157	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1791157/SRR1791157.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288115	@dbgap@:reads/SRP012000/SRS605602/SRX543501/SRR1288115/SRR1288115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PABLDZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-09A-04R.exon.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-09A-04R.gene.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PABLDZ-09A-04R.isoform.quantification.txt	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABLDZ-09A-04R.fusion.vcf	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PABLDZ-09A-04R.indel.vcf	3			
TARGET-20-PABLDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PABLDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PABLDZ-09A-04R	RNA	EFO	SRS606818		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PABLDZ-09A-04R A34410 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34410	SRX542519	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PABLDZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PABLDZ-09A-04R A34410 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34410.fastq	SRR1796893	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1796893/SRR1796893.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34410_1_lane_dupsFlagged.bam	SRR1286906	@dbgap@:reads/SRP012000/SRS606818/SRX542519/SRR1286906/SRR1286906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PABLDZ-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PACDZR-09A-02R.exon.quantification.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PACDZR-09A-02R.gene.quantification.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PACDZR-09A-02R.isoform.quantification.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PACDZR-09A-02R.fusion.vcf	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PACDZR-09A-02R.indel.vcf	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PACDZR-09A-02R A12485 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12485	SRX1077656	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PACDZR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PACDZR-09A-02R A12485 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3333-1./A12485.fastq	SRR2083163	@dbgap@:reads/SRP012000/SRS380427/SRX1077656/SRR2083163/SRR2083163.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PACDZR-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_36048.gene.quantification.txt	3			
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_36048_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_36048_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_36048_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_36048_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_36048_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_36048_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_36048_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PACDZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PACDZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PACDZR-09A-02R	RNA	EFO	SRS380427	AML_36048	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PACDZR-09A-02R 1170-SL-0016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0016	SRX1182022		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PACDZR-09A-02R 1170-SL-0016 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PACDZR-09A-02R.fastq	SRR2239655	@dbgap@:reads/SRP012000/SRS380427/SRX1182022/SRR2239655/SRR2239655.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_36048_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADDXZ-03A-02R.exon.quantification.txt	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADDXZ-03A-02R.gene.quantification.txt	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADDXZ-03A-02R.isoform.quantification.txt	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADDXZ-03A-02R.fusion.vcf	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADDXZ-03A-02R.indel.vcf	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADDXZ-03A-02R A12486 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12486	SRX1077648	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADDXZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADDXZ-03A-02R A12486 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12486.fastq	SRR2083182	@dbgap@:reads/SRP012000/SRS380362/SRX1077648/SRR2083182/SRR2083182.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADDXZ-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_51040.gene.quantification.txt	3			
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_51040_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_51040_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_51040_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_51040_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_51040_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_51040_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_51040_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PADDXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADDXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADDXZ-03A-02R	RNA	EFO	SRS380362	AML_51040	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PADDXZ-03A-02R 1170-SL-0041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0041	SRX1182023		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PADDXZ-03A-02R 1170-SL-0041 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PADDXZ-03A-02R.fastq	SRR2239656	@dbgap@:reads/SRP012000/SRS380362/SRX1182023/SRR2239656/SRR2239656.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_51040_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-04A-01R.exon.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-04A-01R.gene.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-04A-01R.isoform.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADYIR-04A-01R.fusion.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADYIR-04A-01R.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-04A-01R	RNA	EFO	SRS605864		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-04A-01R A32017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32017	SRX543478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PADYIR-04A-01R A32017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32017.fastq	SRR1791163	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1791163/SRR1791163.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288121	@dbgap@:reads/SRP012000/SRS605864/SRX543478/SRR1288121/SRR1288121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADYIR-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-09A-01R.exon.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-09A-01R.gene.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADYIR-09A-01R.isoform.quantification.txt	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADYIR-09A-01R.fusion.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADYIR-09A-01R.indel.vcf	3			
TARGET-20-PADYIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADYIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADYIR-09A-01R	RNA	EFO	SRS605653		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADYIR-09A-01R A31940 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31940	SRX542463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADYIR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PADYIR-09A-01R A31940 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31940.fastq	SRR1791131	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1791131/SRR1791131.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31940_1_lane_dupsFlagged.bam	SRR1286908	@dbgap@:reads/SRP012000/SRS605653/SRX542463/SRR1286908/SRR1286908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADYIR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-04A-01R.exon.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-04A-01R.gene.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-04A-01R.isoform.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZCG-04A-01R.fusion.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZCG-04A-01R.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-04A-01R	RNA	EFO	SRS605854		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-04A-01R A32003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32003	SRX543509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PADZCG-04A-01R A32003 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32003.fastq	SRR1791138	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1791138/SRR1791138.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288127	@dbgap@:reads/SRP012000/SRS605854/SRX543509/SRR1288127/SRR1288127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADZCG-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-09A-02R.exon.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-09A-02R.gene.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZCG-09A-02R.isoform.quantification.txt	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZCG-09A-02R.fusion.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZCG-09A-02R.indel.vcf	3			
TARGET-20-PADZCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZCG-09A-02R	RNA	EFO	SRS605634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZCG-09A-02R A31917 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31917	SRX542512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZCG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PADZCG-09A-02R A31917 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31917.fastq	SRR1796914	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1796914/SRR1796914.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31917_1_lane_dupsFlagged.bam	SRR1286858	@dbgap@:reads/SRP012000/SRS605634/SRX542512/SRR1286858/SRR1286858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADZCG-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZKD-09A-02R.exon.quantification.txt	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZKD-09A-02R.gene.quantification.txt	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PADZKD-09A-02R.isoform.quantification.txt	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZKD-09A-02R.fusion.vcf	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PADZKD-09A-02R.indel.vcf	3			
TARGET-20-PADZKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PADZKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PADZKD-09A-02R	RNA	EFO	SRS380307		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PADZKD-09A-02R A12487 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12487	SRX1077685	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PADZKD-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PADZKD-09A-02R A12487 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12487.fastq	SRR2083144	@dbgap@:reads/SRP012000/SRS380307/SRX1077685/SRR2083144/SRR2083144.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PADZKD-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_63761.gene.quantification.txt	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_63761_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_63761_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_63761_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_63761_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_63761_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_63761_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_63761_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-01R	RNA	EFO	SRS1054355	AML_63761	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEAFC-09A-01R 1170-SL-0023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0023	SRX1182024		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEAFC-09A-01R 1170-SL-0023 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEAFC-09A-01R.fastq	SRR2239657	@dbgap@:reads/SRP012000/SRS1054355/SRX1182024/SRR2239657/SRR2239657.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_63761_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAFC-09A-03R.exon.quantification.txt	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAFC-09A-03R.gene.quantification.txt	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAFC-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEAFC-09A-03R.fusion.vcf	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEAFC-09A-03R.indel.vcf	3			
TARGET-20-PAEAFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAFC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAFC-09A-03R	RNA	EFO	SRS380412		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAFC-09A-03R A12488 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12488	SRX1077684	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAFC-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEAFC-09A-03R A12488 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12488.fastq	SRR2083119	@dbgap@:reads/SRP012000/SRS380412/SRX1077684/SRR2083119/SRR2083119.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEAFC-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAKL-09A-03R.exon.quantification.txt	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAKL-09A-03R.gene.quantification.txt	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEAKL-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEAKL-09A-03R.fusion.vcf	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEAKL-09A-03R.indel.vcf	3			
TARGET-20-PAEAKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEAKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEAKL-09A-03R	RNA	EFO	SRS380429		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEAKL-09A-03R A12489 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12489	SRX548850	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEAKL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAEAKL-09A-03R A12489 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12489.fastq	SRR1810645	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1810645/SRR1810645.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294259	@dbgap@:reads/SRP012000/SRS380429/SRX548850/SRR1294259/SRR1294259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEAKL-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECBZ-09A-03R.exon.quantification.txt	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECBZ-09A-03R.gene.quantification.txt	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECBZ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECBZ-09A-03R.fusion.vcf	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECBZ-09A-03R.indel.vcf	3			
TARGET-20-PAECBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECBZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECBZ-09A-03R	RNA	EFO	SRS380374		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECBZ-09A-03R A12490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12490	SRX1077698	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECBZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAECBZ-09A-03R A12490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12490.fastq	SRR2083169	@dbgap@:reads/SRP012000/SRS380374/SRX1077698/SRR2083169/SRR2083169.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAECBZ-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-04A-01R.exon.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-04A-01R.gene.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECCE-04A-01R.fusion.vcf	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECCE-04A-01R.indel.vcf	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-04A-01R	RNA	EFO	SRS605853		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-04A-01R A32016 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32016	SRX543500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAECCE-04A-01R A32016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32016.fastq	SRR1791147	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1791147/SRR1791147.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288113	@dbgap@:reads/SRP012000/SRS605853/SRX543500/SRR1288113/SRR1288113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAECCE-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-09A-01R.exon.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-09A-01R.gene.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAECCE-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECCE-09A-01R.fusion.vcf	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAECCE-09A-01R.indel.vcf	3			
TARGET-20-PAECCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAECCE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAECCE-09A-01R	RNA	EFO	SRS605597		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAECCE-09A-01R A31939 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31939	SRX542489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAECCE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAECCE-09A-01R A31939 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31939.fastq	SRR1796867	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1796867/SRR1796867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31939_1_lane_dupsFlagged.bam	SRR1286914	@dbgap@:reads/SRP012000/SRS605597/SRX542489/SRR1286914/SRR1286914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAECCE-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEDKB-04A-01R.exon.quantification.txt	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEDKB-04A-01R.gene.quantification.txt	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEDKB-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEDKB-04A-01R.fusion.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEDKB-04A-01R.indel.vcf	3			
TARGET-20-PAEDKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEDKB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEDKB-04A-01R	RNA	EFO	SRS605557		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEDKB-04A-01R A32033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32033	SRX543503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEDKB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAEDKB-04A-01R A32033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32033.fastq	SRR1791120	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1791120/SRR1791120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288096	@dbgap@:reads/SRP012000/SRS605557/SRX543503/SRR1288096/SRR1288096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEDKB-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEENN-09A-01R.exon.quantification.txt	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEENN-09A-01R.gene.quantification.txt	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEENN-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEENN-09A-01R.fusion.vcf	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEENN-09A-01R.indel.vcf	3			
TARGET-20-PAEENN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEENN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEENN-09A-01R	RNA	EFO	SRS380295		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEENN-09A-01R A12491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12491	SRX1077687	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEENN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEENN-09A-01R A12491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12491.fastq	SRR2083108	@dbgap@:reads/SRP012000/SRS380295/SRX1077687/SRR2083108/SRR2083108.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEENN-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-04A-01R.exon.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-04A-01R.gene.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEERJ-04A-01R.fusion.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEERJ-04A-01R.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-04A-01R	RNA	EFO	SRS605582		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-04A-01R A32012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32012	SRX543495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEERJ-04A-01R A32012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32012.fastq	SRR1791170	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1791170/SRR1791170.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288119	@dbgap@:reads/SRP012000/SRS605582/SRX543495/SRR1288119/SRR1288119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEERJ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-09A-01R.exon.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-09A-01R.gene.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEERJ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEERJ-09A-01R.fusion.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEERJ-09A-01R.indel.vcf	3			
TARGET-20-PAEERJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEERJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEERJ-09A-01R	RNA	EFO	SRS605662		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEERJ-09A-01R A31934 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31934	SRX542536	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEERJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEERJ-09A-01R A31934 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31934.fastq	SRR1791134	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1791134/SRR1791134.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286881	@dbgap@:reads/SRP012000/SRS605662/SRX542536/SRR1286881/SRR1286881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEERJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEEYP-09A-02R.exon.quantification.txt	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEEYP-09A-02R.gene.quantification.txt	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEEYP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEEYP-09A-02R.fusion.vcf	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEEYP-09A-02R.indel.vcf	3			
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-02R	RNA	EFO	SRS380428		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEEYP-09A-02R A12492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12492	SRX1077625	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEEYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEEYP-09A-02R A12492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12492.fastq	SRR2083127	@dbgap@:reads/SRP012000/SRS380428/SRX1077625/SRR2083127/SRR2083127.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEEYP-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGR-09A-02R.exon.quantification.txt	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGR-09A-02R.gene.quantification.txt	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGR-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGR-09A-02R.fusion.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGR-09A-02R.indel.vcf	3			
TARGET-20-PAEFGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGR-09A-02R	RNA	EFO	SRS605846		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGR-09A-02R A31990 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31990	SRX542475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAEFGR-09A-02R A31990 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31990.fastq	SRR1791123	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1791123/SRR1791123.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286841	@dbgap@:reads/SRP012000/SRS605846/SRX542475/SRR1286841/SRR1286841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEFGR-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-03A-01R.exon.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-03A-01R.gene.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-03A-01R.isoform.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGT-03A-01R.fusion.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGT-03A-01R.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-03A-01R	RNA	EFO	SRS605614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-03A-01R A31918 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31918	SRX542474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAEFGT-03A-01R A31918 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31918.fastq	SRR1796922	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1796922/SRR1796922.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31918_1_lane_dupsFlagged.bam	SRR1286874	@dbgap@:reads/SRP012000/SRS605614/SRX542474/SRR1286874/SRR1286874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEFGT-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-04A-01R.exon.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-04A-01R.gene.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFGT-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGT-04A-01R.fusion.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFGT-04A-01R.indel.vcf	3			
TARGET-20-PAEFGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFGT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFGT-04A-01R	RNA	EFO	SRS605592		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFGT-04A-01R A32004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32004	SRX543502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFGT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEFGT-04A-01R A32004 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32004.fastq	SRR1791125	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1791125/SRR1791125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288122	@dbgap@:reads/SRP012000/SRS605592/SRX543502/SRR1288122/SRR1288122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEFGT-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_66841.gene.quantification.txt	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_66841_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_66841_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_66841_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_66841_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_66841_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_66841_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_66841_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-01R	RNA	EFO	SRS1054354	AML_66841	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAEFHC-09A-01R 1170-SL-0028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0028	SRX1182025		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAEFHC-09A-01R 1170-SL-0028 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAEFHC-09A-01R.fastq	SRR2239658	@dbgap@:reads/SRP012000/SRS1054354/SRX1182025/SRR2239658/SRR2239658.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_66841_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFHC-09A-02R.exon.quantification.txt	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFHC-09A-02R.gene.quantification.txt	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEFHC-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFHC-09A-02R.fusion.vcf	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEFHC-09A-02R.indel.vcf	3			
TARGET-20-PAEFHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEFHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEFHC-09A-02R	RNA	EFO	SRS380402		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEFHC-09A-02R A12493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12493	SRX1077615	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEFHC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEFHC-09A-02R A12493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3337-1./A12493.fastq	SRR2083190	@dbgap@:reads/SRP012000/SRS380402/SRX1077615/SRR2083190/SRR2083190.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEFHC-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRE-03A-02R.exon.quantification.txt	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRE-03A-02R.gene.quantification.txt	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRE-03A-02R.isoform.quantification.txt	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEGRE-03A-02R.fusion.vcf	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEGRE-03A-02R.indel.vcf	3			
TARGET-20-PAEGRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRE-03A-02R	RNA	EFO	SRS380320		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRE-03A-02R A12494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12494	SRX1077681	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRE-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRE-03A-02R A12494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3338-1./A12494.fastq	SRR2083150	@dbgap@:reads/SRP012000/SRS380320/SRX1077681/SRR2083150/SRR2083150.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEGRE-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRI-03A-01R.exon.quantification.txt	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRI-03A-01R.gene.quantification.txt	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEGRI-03A-01R.isoform.quantification.txt	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEGRI-03A-01R.fusion.vcf	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEGRI-03A-01R.indel.vcf	3			
TARGET-20-PAEGRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEGRI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEGRI-03A-01R	RNA	EFO	SRS380381		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEGRI-03A-01R A12495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12495	SRX1077642	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEGRI-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEGRI-03A-01R A12495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3334-1./A12495.fastq	SRR2083164	@dbgap@:reads/SRP012000/SRS380381/SRX1077642/SRR2083164/SRR2083164.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEGRI-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-04A-01R.exon.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-04A-01R.gene.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEIKD-04A-01R.fusion.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEIKD-04A-01R.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-04A-01R	RNA	EFO	SRS605639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-04A-01R A32015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32015	SRX543483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAEIKD-04A-01R A32015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1961-1./A32015.fastq	SRR1791140	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1791140/SRR1791140.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_3_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288100	@dbgap@:reads/SRP012000/SRS605639/SRX543483/SRR1288100/SRR1288100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEIKD-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-09A-01R.exon.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-09A-01R.gene.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEIKD-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEIKD-09A-01R.fusion.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEIKD-09A-01R.indel.vcf	3			
TARGET-20-PAEIKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEIKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEIKD-09A-01R	RNA	EFO	SRS605630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEIKD-09A-01R A31938 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31938	SRX542509	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEIKD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAEIKD-09A-01R A31938 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31938.fastq	SRR1791168	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1791168/SRR1791168.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31938_1_lane_dupsFlagged.bam	SRR1286861	@dbgap@:reads/SRP012000/SRS605630/SRX542509/SRR1286861/SRR1286861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEIKD-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEJBT-09A-02R.exon.quantification.txt	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEJBT-09A-02R.gene.quantification.txt	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAEJBT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEJBT-09A-02R.fusion.vcf	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAEJBT-09A-02R.indel.vcf	3			
TARGET-20-PAEJBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEJBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEJBT-09A-02R	RNA	EFO	SRS380339		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAEJBT-09A-02R A12496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12496	SRX1077707	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAEJBT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAEJBT-09A-02R A12496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12496.fastq	SRR2083126	@dbgap@:reads/SRP012000/SRS380339/SRX1077707/SRR2083126/SRR2083126.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAEJBT-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_73407.gene.quantification.txt	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_73407_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_73407_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_73407_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_73407_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_73407_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_73407_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_73407_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01R	RNA	EFO	SRS1054353	AML_73407	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAERAH-09A-01R 1170-SL-0066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0066	SRX1182026		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAERAH-09A-01R 1170-SL-0066 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAERAH-09A-01R.fastq	SRR2239659	@dbgap@:reads/SRP012000/SRS1054353/SRX1182026/SRR2239659/SRR2239659.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_73407_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAERAH-09A-03R.exon.quantification.txt	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAERAH-09A-03R.gene.quantification.txt	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAERAH-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAERAH-09A-03R.fusion.vcf	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAERAH-09A-03R.indel.vcf	3			
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-03R	RNA	EFO	SRS380405		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAERAH-09A-03R A12497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12497	SRX1077668	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAERAH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAERAH-09A-03R A12497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12497.fastq	SRR2083202	@dbgap@:reads/SRP012000/SRS380405/SRX1077668/SRR2083202/SRR2083202.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAERAH-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAESVN-09A-02R.exon.quantification.txt	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAESVN-09A-02R.gene.quantification.txt	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAESVN-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAESVN-09A-02R.fusion.vcf	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAESVN-09A-02R.indel.vcf	3			
TARGET-20-PAESVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAESVN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAESVN-09A-02R	RNA	EFO	SRS380353		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAESVN-09A-02R A12498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12498	SRX1077635	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAESVN-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAESVN-09A-02R A12498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3329-1./A12498.fastq	SRR2083171	@dbgap@:reads/SRP012000/SRS380353/SRX1077635/SRR2083171/SRR2083171.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAESVN-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-04A-01R.exon.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-04A-01R.gene.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKERZ-04A-01R.fusion.vcf	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKERZ-04A-01R.indel.vcf	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-04A-01R	RNA	EFO	SRS605632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-04A-01R A32014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32014	SRX543477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKERZ-04A-01R A32014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32014.fastq	SRR1791150	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1791150/SRR1791150.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288102	@dbgap@:reads/SRP012000/SRS605632/SRX543477/SRR1288102/SRR1288102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKERZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-09A-01R.exon.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-09A-01R.gene.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKERZ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKERZ-09A-01R.fusion.vcf	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKERZ-09A-01R.indel.vcf	3			
TARGET-20-PAKERZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKERZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKERZ-09A-01R	RNA	EFO	SRS605605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKERZ-09A-01R A31937 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31937	SRX542484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKERZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKERZ-09A-01R A31937 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31937.fastq	SRR1791171	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1791171/SRR1791171.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286882	@dbgap@:reads/SRP012000/SRS605605/SRX542484/SRR1286882/SRR1286882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKERZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKHBF-09A-01R.exon.quantification.txt	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKHBF-09A-01R.gene.quantification.txt	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKHBF-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKHBF-09A-01R.fusion.vcf	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKHBF-09A-01R.indel.vcf	3			
TARGET-20-PAKHBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKHBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKHBF-09A-01R	RNA	EFO	SRS380297		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKHBF-09A-01R A12499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12499	SRX1077678	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKHBF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKHBF-09A-01R A12499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12499.fastq	SRR2083132	@dbgap@:reads/SRP012000/SRS380297/SRX1077678/SRR2083132/SRR2083132.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKHBF-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-04A-01R.exon.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-04A-01R.gene.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIWK-04A-01R.fusion.vcf	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIWK-04A-01R.indel.vcf	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-04A-01R	RNA	EFO	SRS605642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-04A-01R A32001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32001	SRX543488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PAKIWK-04A-01R A32001 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32001.fastq	SRR1791139	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1791139/SRR1791139.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288109	@dbgap@:reads/SRP012000/SRS605642/SRX543488/SRR1288109/SRR1288109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKIWK-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-09A-01R.exon.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-09A-01R.gene.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIWK-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIWK-09A-01R.fusion.vcf	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIWK-09A-01R.indel.vcf	3			
TARGET-20-PAKIWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIWK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIWK-09A-01R	RNA	EFO	SRS605845		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIWK-09A-01R A31915 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31915	SRX542479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIWK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIWK-09A-01R A31915 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2001-1./A31915.fastq	SRR1791128	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1791128/SRR1791128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31915_1_lane_dupsFlagged.bam	SRR1286903	@dbgap@:reads/SRP012000/SRS605845/SRX542479/SRR1286903/SRR1286903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKIWK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIYW-09A-01R.exon.quantification.txt	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIYW-09A-01R.gene.quantification.txt	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKIYW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIYW-09A-01R.fusion.vcf	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKIYW-09A-01R.indel.vcf	3			
TARGET-20-PAKIYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKIYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKIYW-09A-01R	RNA	EFO	SRS605568		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKIYW-09A-01R A31968 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31968	SRX542498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKIYW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKIYW-09A-01R A31968 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31968.fastq	SRR1791124	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1791124/SRR1791124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31968_1_lane_dupsFlagged.bam	SRR1286910	@dbgap@:reads/SRP012000/SRS605568/SRX542498/SRR1286910/SRR1286910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKIYW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKKBK-09A-02R.exon.quantification.txt	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKKBK-09A-02R.gene.quantification.txt	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKKBK-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKKBK-09A-02R.fusion.vcf	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKKBK-09A-02R.indel.vcf	3			
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-02R	RNA	EFO	SRS380450		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKKBK-09A-02R A12500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12500	SRX1077661	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKKBK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKKBK-09A-02R A12500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12500.fastq	SRR2083116	@dbgap@:reads/SRP012000/SRS380450/SRX1077661/SRR2083116/SRR2083116.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKKBK-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKLPD-09A-02R.exon.quantification.txt	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKLPD-09A-02R.gene.quantification.txt	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKLPD-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKLPD-09A-02R.fusion.vcf	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKLPD-09A-02R.indel.vcf	3			
TARGET-20-PAKLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKLPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKLPD-09A-02R	RNA	EFO	SRS380277		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKLPD-09A-02R A12501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12501	SRX548909	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKLPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAKLPD-09A-02R A12501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12501.fastq	SRR1810613	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1810613/SRR1810613.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294238	@dbgap@:reads/SRP012000/SRS380277/SRX548909/SRR1294238/SRR1294238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKLPD-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKRUP-09A-02R.exon.quantification.txt	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKRUP-09A-02R.gene.quantification.txt	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKRUP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKRUP-09A-02R.fusion.vcf	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKRUP-09A-02R.indel.vcf	3			
TARGET-20-PAKRUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKRUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKRUP-09A-02R	RNA	EFO	SRS380317		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKRUP-09A-02R A12502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12502	SRX1077688	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKRUP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKRUP-09A-02R A12502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12502.fastq	SRR2083122	@dbgap@:reads/SRP012000/SRS380317/SRX1077688/SRR2083122/SRR2083122.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKRUP-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKSMZ-03A-02R.exon.quantification.txt	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKSMZ-03A-02R.gene.quantification.txt	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKSMZ-03A-02R.isoform.quantification.txt	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKSMZ-03A-02R.fusion.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKSMZ-03A-02R.indel.vcf	3			
TARGET-20-PAKSMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKSMZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKSMZ-03A-02R	RNA	EFO	SRS605583		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKSMZ-03A-02R A31928 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31928	SRX542499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKSMZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PAKSMZ-03A-02R A31928 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31928.fastq	SRR1791153	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1791153/SRR1791153.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31928_1_lane_dupsFlagged.bam	SRR1286839	@dbgap@:reads/SRP012000/SRS605583/SRX542499/SRR1286839/SRR1286839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKSMZ-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-04A-01R.exon.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-04A-01R.gene.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-04A-01R.isoform.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKTCX-04A-01R.fusion.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKTCX-04A-01R.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-04A-01R	RNA	EFO	SRS605574		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-04A-01R A32009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32009	SRX543510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PAKTCX-04A-01R A32009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1978-1./A32009.fastq	SRR1791142	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1791142/SRR1791142.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288123	@dbgap@:reads/SRP012000/SRS605574/SRX543510/SRR1288123/SRR1288123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKTCX-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-09A-02R.exon.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-09A-02R.gene.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKTCX-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKTCX-09A-02R.fusion.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKTCX-09A-02R.indel.vcf	3			
TARGET-20-PAKTCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKTCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKTCX-09A-02R	RNA	EFO	SRS605591		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKTCX-09A-02R A31927 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31927	SRX542483	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKTCX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKTCX-09A-02R A31927 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31927.fastq	SRR1796865	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1796865/SRR1796865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31927_1_lane_dupsFlagged.bam	SRR1286844	@dbgap@:reads/SRP012000/SRS605591/SRX542483/SRR1286844/SRR1286844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKTCX-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVGI-09A-01R.exon.quantification.txt	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVGI-09A-01R.gene.quantification.txt	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVGI-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKVGI-09A-01R.fusion.vcf	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKVGI-09A-01R.indel.vcf	3			
TARGET-20-PAKVGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVGI-09A-01R	RNA	EFO	SRS605857		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVGI-09A-01R A31911 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31911	SRX542456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVGI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAKVGI-09A-01R A31911 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31911.fastq	SRR1796868	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1796868/SRR1796868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31911_1_lane_dupsFlagged.bam	SRR1286866	@dbgap@:reads/SRP012000/SRS605857/SRX542456/SRR1286866/SRR1286866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKVGI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_709039.gene.quantification.txt	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_709039_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_709039_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_709039_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_709039_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_709039_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_709039_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_709039_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-01R	RNA	EFO	SRS1054352	AML_709039	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAKVYM-09A-01R 1170-SL-0047 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0047	SRX1182027		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAKVYM-09A-01R 1170-SL-0047 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAKVYM-09A-01R.fastq	SRR2239660	@dbgap@:reads/SRP012000/SRS1054352/SRX1182027/SRR2239660/SRR2239660.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_709039_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVYM-09A-02R.exon.quantification.txt	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVYM-09A-02R.gene.quantification.txt	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAKVYM-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKVYM-09A-02R.fusion.vcf	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAKVYM-09A-02R.indel.vcf	3			
TARGET-20-PAKVYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKVYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKVYM-09A-02R	RNA	EFO	SRS380421		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAKVYM-09A-02R A12503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12503	SRX1077690	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAKVYM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAKVYM-09A-02R A12503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3330-1./A12503.fastq	SRR2083166	@dbgap@:reads/SRP012000/SRS380421/SRX1077690/SRR2083166/SRR2083166.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAKVYM-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALBYP-09A-02R.exon.quantification.txt	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALBYP-09A-02R.gene.quantification.txt	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALBYP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALBYP-09A-02R.fusion.vcf	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALBYP-09A-02R.indel.vcf	3			
TARGET-20-PALBYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALBYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALBYP-09A-02R	RNA	EFO	SRS380324		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALBYP-09A-02R A12659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12659	SRX1077692	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALBYP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PALBYP-09A-02R A12659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3380-1./A12659.fastq	SRR2083121	@dbgap@:reads/SRP012000/SRS380324/SRX1077692/SRR2083121/SRR2083121.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALBYP-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALFVW-09A-01R.exon.quantification.txt	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALFVW-09A-01R.gene.quantification.txt	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALFVW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALFVW-09A-01R.fusion.vcf	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALFVW-09A-01R.indel.vcf	3			
TARGET-20-PALFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALFVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALFVW-09A-01R	RNA	EFO	SRS380275		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALFVW-09A-01R A12504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12504	SRX1077709	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALFVW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALFVW-09A-01R A12504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12504.fastq	SRR2083189	@dbgap@:reads/SRP012000/SRS380275/SRX1077709/SRR2083189/SRR2083189.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALFVW-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-04A-01R.exon.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-04A-01R.gene.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-04A-01R.isoform.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALGKX-04A-01R.fusion.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALGKX-04A-01R.indel.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-04A-01R	RNA	EFO	SRS605590		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-04A-01R A32018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32018	SRX543498	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PALGKX-04A-01R A32018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1970-1./A32018.fastq	SRR1791126	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1791126/SRR1791126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_3_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288103	@dbgap@:reads/SRP012000/SRS605590/SRX543498/SRR1288103/SRR1288103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALGKX-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-09A-03R.exon.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-09A-03R.gene.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALGKX-09A-03R.isoform.quantification.txt	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALGKX-09A-03R.fusion.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALGKX-09A-03R.indel.vcf	3			
TARGET-20-PALGKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALGKX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALGKX-09A-03R	RNA	EFO	SRS616781		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALGKX-09A-03R A34411 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34411	SRX548853	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALGKX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PALGKX-09A-03R A34411 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34411.fastq	SRR1796871	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1796871/SRR1796871.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664636	@dbgap@:reads/SRP012000/SRS616781/SRX548853/SRR1664636/SRR1664636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALGKX-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_716200.gene.quantification.txt	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_716200_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_716200_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_716200_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_716200_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_716200_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_716200_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_716200_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-01R	RNA	EFO	SRS1054351	AML_716200	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALHVV-09A-01R 1170-SL-0018 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0018	SRX1182028		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALHVV-09A-01R 1170-SL-0018 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALHVV-09A-01R.fastq	SRR2239661	@dbgap@:reads/SRP012000/SRS1054351/SRX1182028/SRR2239661/SRR2239661.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_716200_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALHVV-09A-02R.exon.quantification.txt	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALHVV-09A-02R.gene.quantification.txt	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALHVV-09A-02R.isoform.quantification.txt	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALHVV-09A-02R.fusion.vcf	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALHVV-09A-02R.indel.vcf	3			
TARGET-20-PALHVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALHVV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALHVV-09A-02R	RNA	EFO	SRS380286		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALHVV-09A-02R A12506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12506	SRX1077653	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALHVV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PALHVV-09A-02R A12506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12506.fastq	SRR2083188	@dbgap@:reads/SRP012000/SRS380286/SRX1077653/SRR2083188/SRR2083188.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALHVV-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_719261.gene.quantification.txt	3			
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_719261_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_719261_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_719261_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_719261_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_719261_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_719261_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_719261_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALNAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALNAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALNAT-09A-01R	RNA	EFO	SRS1054350	AML_719261	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALNAT-09A-01R 1170-SL-0004 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0004	SRX1182029		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALNAT-09A-01R 1170-SL-0004 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALNAT-09A-01R.fastq	SRR2239662	@dbgap@:reads/SRP012000/SRS1054350/SRX1182029/SRR2239662/SRR2239662.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_719261_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_723026.gene.quantification.txt	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_723026_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_723026_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_723026_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_723026_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_723026_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_723026_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_723026_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-01R	RNA	EFO	SRS1054349	AML_723026	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PALVKV-09A-01R 1170-SL-0050 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0050	SRX1182030		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PALVKV-09A-01R 1170-SL-0050 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PALVKV-09A-01R.fastq	SRR2239663	@dbgap@:reads/SRP012000/SRS1054349/SRX1182030/SRR2239663/SRR2239663.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_723026_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALVKV-09A-02R.exon.quantification.txt	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALVKV-09A-02R.gene.quantification.txt	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PALVKV-09A-02R.isoform.quantification.txt	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALVKV-09A-02R.fusion.vcf	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PALVKV-09A-02R.indel.vcf	3			
TARGET-20-PALVKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PALVKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PALVKV-09A-02R	RNA	EFO	SRS380332		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PALVKV-09A-02R A12660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12660	SRX1077651	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PALVKV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PALVKV-09A-02R A12660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12660.fastq	SRR2083157	@dbgap@:reads/SRP012000/SRS380332/SRX1077651/SRR2083157/SRR2083157.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PALVKV-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVKZ-09A-03R.exon.quantification.txt	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVKZ-09A-03R.gene.quantification.txt	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVKZ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMVKZ-09A-03R.fusion.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMVKZ-09A-03R.indel.vcf	3			
TARGET-20-PAMVKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVKZ-09A-03R	RNA	EFO	SRS380360		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVKZ-09A-03R A12507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12507	SRX548905	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVKZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAMVKZ-09A-03R A12507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12507.fastq	SRR1810591	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1810591/SRR1810591.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294241	@dbgap@:reads/SRP012000/SRS380360/SRX548905/SRR1294241/SRR1294241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMVKZ-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVVP-09A-03R.exon.quantification.txt	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVVP-09A-03R.gene.quantification.txt	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMVVP-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMVVP-09A-03R.fusion.vcf	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMVVP-09A-03R.indel.vcf	3			
TARGET-20-PAMVVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMVVP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMVVP-09A-03R	RNA	EFO	SRS380314		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMVVP-09A-03R A12508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12508	SRX1077683	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMVVP-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAMVVP-09A-03R A12508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12508.fastq	SRR2083187	@dbgap@:reads/SRP012000/SRS380314/SRX1077683/SRR2083187/SRR2083187.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMVVP-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-04A-03R.exon.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-04A-03R.gene.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-04A-03R.isoform.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYAS-04A-03R.fusion.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYAS-04A-03R.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-03R	RNA	EFO	SRS605648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-04A-03R A32020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32020	SRX543512	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-04A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAMYAS-04A-03R A32020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32020.fastq	SRR1791136	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1791136/SRR1791136.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288094	@dbgap@:reads/SRP012000/SRS605648/SRX543512/SRR1288094/SRR1288094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMYAS-04A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-09A-03R.exon.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-09A-03R.gene.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYAS-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYAS-09A-03R.fusion.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYAS-09A-03R.indel.vcf	3			
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-03R	RNA	EFO	SRS380291		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYAS-09A-03R A12509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12509	SRX548860	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYAS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAMYAS-09A-03R A12509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12509.fastq	SRR1810625	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1810625/SRR1810625.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294271	@dbgap@:reads/SRP012000/SRS380291/SRX548860/SRR1294271/SRR1294271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMYAS-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYGX-09A-03R.exon.quantification.txt	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYGX-09A-03R.gene.quantification.txt	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYGX-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYGX-09A-03R.fusion.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYGX-09A-03R.indel.vcf	3			
TARGET-20-PAMYGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYGX-09A-03R	RNA	EFO	SRS605659		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYGX-09A-03R A31982 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31982	SRX542482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYGX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PAMYGX-09A-03R A31982 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31982.fastq	SRR1796921	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1796921/SRR1796921.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31982_1_lane_dupsFlagged.bam	SRR1286851	@dbgap@:reads/SRP012000/SRS605659/SRX542482/SRR1286851/SRR1286851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMYGX-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYJX-09A-04R.exon.quantification.txt	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYJX-09A-04R.gene.quantification.txt	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAMYJX-09A-04R.isoform.quantification.txt	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYJX-09A-04R.fusion.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAMYJX-09A-04R.indel.vcf	3			
TARGET-20-PAMYJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYJX-09A-04R	RNA	EFO	SRS606815		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAMYJX-09A-04R A34412 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34412	SRX542494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAMYJX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAMYJX-09A-04R A34412 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	A34412-1..1.fastq	SRR1821182	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1821182/SRR1821182.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_1_withJunctionsOnGenome_dupsFlagged.bam	SRR1664632	@dbgap@:reads/SRP012000/SRS606815/SRX542494/SRR1664632/SRR1664632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAMYJX-09A-04R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_739075.gene.quantification.txt	3			
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_739075_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_739075_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_739075_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_739075_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_739075_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_739075_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_739075_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAMYWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYWW-09A-01R	RNA	EFO	SRS1054348	AML_739075	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAMYWW-09A-01R 1170-SL-0019 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0019	SRX1182031		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAMYWW-09A-01R 1170-SL-0019 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAMYWW-09A-01R.fastq	SRR2239664	@dbgap@:reads/SRP012000/SRS1054348/SRX1182031/SRR2239664/SRR2239664.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_739075_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANAEV-09A-03R.exon.quantification.txt	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANAEV-09A-03R.gene.quantification.txt	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANAEV-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANAEV-09A-03R.fusion.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANAEV-09A-03R.indel.vcf	3			
TARGET-20-PANAEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANAEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANAEV-09A-03R	RNA	EFO	SRS380383		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANAEV-09A-03R A12510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12510	SRX548906	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANAEV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANAEV-09A-03R A12510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12510.fastq	SRR1810640	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1810640/SRR1810640.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294239	@dbgap@:reads/SRP012000/SRS380383/SRX548906/SRR1294239/SRR1294239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANAEV-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_740808.gene.quantification.txt	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_740808_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_740808_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_740808_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_740808_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_740808_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_740808_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_740808_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-01R	RNA	EFO	SRS1054347	AML_740808	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANBWF-09A-01R 1170-SL-0024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0024	SRX1182032		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANBWF-09A-01R 1170-SL-0024 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANBWF-09A-01R.fastq	SRR2239665	@dbgap@:reads/SRP012000/SRS1054347/SRX1182032/SRR2239665/SRR2239665.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_740808_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBWF-09A-03R.exon.quantification.txt	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBWF-09A-03R.gene.quantification.txt	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBWF-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBWF-09A-03R.fusion.vcf	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBWF-09A-03R.indel.vcf	3			
TARGET-20-PANBWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBWF-09A-03R	RNA	EFO	SRS380439		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBWF-09A-03R A12511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12511	SRX1077686	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBWF-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBWF-09A-03R A12511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12511.fastq	SRR2083200	@dbgap@:reads/SRP012000/SRS380439/SRX1077686/SRR2083200/SRR2083200.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANBWF-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBYS-09A-03R.exon.quantification.txt	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBYS-09A-03R.gene.quantification.txt	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBYS-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBYS-09A-03R.fusion.vcf	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBYS-09A-03R.indel.vcf	3			
TARGET-20-PANBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBYS-09A-03R	RNA	EFO	SRS380335		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBYS-09A-03R A12512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12512	SRX1077675	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBYS-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANBYS-09A-03R A12512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3332-1./A12512.fastq	SRR2083115	@dbgap@:reads/SRP012000/SRS380335/SRX1077675/SRR2083115/SRR2083115.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANBYS-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBZH-09A-03R.exon.quantification.txt	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBZH-09A-03R.gene.quantification.txt	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANBZH-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBZH-09A-03R.fusion.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANBZH-09A-03R.indel.vcf	3			
TARGET-20-PANBZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANBZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANBZH-09A-03R	RNA	EFO	SRS380434		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANBZH-09A-03R A12513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12513	SRX548915	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANBZH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANBZH-09A-03R A12513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12513.fastq	SRR1810596	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1810596/SRR1810596.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294290	@dbgap@:reads/SRP012000/SRS380434/SRX548915/SRR1294290/SRR1294290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANBZH-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANCSC-09A-03R.exon.quantification.txt	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANCSC-09A-03R.gene.quantification.txt	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANCSC-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANCSC-09A-03R.fusion.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANCSC-09A-03R.indel.vcf	3			
TARGET-20-PANCSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANCSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANCSC-09A-03R	RNA	EFO	SRS605847		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANCSC-09A-03R A31910 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31910	SRX542486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANCSC-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANCSC-09A-03R A31910 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2021-1./A31910.fastq	SRR1796889	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1796889/SRR1796889.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31910_1_lane_dupsFlagged.bam	SRR1286884	@dbgap@:reads/SRP012000/SRS605847/SRX542486/SRR1286884/SRR1286884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANCSC-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_741597.gene.quantification.txt	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_741597_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_741597_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_741597_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_741597_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_741597_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_741597_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_741597_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-01R	RNA	EFO	SRS1054346	AML_741597	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANDER-09A-01R 1170-SL-0038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0038	SRX1182033		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANDER-09A-01R 1170-SL-0038 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANDER-09A-01R.fastq	SRR2239666	@dbgap@:reads/SRP012000/SRS1054346/SRX1182033/SRR2239666/SRR2239666.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_741597_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDER-09A-02R.exon.quantification.txt	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDER-09A-02R.gene.quantification.txt	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDER-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANDER-09A-02R.fusion.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANDER-09A-02R.indel.vcf	3			
TARGET-20-PANDER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDER-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDER-09A-02R	RNA	EFO	SRS380386		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDER-09A-02R A12514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12514	SRX548920	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDER-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANDER-09A-02R A12514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12514.fastq	SRR1810584	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1810584/SRR1810584.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294224	@dbgap@:reads/SRP012000/SRS380386/SRX548920/SRR1294224/SRR1294224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANDER-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDIX-09A-03R.exon.quantification.txt	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDIX-09A-03R.gene.quantification.txt	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANDIX-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANDIX-09A-03R.fusion.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANDIX-09A-03R.indel.vcf	3			
TARGET-20-PANDIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANDIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANDIX-09A-03R	RNA	EFO	SRS605600		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANDIX-09A-03R A31957 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31957	SRX542521	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANDIX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANDIX-09A-03R A31957 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31957.fastq	SRR1796931	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1796931/SRR1796931.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31957_1_lane_dupsFlagged.bam	SRR1286870	@dbgap@:reads/SRP012000/SRS605600/SRX542521/SRR1286870/SRR1286870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANDIX-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANFMG-09A-04R.exon.quantification.txt	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANFMG-09A-04R.gene.quantification.txt	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANFMG-09A-04R.isoform.quantification.txt	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANFMG-09A-04R.fusion.vcf	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANFMG-09A-04R.indel.vcf	3			
TARGET-20-PANFMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANFMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANFMG-09A-04R	RNA	EFO	SRS616786		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANFMG-09A-04R A34413 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34413	SRX548878	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANFMG-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANFMG-09A-04R A34413 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34413.fastq	SRR1796875	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1796875/SRR1796875.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664637	@dbgap@:reads/SRP012000/SRS616786/SRX548878/SRR1664637/SRR1664637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANFMG-09A-04R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_743295.gene.quantification.txt	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_743295_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_743295_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_743295_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_743295_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_743295_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_743295_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_743295_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-01R	RNA	EFO	SRS1054345	AML_743295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANGCM-03A-01R 1170-SL-0046 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0046	SRX1182034		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANGCM-03A-01R 1170-SL-0046 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANGCM-03A-01R.fastq	SRR2239667	@dbgap@:reads/SRP012000/SRS1054345/SRX1182034/SRR2239667/SRR2239667.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_743295_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGCM-03A-03R.exon.quantification.txt	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGCM-03A-03R.gene.quantification.txt	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGCM-03A-03R.isoform.quantification.txt	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGCM-03A-03R.fusion.vcf	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGCM-03A-03R.indel.vcf	3			
TARGET-20-PANGCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGCM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGCM-03A-03R	RNA	EFO	SRS380442		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGCM-03A-03R A12516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12516	SRX548908	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGCM-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGCM-03A-03R A12516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12516.fastq	SRR1810615	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1810615/SRR1810615.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294268	@dbgap@:reads/SRP012000/SRS380442/SRX548908/SRR1294268/SRR1294268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANGCM-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGDN-09A-05R.exon.quantification.txt	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGDN-09A-05R.gene.quantification.txt	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGDN-09A-05R.isoform.quantification.txt	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGDN-09A-05R.fusion.vcf	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGDN-09A-05R.indel.vcf	3			
TARGET-20-PANGDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGDN-09A-05R	RNA	EFO	SRS616782		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGDN-09A-05R A34414 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34414	SRX548863	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGDN-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANGDN-09A-05R A34414 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34414.fastq	SRR1796910	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1796910/SRR1796910.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664639	@dbgap@:reads/SRP012000/SRS616782/SRX548863/SRR1664639/SRR1664639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANGDN-09A-05R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGJY-09A-03R.exon.quantification.txt	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGJY-09A-03R.gene.quantification.txt	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGJY-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGJY-09A-03R.fusion.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGJY-09A-03R.indel.vcf	3			
TARGET-20-PANGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGJY-09A-03R	RNA	EFO	SRS380426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGJY-09A-03R A12518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12518	SRX548914	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGJY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANGJY-09A-03R A12518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12518.fastq	SRR1810635	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1810635/SRR1810635.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294291	@dbgap@:reads/SRP012000/SRS380426/SRX548914/SRR1294291/SRR1294291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANGJY-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGTF-09A-04R.exon.quantification.txt	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGTF-09A-04R.gene.quantification.txt	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANGTF-09A-04R.isoform.quantification.txt	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGTF-09A-04R.fusion.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANGTF-09A-04R.indel.vcf	3			
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-04R	RNA	EFO	SRS605611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANGTF-09A-04R A31958 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31958	SRX542520	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANGTF-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANGTF-09A-04R A31958 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31958.fastq	SRR1791161	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1791161/SRR1791161.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31958_1_lane_dupsFlagged.bam	SRR1286853	@dbgap@:reads/SRP012000/SRS605611/SRX542520/SRR1286853/SRR1286853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANGTF-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANHYK-09A-01R.exon.quantification.txt	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANHYK-09A-01R.gene.quantification.txt	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANHYK-09A-01R.isoform.quantification.txt	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANHYK-09A-01R.fusion.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANHYK-09A-01R.indel.vcf	3			
TARGET-20-PANHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANHYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANHYK-09A-01R	RNA	EFO	SRS605862		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANHYK-09A-01R A31948 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31948	SRX542528	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANHYK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANHYK-09A-01R A31948 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31948.fastq	SRR1791122	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1791122/SRR1791122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286895	@dbgap@:reads/SRP012000/SRS605862/SRX542528/SRR1286895/SRR1286895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANHYK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANINI-09A-03R.exon.quantification.txt	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANINI-09A-03R.gene.quantification.txt	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANINI-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANINI-09A-03R.fusion.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANINI-09A-03R.indel.vcf	3			
TARGET-20-PANINI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANINI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANINI-09A-03R	RNA	EFO	SRS380296		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANINI-09A-03R A12519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12519	SRX548925	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANINI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANINI-09A-03R A12519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12519.fastq	SRR1810583	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1810583/SRR1810583.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294274	@dbgap@:reads/SRP012000/SRS380296/SRX548925/SRR1294274/SRR1294274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANINI-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_745148.gene.quantification.txt	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745148_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745148_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745148_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745148_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745148_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745148_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745148_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-01R	RNA	EFO	SRS1054343	AML_745148	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJGR-09A-01R 1170-SL-0039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0039	SRX1182035		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJGR-09A-01R 1170-SL-0039 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJGR-09A-01R.fastq	SRR2239668	@dbgap@:reads/SRP012000/SRS1054343/SRX1182035/SRR2239668/SRR2239668.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745148_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJGR-09A-03R.exon.quantification.txt	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJGR-09A-03R.gene.quantification.txt	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJGR-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANJGR-09A-03R.fusion.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANJGR-09A-03R.indel.vcf	3			
TARGET-20-PANJGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJGR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJGR-09A-03R	RNA	EFO	SRS380396		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJGR-09A-03R A12520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12520	SRX548849	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJGR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANJGR-09A-03R A12520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1879-1./A12520.fastq	SRR1810588	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1810588/SRR1810588.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294236	@dbgap@:reads/SRP012000/SRS380396/SRX548849/SRR1294236/SRR1294236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANJGR-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_745410.gene.quantification.txt	3			
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745410_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745410_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745410_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745410_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745410_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745410_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745410_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANJTK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJTK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJTK-09A-01R	RNA	EFO	SRS1054344	AML_745410	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANJTK-09A-01R 1170-SL-0040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0040	SRX1182036		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANJTK-09A-01R 1170-SL-0040 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANJTK-09A-01R.fastq	SRR2239669	@dbgap@:reads/SRP012000/SRS1054344/SRX1182036/SRR2239669/SRR2239669.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745410_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJVI-03A-02R.exon.quantification.txt	3			
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJVI-03A-02R.gene.quantification.txt	3			
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANJVI-03A-02R.isoform.quantification.txt	3			
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANJVI-03A-02R.fusion.vcf	3			
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANJVI-03A-02R.indel.vcf	3			
TARGET-20-PANJVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANJVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANJVI-03A-02R	RNA	EFO	SRS380414		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANJVI-03A-02R A12521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12521	SRX1077710	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANJVI-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANJVI-03A-02R A12521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3331-1./A12521.fastq	SRR2083185	@dbgap@:reads/SRP012000/SRS380414/SRX1077710/SRR2083185/SRR2083185.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANJVI-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFG-09A-02R.exon.quantification.txt	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFG-09A-02R.gene.quantification.txt	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFG-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKFG-09A-02R.fusion.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKFG-09A-02R.indel.vcf	3			
TARGET-20-PANKFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFG-09A-02R	RNA	EFO	SRS606816		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFG-09A-02R A34415 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34415	SRX542496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANKFG-09A-02R A34415 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34415.fastq	SRR1821181	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1821181/SRR1821181.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664635	@dbgap@:reads/SRP012000/SRS606816/SRX542496/SRR1664635/SRR1664635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANKFG-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFZ-09A-04R.exon.quantification.txt	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFZ-09A-04R.gene.quantification.txt	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKFZ-09A-04R.isoform.quantification.txt	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKFZ-09A-04R.fusion.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKFZ-09A-04R.indel.vcf	3			
TARGET-20-PANKFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKFZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKFZ-09A-04R	RNA	EFO	SRS380369		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKFZ-09A-04R A12522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12522	SRX548910	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKFZ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKFZ-09A-04R A12522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1882-1./A12522.fastq	SRR1810614	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1810614/SRR1810614.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_4_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294267	@dbgap@:reads/SRP012000/SRS380369/SRX548910/SRR1294267/SRR1294267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANKFZ-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKKE-09A-03R.exon.quantification.txt	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKKE-09A-03R.gene.quantification.txt	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKKE-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKKE-09A-03R.fusion.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKKE-09A-03R.indel.vcf	3			
TARGET-20-PANKKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKKE-09A-03R	RNA	EFO	SRS380279		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKKE-09A-03R A12523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12523	SRX548895	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKKE-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANKKE-09A-03R A12523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12523.fastq	SRR1810595	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1810595/SRR1810595.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294279	@dbgap@:reads/SRP012000/SRS380279/SRX548895/SRR1294279/SRR1294279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANKKE-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_745886.gene.quantification.txt	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745886_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_745886_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745886_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_745886_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745886_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_745886_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745886_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-01R	RNA	EFO	SRS1054342	AML_745886	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANKNB-09A-01R 1170-SL-0059 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0059	SRX1182037		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANKNB-09A-01R 1170-SL-0059 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANKNB-09A-01R.fastq	SRR2239670	@dbgap@:reads/SRP012000/SRS1054342/SRX1182037/SRR2239670/SRR2239670.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_745886_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKNB-09A-03R.exon.quantification.txt	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKNB-09A-03R.gene.quantification.txt	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANKNB-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKNB-09A-03R.fusion.vcf	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANKNB-09A-03R.indel.vcf	3			
TARGET-20-PANKNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANKNB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANKNB-09A-03R	RNA	EFO	SRS380272		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANKNB-09A-03R A12524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12524	SRX548857	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANKNB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANKNB-09A-03R A12524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12524.fastq	SRR1810636	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1810636/SRR1810636.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294261	@dbgap@:reads/SRP012000/SRS380272/SRX548857/SRR1294261/SRR1294261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANKNB-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIR-09A-02R.exon.quantification.txt	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIR-09A-02R.gene.quantification.txt	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIR-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIR-09A-02R.fusion.vcf	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIR-09A-02R.indel.vcf	3			
TARGET-20-PANLIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIR-09A-02R	RNA	EFO	SRS605622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIR-09A-02R A31959 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31959	SRX542480	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANLIR-09A-02R A31959 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31959.fastq	SRR1791145	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1791145/SRR1791145.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31959_1_lane_dupsFlagged.bam	SRR1286842	@dbgap@:reads/SRP012000/SRS605622/SRX542480/SRR1286842/SRR1286842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLIR-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-04A-02R.exon.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-04A-02R.gene.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-04A-02R.isoform.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIZ-04A-02R.fusion.vcf	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIZ-04A-02R.indel.vcf	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-02R	RNA	EFO	SRS605580		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-04A-02R A32010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32010	SRX543513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLIZ-04A-02R A32010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32010.fastq	SRR1791130	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1791130/SRR1791130.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288093	@dbgap@:reads/SRP012000/SRS605580/SRX543513/SRR1288093/SRR1288093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLIZ-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_746371.gene.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746371_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746371_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746371_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746371_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746371_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746371_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746371_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01R	RNA	EFO	SRS1054341	AML_746371	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLIZ-09A-01R 1170-SL-0065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0065	SRX1182038		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLIZ-09A-01R 1170-SL-0065 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLIZ-09A-01R.fastq	SRR2239671	@dbgap@:reads/SRP012000/SRS1054341/SRX1182038/SRR2239671/SRR2239671.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746371_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-09A-03R.exon.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-09A-03R.gene.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLIZ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIZ-09A-03R.fusion.vcf	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLIZ-09A-03R.indel.vcf	3			
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-03R	RNA	EFO	SRS605863		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLIZ-09A-03R A31930 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31930	SRX542470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLIZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLIZ-09A-03R A31930 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2015-1./A31930.fastq	SRR1791166	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1791166/SRR1791166.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31930_1_lane_dupsFlagged.bam	SRR1286894	@dbgap@:reads/SRP012000/SRS605863/SRX542470/SRR1286894/SRR1286894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLIZ-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLJN-09A-03R.exon.quantification.txt	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLJN-09A-03R.gene.quantification.txt	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLJN-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLJN-09A-03R.fusion.vcf	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLJN-09A-03R.indel.vcf	3			
TARGET-20-PANLJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLJN-09A-03R	RNA	EFO	SRS380395		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLJN-09A-03R A12525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12525	SRX548871	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLJN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANLJN-09A-03R A12525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12525.fastq	SRR1810574	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1810574/SRR1810574.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294242	@dbgap@:reads/SRP012000/SRS380395/SRX548871/SRR1294242/SRR1294242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLJN-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLKB-09A-03R.exon.quantification.txt	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLKB-09A-03R.gene.quantification.txt	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLKB-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLKB-09A-03R.fusion.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLKB-09A-03R.indel.vcf	3			
TARGET-20-PANLKB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLKB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLKB-09A-03R	RNA	EFO	SRS380315		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLKB-09A-03R A12526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12526	SRX548862	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLKB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANLKB-09A-03R A12526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12526.fastq	SRR1810605	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1810605/SRR1810605.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294257	@dbgap@:reads/SRP012000/SRS380315/SRX548862/SRR1294257/SRR1294257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLKB-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLLX-09A-01R.exon.quantification.txt	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLLX-09A-01R.gene.quantification.txt	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLLX-09A-01R.isoform.quantification.txt	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLLX-09A-01R.fusion.vcf	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLLX-09A-01R.indel.vcf	3			
TARGET-20-PANLLX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLLX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLLX-09A-01R	RNA	EFO	SRS605637		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLLX-09A-01R A31983 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31983	SRX542469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLLX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PANLLX-09A-01R A31983 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1993-1./A31983.fastq	SRR1791143	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1791143/SRR1791143.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_8_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286850	@dbgap@:reads/SRP012000/SRS605637/SRX542469/SRR1286850/SRR1286850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLLX-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_746520.gene.quantification.txt	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746520_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746520_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746520_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746520_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746520_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746520_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746520_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01R	RNA	EFO	SRS1054340	AML_746520	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLRE-09A-01R 1170-SL-0043 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0043	SRX1182039		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLRE-09A-01R 1170-SL-0043 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLRE-09A-01R.fastq	SRR2239672	@dbgap@:reads/SRP012000/SRS1054340/SRX1182039/SRR2239672/SRR2239672.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746520_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLRE-09A-05R.exon.quantification.txt	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLRE-09A-05R.gene.quantification.txt	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLRE-09A-05R.isoform.quantification.txt	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLRE-09A-05R.fusion.vcf	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLRE-09A-05R.indel.vcf	3			
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-05R	RNA	EFO	SRS380342		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLRE-09A-05R A12661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12661	SRX1077673	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLRE-09A-05R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PANLRE-09A-05R A12661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12661.fastq	SRR2083160	@dbgap@:reads/SRP012000/SRS380342/SRX1077673/SRR2083160/SRR2083160.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLRE-09A-05R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXK-09A-03R.exon.quantification.txt	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXK-09A-03R.gene.quantification.txt	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXK-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLXK-09A-03R.fusion.vcf	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLXK-09A-03R.indel.vcf	3			
TARGET-20-PANLXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXK-09A-03R	RNA	EFO	SRS380430		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXK-09A-03R A12527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12527	SRX1077640	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXK-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANLXK-09A-03R A12527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3335-1./A12527.fastq	SRR2083178	@dbgap@:reads/SRP012000/SRS380430/SRX1077640/SRR2083178/SRR2083178.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLXK-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_746675.gene.quantification.txt	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746675_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_746675_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746675_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_746675_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746675_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_746675_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746675_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-01R	RNA	EFO	SRS1054339	AML_746675	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANLXM-09A-01R 1170-SL-0026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0026	SRX1182040		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANLXM-09A-01R 1170-SL-0026 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANLXM-09A-01R.fastq	SRR2239673	@dbgap@:reads/SRP012000/SRS1054339/SRX1182040/SRR2239673/SRR2239673.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_746675_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXM-09A-03R.exon.quantification.txt	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXM-09A-03R.gene.quantification.txt	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANLXM-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLXM-09A-03R.fusion.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANLXM-09A-03R.indel.vcf	3			
TARGET-20-PANLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLXM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLXM-09A-03R	RNA	EFO	SRS605654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANLXM-09A-03R A31972 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31972	SRX542481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANLXM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANLXM-09A-03R A31972 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31972.fastq	SRR1791169	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1791169/SRR1791169.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31972_1_lane_dupsFlagged.bam	SRR1286889	@dbgap@:reads/SRP012000/SRS605654/SRX542481/SRR1286889/SRR1286889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANLXM-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNHB-09A-03R.exon.quantification.txt	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNHB-09A-03R.gene.quantification.txt	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNHB-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANNHB-09A-03R.fusion.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANNHB-09A-03R.indel.vcf	3			
TARGET-20-PANNHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNHB-09A-03R	RNA	EFO	SRS605578		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNHB-09A-03R A31973 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31973	SRX542526	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNHB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANNHB-09A-03R A31973 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2002-1./A31973.fastq	SRR1791173	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1791173/SRR1791173.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31973_1_lane_dupsFlagged.bam	SRR1286857	@dbgap@:reads/SRP012000/SRS605578/SRX542526/SRR1286857/SRR1286857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANNHB-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNJI-09A-03R.exon.quantification.txt	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNJI-09A-03R.gene.quantification.txt	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANNJI-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANNJI-09A-03R.fusion.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANNJI-09A-03R.indel.vcf	3			
TARGET-20-PANNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANNJI-09A-03R	RNA	EFO	SRS380289		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANNJI-09A-03R A12528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12528	SRX548846	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANNJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANNJI-09A-03R A12528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12528.fastq	SRR1810618	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1810618/SRR1810618.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294254	@dbgap@:reads/SRP012000/SRS380289/SRX548846/SRR1294254/SRR1294254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANNJI-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPKN-09A-03R.exon.quantification.txt	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPKN-09A-03R.gene.quantification.txt	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPKN-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPKN-09A-03R.fusion.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPKN-09A-03R.indel.vcf	3			
TARGET-20-PANPKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPKN-09A-03R	RNA	EFO	SRS605861		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPKN-09A-03R A31967 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31967	SRX542485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPKN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANPKN-09A-03R A31967 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31967.fastq	SRR1796883	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1796883/SRR1796883.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31967_1_lane_dupsFlagged.bam	SRR1286916	@dbgap@:reads/SRP012000/SRS605861/SRX542485/SRR1286916/SRR1286916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANPKN-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPLS-03A-04R.exon.quantification.txt	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPLS-03A-04R.gene.quantification.txt	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPLS-03A-04R.isoform.quantification.txt	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPLS-03A-04R.fusion.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPLS-03A-04R.indel.vcf	3			
TARGET-20-PANPLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPLS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPLS-03A-04R	RNA	EFO	SRS605851		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPLS-03A-04R A31971 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31971	SRX542492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPLS-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANPLS-03A-04R A31971 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31971.fastq	SRR1796860	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1796860/SRR1796860.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31971_1_lane_dupsFlagged.bam	SRR1286883	@dbgap@:reads/SRP012000/SRS605851/SRX542492/SRR1286883/SRR1286883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANPLS-03A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPTM-09A-02R.exon.quantification.txt	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPTM-09A-02R.gene.quantification.txt	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANPTM-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPTM-09A-02R.fusion.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANPTM-09A-02R.indel.vcf	3			
TARGET-20-PANPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANPTM-09A-02R	RNA	EFO	SRS380382		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANPTM-09A-02R A12529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12529	SRX548926	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANPTM-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PANPTM-09A-02R A12529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12529.fastq	SRR1810585	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1810585/SRR1810585.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294284	@dbgap@:reads/SRP012000/SRS380382/SRX548926/SRR1294284/SRR1294284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANPTM-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_748689.gene.quantification.txt	3			
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_748689_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_748689_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_748689_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_748689_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_748689_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_748689_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_748689_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANRIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANRIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANRIK-09A-01R	RNA	EFO	SRS1054338	AML_748689	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANRIK-09A-01R 1170-SL-0025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0025	SRX1182041		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANRIK-09A-01R 1170-SL-0025 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANRIK-09A-01R.fastq	SRR2239674	@dbgap@:reads/SRP012000/SRS1054338/SRX1182041/SRR2239674/SRR2239674.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_748689_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSBH-09A-05R.exon.quantification.txt	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSBH-09A-05R.gene.quantification.txt	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSBH-09A-05R.isoform.quantification.txt	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANSBH-09A-05R.fusion.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANSBH-09A-05R.indel.vcf	3			
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-05R	RNA	EFO	SRS606814		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSBH-09A-05R A34416 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A34416	SRX542465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSBH-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PANSBH-09A-05R A34416 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34416.fastq	SRR1796880	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1796880/SRR1796880.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664644	@dbgap@:reads/SRP012000/SRS606814/SRX542465/SRR1664644/SRR1664644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANSBH-09A-05R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_749283.gene.quantification.txt	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_749283_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_749283_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_749283_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_749283_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_749283_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_749283_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_749283_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-01R	RNA	EFO	SRS1054337	AML_749283	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANSJB-09A-01R 1170-SL-0029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0029	SRX1182042		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANSJB-09A-01R 1170-SL-0029 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANSJB-09A-01R.fastq	SRR2239675	@dbgap@:reads/SRP012000/SRS1054337/SRX1182042/SRR2239675/SRR2239675.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_749283_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSJB-09A-03R.exon.quantification.txt	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSJB-09A-03R.gene.quantification.txt	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANSJB-09A-03R.isoform.quantification.txt	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANSJB-09A-03R.fusion.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANSJB-09A-03R.indel.vcf	3			
TARGET-20-PANSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSJB-09A-03R	RNA	EFO	SRS380424		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANSJB-09A-03R A12530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12530	SRX548891	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANSJB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANSJB-09A-03R A12530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12530.fastq	SRR1810598	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1810598/SRR1810598.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294243	@dbgap@:reads/SRP012000/SRS380424/SRX548891/SRR1294243/SRR1294243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANSJB-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTNA-09A-02R.exon.quantification.txt	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTNA-09A-02R.gene.quantification.txt	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTNA-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANTNA-09A-02R.fusion.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANTNA-09A-02R.indel.vcf	3			
TARGET-20-PANTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTNA-09A-02R	RNA	EFO	SRS380333		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTNA-09A-02R A12531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12531	SRX548894	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTNA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANTNA-09A-02R A12531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12531.fastq	SRR1810587	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1810587/SRR1810587.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294262	@dbgap@:reads/SRP012000/SRS380333/SRX548894/SRR1294262/SRR1294262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANTNA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_750004.gene.quantification.txt	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_750004_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_750004_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750004_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750004_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750004_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750004_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750004_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-01R	RNA	EFO	SRS1054336	AML_750004	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANTPW-09A-01R 1170-SL-0060 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0060	SRX1182043		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANTPW-09A-01R 1170-SL-0060 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANTPW-09A-01R.fastq	SRR2239676	@dbgap@:reads/SRP012000/SRS1054336/SRX1182043/SRR2239676/SRR2239676.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750004_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTPW-09A-02R.exon.quantification.txt	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTPW-09A-02R.gene.quantification.txt	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANTPW-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANTPW-09A-02R.fusion.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANTPW-09A-02R.indel.vcf	3			
TARGET-20-PANTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTPW-09A-02R	RNA	EFO	SRS380423		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANTPW-09A-02R A12532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12532	SRX548918	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANTPW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANTPW-09A-02R A12532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1889-1./A12532.fastq	SRR1810577	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1810577/SRR1810577.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294225	@dbgap@:reads/SRP012000/SRS380423/SRX548918/SRR1294225/SRR1294225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANTPW-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_750639.gene.quantification.txt	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_750639_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_750639_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750639_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750639_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750639_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750639_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750639_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-01R	RNA	EFO	SRS1054335	AML_750639	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANUTB-09A-01R 1170-SL-0052 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0052	SRX1182044		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANUTB-09A-01R 1170-SL-0052 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANUTB-09A-01R.fastq	SRR2239677	@dbgap@:reads/SRP012000/SRS1054335/SRX1182044/SRR2239677/SRR2239677.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750639_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUTB-09A-05R.exon.quantification.txt	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUTB-09A-05R.gene.quantification.txt	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUTB-09A-05R.isoform.quantification.txt	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANUTB-09A-05R.fusion.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANUTB-09A-05R.indel.vcf	3			
TARGET-20-PANUTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUTB-09A-05R	RNA	EFO	SRS605599		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUTB-09A-05R A31962 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31962	SRX542504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUTB-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PANUTB-09A-05R A31962 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31962.fastq	SRR1791148	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1791148/SRR1791148.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31962_1_lane_dupsFlagged.bam	SRR1286852	@dbgap@:reads/SRP012000/SRS605599/SRX542504/SRR1286852/SRR1286852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANUTB-09A-05R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUUA-09A-02R.exon.quantification.txt	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUUA-09A-02R.gene.quantification.txt	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANUUA-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANUUA-09A-02R.fusion.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANUUA-09A-02R.indel.vcf	3			
TARGET-20-PANUUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANUUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANUUA-09A-02R	RNA	EFO	SRS380334		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANUUA-09A-02R A12533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12533	SRX548845	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANUUA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANUUA-09A-02R A12533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12533.fastq	SRR1810638	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1810638/SRR1810638.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294272	@dbgap@:reads/SRP012000/SRS380334/SRX548845/SRR1294272/SRR1294272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANUUA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVBP-09A-02R.exon.quantification.txt	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVBP-09A-02R.gene.quantification.txt	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVBP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVBP-09A-02R.fusion.vcf	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVBP-09A-02R.indel.vcf	3			
TARGET-20-PANVBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVBP-09A-02R	RNA	EFO	SRS380435		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVBP-09A-02R A12534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12534	SRX1077670	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVBP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PANVBP-09A-02R A12534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12534.fastq	SRR2083172	@dbgap@:reads/SRP012000/SRS380435/SRX1077670/SRR2083172/SRR2083172.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANVBP-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGE-09A-02R.exon.quantification.txt	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGE-09A-02R.gene.quantification.txt	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGE-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVGE-09A-02R.fusion.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVGE-09A-02R.indel.vcf	3			
TARGET-20-PANVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGE-09A-02R	RNA	EFO	SRS380340		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGE-09A-02R A12535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12535	SRX548852	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGE-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PANVGE-09A-02R A12535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1898-1./A12535.fastq	SRR1810575	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1810575/SRR1810575.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294234	@dbgap@:reads/SRP012000/SRS380340/SRX548852/SRR1294234/SRR1294234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANVGE-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGP-03A-04R.exon.quantification.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGP-03A-04R.gene.quantification.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANVGP-03A-04R.isoform.quantification.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVGP-03A-04R.fusion.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANVGP-03A-04R.indel.vcf	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-03A-04R	RNA	EFO	SRS606817		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANVGP-03A-04R A34417 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34417	SRX542507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANVGP-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PANVGP-03A-04R A34417 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34417.fastq	SRR1796859	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1796859/SRR1796859.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664643	@dbgap@:reads/SRP012000/SRS606817/SRX542507/SRR1664643/SRR1664643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANVGP-03A-04R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_750966.gene.quantification.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3			
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750966_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_750966_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750966_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_750966_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750966_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01R	RNA	EFO	SRS1054334	AML_750966	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANVGP-09A-01R 1170-SL-0042 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0042	SRX1182045		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANVGP-09A-01R 1170-SL-0042 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANVGP-09A-01R.fastq	SRR2239678	@dbgap@:reads/SRP012000/SRS1054334/SRX1182045/SRR2239678/SRR2239678.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_750966_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_751571.gene.quantification.txt	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_751571_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_751571_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_751571_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_751571_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_751571_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_751571_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_751571_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-01R	RNA	EFO	SRS1054333	AML_751571	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PANWHP-09A-01R 1170-SL-0044 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0044	SRX1182046		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PANWHP-09A-01R 1170-SL-0044 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PANWHP-09A-01R.fastq	SRR2239679	@dbgap@:reads/SRP012000/SRS1054333/SRX1182046/SRR2239679/SRR2239679.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_751571_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANWHP-09A-02R.exon.quantification.txt	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANWHP-09A-02R.gene.quantification.txt	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANWHP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANWHP-09A-02R.fusion.vcf	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANWHP-09A-02R.indel.vcf	3			
TARGET-20-PANWHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANWHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANWHP-09A-02R	RNA	EFO	SRS380357		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANWHP-09A-02R A12536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12536	SRX548900	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANWHP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANWHP-09A-02R A12536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1893-1./A12536.fastq	SRR1810597	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1810597/SRR1810597.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_7_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294265	@dbgap@:reads/SRP012000/SRS380357/SRX548900/SRR1294265/SRR1294265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANWHP-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYGP-09A-01R.exon.quantification.txt	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYGP-09A-01R.gene.quantification.txt	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYGP-09A-01R.isoform.quantification.txt	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYGP-09A-01R.fusion.vcf	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYGP-09A-01R.indel.vcf	3			
TARGET-20-PANYGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYGP-09A-01R	RNA	EFO	SRS380365		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYGP-09A-01R A12537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12537	SRX548869	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PANYGP-09A-01R A12537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12537.fastq	SRR1810620	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1810620/SRR1810620.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294266	@dbgap@:reads/SRP012000/SRS380365/SRX548869/SRR1294266/SRR1294266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANYGP-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYNR-03A-03R.exon.quantification.txt	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYNR-03A-03R.gene.quantification.txt	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYNR-03A-03R.isoform.quantification.txt	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYNR-03A-03R.fusion.vcf	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYNR-03A-03R.indel.vcf	3			
TARGET-20-PANYNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYNR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYNR-03A-03R	RNA	EFO	SRS605573		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYNR-03A-03R A31963 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31963	SRX542462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYNR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PANYNR-03A-03R A31963 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2026-1./A31963.fastq	SRR1796897	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1796897/SRR1796897.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31963_1_lane_dupsFlagged.bam	SRR1286854	@dbgap@:reads/SRP012000/SRS605573/SRX542462/SRR1286854/SRR1286854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANYNR-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYSN-03A-04R.exon.quantification.txt	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYSN-03A-04R.gene.quantification.txt	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANYSN-03A-04R.isoform.quantification.txt	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYSN-03A-04R.fusion.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANYSN-03A-04R.indel.vcf	3			
TARGET-20-PANYSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANYSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANYSN-03A-04R	RNA	EFO	SRS605572		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANYSN-03A-04R A31984 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31984	SRX542497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANYSN-03A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PANYSN-03A-04R A31984 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2013-1./A31984.fastq	SRR1796932	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1796932/SRR1796932.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31984_1_lane_dupsFlagged.bam	SRR1286907	@dbgap@:reads/SRP012000/SRS605572/SRX542497/SRR1286907/SRR1286907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANYSN-03A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZKA-09A-02R.exon.quantification.txt	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZKA-09A-02R.gene.quantification.txt	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZKA-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANZKA-09A-02R.fusion.vcf	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANZKA-09A-02R.indel.vcf	3			
TARGET-20-PANZKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZKA-09A-02R	RNA	EFO	SRS380302		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZKA-09A-02R A12538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12538	SRX548880	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZKA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZKA-09A-02R A12538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1892-1./A12538.fastq	SRR1810616	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1810616/SRR1810616.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294227	@dbgap@:reads/SRP012000/SRS380302/SRX548880/SRR1294227/SRR1294227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANZKA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZWB-09A-02R.exon.quantification.txt	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZWB-09A-02R.gene.quantification.txt	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PANZWB-09A-02R.isoform.quantification.txt	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANZWB-09A-02R.fusion.vcf	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PANZWB-09A-02R.indel.vcf	3			
TARGET-20-PANZWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANZWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANZWB-09A-02R	RNA	EFO	SRS380372		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PANZWB-09A-02R A12539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12539	SRX548886	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PANZWB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PANZWB-09A-02R A12539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1891-1./A12539.fastq	SRR1810610	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1810610/SRR1810610.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_5_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294244	@dbgap@:reads/SRP012000/SRS380372/SRX548886/SRR1294244/SRR1294244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PANZWB-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_753819.gene.quantification.txt	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_753819_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_753819_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_753819_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_753819_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_753819_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_753819_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_753819_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-01R	RNA	EFO	SRS1054332	AML_753819	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPAEG-09A-01R 1170-SL-0020 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0020	SRX1182047		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPAEG-09A-01R 1170-SL-0020 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPAEG-09A-01R.fastq	SRR2239680	@dbgap@:reads/SRP012000/SRS1054332/SRX1182047/SRR2239680/SRR2239680.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_753819_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAEG-09A-02R.exon.quantification.txt	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAEG-09A-02R.gene.quantification.txt	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAEG-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPAEG-09A-02R.fusion.vcf	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPAEG-09A-02R.indel.vcf	3			
TARGET-20-PAPAEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAEG-09A-02R	RNA	EFO	SRS380331		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAEG-09A-02R A12540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12540	SRX1077632	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAEG-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPAEG-09A-02R A12540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3322-1./A12540.fastq	SRR2083181	@dbgap@:reads/SRP012000/SRS380331/SRX1077632/SRR2083181/SRR2083181.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPAEG-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAWN-09A-02R.exon.quantification.txt	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAWN-09A-02R.gene.quantification.txt	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPAWN-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPAWN-09A-02R.fusion.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPAWN-09A-02R.indel.vcf	3			
TARGET-20-PAPAWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPAWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPAWN-09A-02R	RNA	EFO	SRS380354		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPAWN-09A-02R A12604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12604	SRX548859	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPAWN-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PAPAWN-09A-02R A12604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1895-1./A12604.fastq	SRR1810623	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1810623/SRR1810623.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_6_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294288	@dbgap@:reads/SRP012000/SRS380354/SRX548859/SRR1294288/SRR1294288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPAWN-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPBEJ-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPBEJ-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPBEJ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPBEJ-09A-03R.fusion.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPBEJ-09A-03R.indel.vcf	3			
TARGET-20-PAPBEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPBEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPBEJ-09A-03R	RNA	EFO	SRS605566		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPBEJ-09A-03R A31964 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31964	SRX542515	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPBEJ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPBEJ-09A-03R A31964 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31964.fastq	SRR1796896	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1796896/SRR1796896.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31964_1_lane_dupsFlagged.bam	SRR1286897	@dbgap@:reads/SRP012000/SRS605566/SRX542515/SRR1286897/SRR1286897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPBEJ-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPUNR-09A-02R.exon.quantification.txt	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPUNR-09A-02R.gene.quantification.txt	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPUNR-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPUNR-09A-02R.fusion.vcf	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPUNR-09A-02R.indel.vcf	3			
TARGET-20-PAPUNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPUNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPUNR-09A-02R	RNA	EFO	SRS380384		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPUNR-09A-02R A12656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12656	SRX1077701	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPUNR-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPUNR-09A-02R A12656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12656.fastq	SRR2083112	@dbgap@:reads/SRP012000/SRS380384/SRX1077701/SRR2083112/SRR2083112.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPUNR-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_764821.gene.quantification.txt	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_764821_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_764821_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_764821_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_764821_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_764821_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_764821_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_764821_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-01R	RNA	EFO	SRS1054331	AML_764821	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVCN-09A-01R 1170-SL-0053 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0053	SRX1182048		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVCN-09A-01R 1170-SL-0053 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVCN-09A-01R.fastq	SRR2239681	@dbgap@:reads/SRP012000/SRS1054331/SRX1182048/SRR2239681/SRR2239681.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_764821_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVCN-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVCN-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVCN-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVCN-09A-03R.fusion.vcf	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVCN-09A-03R.indel.vcf	3			
TARGET-20-PAPVCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVCN-09A-03R	RNA	EFO	SRS380411		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVCN-09A-03R A12541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12541	SRX548912	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVCN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPVCN-09A-03R A12541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12541.fastq	SRR1810606	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1810606/SRR1810606.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294217	@dbgap@:reads/SRP012000/SRS380411/SRX548912/SRR1294217/SRR1294217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPVCN-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVDV-03A-01R.exon.quantification.txt	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVDV-03A-01R.gene.quantification.txt	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVDV-03A-01R.isoform.quantification.txt	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVDV-03A-01R.fusion.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVDV-03A-01R.indel.vcf	3			
TARGET-20-PAPVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVDV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVDV-03A-01R	RNA	EFO	SRS616784		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVDV-03A-01R A34418 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34418	SRX548873	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVDV-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PAPVDV-03A-01R A34418 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2415-1./A34418.fastq	SRR1796891	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1796891/SRR1796891.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_6_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1664645	@dbgap@:reads/SRP012000/SRS616784/SRX548873/SRR1664645/SRR1664645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPVDV-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVGE-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVGE-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVGE-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVGE-09A-03R.fusion.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVGE-09A-03R.indel.vcf	3			
TARGET-20-PAPVGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVGE-09A-03R	RNA	EFO	SRS380346		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVGE-09A-03R A12608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12608	SRX1077666	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVGE-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAPVGE-09A-03R A12608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12608.fastq	SRR2083138	@dbgap@:reads/SRP012000/SRS380346/SRX1077666/SRR2083138/SRR2083138.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPVGE-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_765326.gene.quantification.txt	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_765326_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_765326_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_765326_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_765326_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_765326_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_765326_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_765326_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-01R	RNA	EFO	SRS1054302	AML_765326	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPVZK-09A-01R 1170-SL-0054 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0054	SRX1182049		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPVZK-09A-01R 1170-SL-0054 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPVZK-09A-01R.fastq	SRR2239682	@dbgap@:reads/SRP012000/SRS1054302/SRX1182049/SRR2239682/SRR2239682.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_765326_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVZK-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVZK-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPVZK-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVZK-09A-03R.fusion.vcf	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPVZK-09A-03R.indel.vcf	3			
TARGET-20-PAPVZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPVZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPVZK-09A-03R	RNA	EFO	SRS380368		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPVZK-09A-03R A12543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12543	SRX548893	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPVZK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPVZK-09A-03R A12543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12543.fastq	SRR1810641	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1810641/SRR1810641.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294285	@dbgap@:reads/SRP012000/SRS380368/SRX548893/SRR1294285/SRR1294285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPVZK-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWHS-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWHS-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWHS-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWHS-09A-03R.fusion.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWHS-09A-03R.indel.vcf	3			
TARGET-20-PAPWHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWHS-09A-03R	RNA	EFO	SRS380268		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWHS-09A-03R A12544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12544	SRX548872	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWHS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWHS-09A-03R A12544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1884-1./A12544.fastq	SRR1810621	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1810621/SRR1810621.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294273	@dbgap@:reads/SRP012000/SRS380268/SRX548872/SRR1294273/SRR1294273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPWHS-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_765551.gene.quantification.txt	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_765551_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_765551_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_765551_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_765551_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_765551_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_765551_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_765551_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-01R	RNA	EFO	SRS1054330	AML_765551	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPWIU-09A-01R 1170-SL-0005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0005	SRX1182050		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPWIU-09A-01R 1170-SL-0005 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPWIU-09A-01R.fastq	SRR2239683	@dbgap@:reads/SRP012000/SRS1054330/SRX1182050/SRR2239683/SRR2239683.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_765551_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWIU-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWIU-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWIU-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWIU-09A-03R.fusion.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWIU-09A-03R.indel.vcf	3			
TARGET-20-PAPWIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWIU-09A-03R	RNA	EFO	SRS380373		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWIU-09A-03R A12545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12545	SRX548879	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPWIU-09A-03R A12545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1888-1./A12545.fastq	SRR1810637	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1810637/SRR1810637.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294294	@dbgap@:reads/SRP012000/SRS380373/SRX548879/SRR1294294/SRR1294294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPWIU-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWYK-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWYK-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWYK-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWYK-09A-03R.fusion.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWYK-09A-03R.indel.vcf	3			
TARGET-20-PAPWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWYK-09A-03R	RNA	EFO	SRS380309		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWYK-09A-03R A12546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12546	SRX548897	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWYK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PAPWYK-09A-03R A12546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12546.fastq	SRR1810643	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1810643/SRR1810643.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294235	@dbgap@:reads/SRP012000/SRS380309/SRX548897/SRR1294235/SRR1294235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPWYK-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWZR-09A-01R.exon.quantification.txt	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWZR-09A-01R.gene.quantification.txt	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPWZR-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWZR-09A-01R.fusion.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPWZR-09A-01R.indel.vcf	3			
TARGET-20-PAPWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPWZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPWZR-09A-01R	RNA	EFO	SRS380377		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPWZR-09A-01R A12645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12645	SRX1077706	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPWZR-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PAPWZR-09A-01R A12645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12645.fastq	SRR2083111	@dbgap@:reads/SRP012000/SRS380377/SRX1077706/SRR2083111/SRR2083111.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPWZR-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-04A-02R.exon.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-04A-02R.gene.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-04A-02R.isoform.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXRJ-04A-02R.fusion.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXRJ-04A-02R.indel.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-04A-02R	RNA	EFO	SRS605558		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-04A-02R A31997 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31997	SRX542517	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-04A-02R A31997 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31997.fastq	SRR1796882	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1796882/SRR1796882.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31997_1_lane_dupsFlagged.bam	SRR1286917	@dbgap@:reads/SRP012000/SRS605558/SRX542517/SRR1286917/SRR1286917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPXRJ-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-09A-01R.exon.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-09A-01R.gene.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXRJ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXRJ-09A-01R.fusion.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXRJ-09A-01R.indel.vcf	3			
TARGET-20-PAPXRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXRJ-09A-01R	RNA	EFO	SRS605644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXRJ-09A-01R A31912 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31912	SRX542491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXRJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PAPXRJ-09A-01R A31912 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A31912.fastq	SRR1791159	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1791159/SRR1791159.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31912_1_lane_dupsFlagged.bam	SRR1286905	@dbgap@:reads/SRP012000/SRS605644/SRX542491/SRR1286905/SRR1286905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPXRJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXUF-09A-01R.exon.quantification.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXUF-09A-01R.gene.quantification.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXUF-09A-01R.isoform.quantification.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXUF-09A-01R.fusion.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXUF-09A-01R.indel.vcf	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXUF-09A-01R A12547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12547	SRX1077663	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXUF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPXUF-09A-01R A12547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12547.fastq	SRR2083155	@dbgap@:reads/SRP012000/SRS380392/SRX1077663/SRR2083155/SRR2083155.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPXUF-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_766360.gene.quantification.txt	3			
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_766360_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_766360_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_766360_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_766360_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_766360_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_766360_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_766360_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PAPXUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXUF-09A-01R	RNA	EFO	SRS380392	AML_766360	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PAPXUF-09A-01R 1170-SL-0021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0021	SRX1182051		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PAPXUF-09A-01R 1170-SL-0021 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PAPXUF-09A-01R.fastq	SRR2239684	@dbgap@:reads/SRP012000/SRS380392/SRX1182051/SRR2239684/SRR2239684.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_766360_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXWI-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXWI-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPXWI-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXWI-09A-03R.fusion.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPXWI-09A-03R.indel.vcf	3			
TARGET-20-PAPXWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPXWI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPXWI-09A-03R	RNA	EFO	SRS380394		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPXWI-09A-03R A12548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12548	SRX548877	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPXWI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PAPXWI-09A-03R A12548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12548.fastq	SRR1810593	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1810593/SRR1810593.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294247	@dbgap@:reads/SRP012000/SRS380394/SRX548877/SRR1294247/SRR1294247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPXWI-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZIZ-09A-03R.exon.quantification.txt	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZIZ-09A-03R.gene.quantification.txt	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZIZ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPZIZ-09A-03R.fusion.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPZIZ-09A-03R.indel.vcf	3			
TARGET-20-PAPZIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZIZ-09A-03R	RNA	EFO	SRS380306		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZIZ-09A-03R A12549 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12549	SRX1077647	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZIZ-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZIZ-09A-03R A12549 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3323-1./A12549.fastq	SRR2083145	@dbgap@:reads/SRP012000/SRS380306/SRX1077647/SRR2083145/SRR2083145.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPZIZ-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZLT-09A-02R.exon.quantification.txt	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZLT-09A-02R.gene.quantification.txt	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAPZLT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPZLT-09A-02R.fusion.vcf	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAPZLT-09A-02R.indel.vcf	3			
TARGET-20-PAPZLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAPZLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAPZLT-09A-02R	RNA	EFO	SRS380437		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAPZLT-09A-02R A12550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12550	SRX1077654	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAPZLT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PAPZLT-09A-02R A12550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3327-1./A12550.fastq	SRR2083151	@dbgap@:reads/SRP012000/SRS380437/SRX1077654/SRR2083151/SRR2083151.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAPZLT-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_767829.gene.quantification.txt	3			
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_767829_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_767829_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_767829_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_767829_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_767829_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_767829_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_767829_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARAHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAHF-09A-01R	RNA	EFO	SRS1054329	AML_767829	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARAHF-09A-01R 1170-SL-0055 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0055	SRX1182052		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARAHF-09A-01R 1170-SL-0055 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARAHF-09A-01R.fastq	SRR2239685	@dbgap@:reads/SRP012000/SRS1054329/SRX1182052/SRR2239685/SRR2239685.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_767829_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARAJX-09A-02R.exon.quantification.txt	3			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARAJX-09A-02R.gene.quantification.txt	3			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARAJX-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARAJX-09A-02R.fusion.vcf	3			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARAJX-09A-02R.indel.vcf	3			
TARGET-20-PARAJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARAJX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARAJX-09A-02R	RNA	EFO	SRS380311		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARAJX-09A-02R A12551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12551	SRX548866	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARAJX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARAJX-09A-02R A12551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12551.fastq	SRR1810589	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1810589/SRR1810589.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294249	@dbgap@:reads/SRP012000/SRS380311/SRX548866/SRR1294249/SRR1294249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARAJX-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARANT-09A-02R.exon.quantification.txt	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARANT-09A-02R.gene.quantification.txt	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARANT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARANT-09A-02R.fusion.vcf	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARANT-09A-02R.indel.vcf	3			
TARGET-20-PARANT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARANT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARANT-09A-02R	RNA	EFO	SRS380376		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARANT-09A-02R A12552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12552	SRX548848	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARANT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARANT-09A-02R A12552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1885-1./A12552.fastq	SRR1810594	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1810594/SRR1810594.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294223	@dbgap@:reads/SRP012000/SRS380376/SRX548848/SRR1294223/SRR1294223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARANT-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARASV-03A-03R.exon.quantification.txt	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARASV-03A-03R.gene.quantification.txt	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARASV-03A-03R.isoform.quantification.txt	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARASV-03A-03R.fusion.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARASV-03A-03R.indel.vcf	3			
TARGET-20-PARASV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARASV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARASV-03A-03R	RNA	EFO	SRS380308		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARASV-03A-03R A12553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12553	SRX548884	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARASV-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARASV-03A-03R A12553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1869-1./A12553.fastq	SRR1810624	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1810624/SRR1810624.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_7_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294255	@dbgap@:reads/SRP012000/SRS380308/SRX548884/SRR1294255/SRR1294255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARASV-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_768364.gene.quantification.txt	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_768364_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_768364_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_768364_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_768364_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_768364_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_768364_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_768364_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-01R	RNA	EFO	SRS1054327	AML_768364	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBFJ-09A-01R 1170-SL-0015 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0015	SRX1182053		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBFJ-09A-01R 1170-SL-0015 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBFJ-09A-01R.fastq	SRR2239686	@dbgap@:reads/SRP012000/SRS1054327/SRX1182053/SRR2239686/SRR2239686.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_768364_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFJ-09A-02R.exon.quantification.txt	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFJ-09A-02R.gene.quantification.txt	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFJ-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBFJ-09A-02R.fusion.vcf	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBFJ-09A-02R.indel.vcf	3			
TARGET-20-PARBFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFJ-09A-02R	RNA	EFO	SRS380285		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFJ-09A-02R A12554 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12554	SRX548861	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBFJ-09A-02R A12554 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1864-1./A12554.fastq	SRR1810611	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1810611/SRR1810611.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294215	@dbgap@:reads/SRP012000/SRS380285/SRX548861/SRR1294215/SRR1294215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBFJ-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFZ-03A-02R.exon.quantification.txt	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFZ-03A-02R.gene.quantification.txt	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBFZ-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBFZ-03A-02R.fusion.vcf	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBFZ-03A-02R.indel.vcf	3			
TARGET-20-PARBFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBFZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBFZ-03A-02R	RNA	EFO	SRS380400		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBFZ-03A-02R A12555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12555	SRX1077676	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBFZ-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBFZ-03A-02R A12555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3318-1./A12555.fastq	SRR2083153	@dbgap@:reads/SRP012000/SRS380400/SRX1077676/SRR2083153/SRR2083153.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBFZ-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-04A-02R.exon.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-04A-02R.gene.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-04A-02R.isoform.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBIU-04A-02R.fusion.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBIU-04A-02R.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-04A-02R	RNA	EFO	SRS605631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-04A-02R A32021 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32021	SRX543484	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARBIU-04A-02R A32021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32021.fastq	SRR1791133	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1791133/SRR1791133.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288111	@dbgap@:reads/SRP012000/SRS605631/SRX543484/SRR1288111/SRR1288111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBIU-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-09A-03R.exon.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-09A-03R.gene.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBIU-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBIU-09A-03R.fusion.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBIU-09A-03R.indel.vcf	3			
TARGET-20-PARBIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBIU-09A-03R	RNA	EFO	SRS616785		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBIU-09A-03R A34419 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34419	SRX548874	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBIU-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBIU-09A-03R A34419 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2413-1./A34419.fastq	SRR1796901	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1796901/SRR1796901.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_4_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664634	@dbgap@:reads/SRP012000/SRS616785/SRX548874/SRR1664634/SRR1664634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBIU-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBRA-09A-03R.exon.quantification.txt	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBRA-09A-03R.gene.quantification.txt	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBRA-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBRA-09A-03R.fusion.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBRA-09A-03R.indel.vcf	3			
TARGET-20-PARBRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBRA-09A-03R	RNA	EFO	SRS380404		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBRA-09A-03R A12557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12557	SRX548854	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBRA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARBRA-09A-03R A12557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12557.fastq	SRR1810604	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1810604/SRR1810604.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294264	@dbgap@:reads/SRP012000/SRS380404/SRX548854/SRR1294264/SRR1294264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBRA-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_768662.gene.quantification.txt	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_768662_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_768662_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_768662_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_768662_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_768662_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_768662_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_768662_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-01R	RNA	EFO	SRS1054328	AML_768662	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARBTV-09A-01R 1170-SL-0001 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0001	SRX1182054		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARBTV-09A-01R 1170-SL-0001 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARBTV-09A-01R.fastq	SRR2239687	@dbgap@:reads/SRP012000/SRS1054328/SRX1182054/SRR2239687/SRR2239687.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_768662_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBTV-09A-02R.exon.quantification.txt	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBTV-09A-02R.gene.quantification.txt	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBTV-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBTV-09A-02R.fusion.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBTV-09A-02R.indel.vcf	3			
TARGET-20-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBTV-09A-02R	RNA	EFO	SRS380371		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBTV-09A-02R A12558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12558	SRX1077674	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBTV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBTV-09A-02R A12558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12558.fastq	SRR2083120	@dbgap@:reads/SRP012000/SRS380371/SRX1077674/SRR2083120/SRR2083120.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBTV-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBVE-09A-02R.exon.quantification.txt	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBVE-09A-02R.gene.quantification.txt	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBVE-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBVE-09A-02R.fusion.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBVE-09A-02R.indel.vcf	3			
TARGET-20-PARBVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBVE-09A-02R	RNA	EFO	SRS380305		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBVE-09A-02R A12559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12559	SRX1077667	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBVE-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARBVE-09A-02R A12559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12559.fastq	SRR2083110	@dbgap@:reads/SRP012000/SRS380305/SRX1077667/SRR2083110/SRR2083110.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBVE-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBXE-09A-04R.exon.quantification.txt	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBXE-09A-04R.gene.quantification.txt	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARBXE-09A-04R.isoform.quantification.txt	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBXE-09A-04R.fusion.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARBXE-09A-04R.indel.vcf	3			
TARGET-20-PARBXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARBXE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARBXE-09A-04R	RNA	EFO	SRS616789		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARBXE-09A-04R A34420 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34420	SRX548927	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARBXE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARBXE-09A-04R A34420 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2416-1./A34420.fastq	SRR1796886	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1796886/SRR1796886.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664638	@dbgap@:reads/SRP012000/SRS616789/SRX548927/SRR1664638/SRR1664638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARBXE-09A-04R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCCH-03A-03R.exon.quantification.txt	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCCH-03A-03R.gene.quantification.txt	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCCH-03A-03R.isoform.quantification.txt	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCCH-03A-03R.fusion.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCCH-03A-03R.indel.vcf	3			
TARGET-20-PARCCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCCH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCCH-03A-03R	RNA	EFO	SRS605646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCCH-03A-03R A31987 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31987	SRX542459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCCH-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARCCH-03A-03R A31987 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31987.fastq	SRR1796919	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1796919/SRR1796919.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31987_1_lane_dupsFlagged.bam	SRR1286892	@dbgap@:reads/SRP012000/SRS605646/SRX542459/SRR1286892/SRR1286892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCCH-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCEV-09A-02R.exon.quantification.txt	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCEV-09A-02R.gene.quantification.txt	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCEV-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCEV-09A-02R.fusion.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCEV-09A-02R.indel.vcf	3			
TARGET-20-PARCEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCEV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCEV-09A-02R	RNA	EFO	SRS380293		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCEV-09A-02R A12560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12560	SRX1077621	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCEV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARCEV-09A-02R A12560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3326-1./A12560.fastq	SRR2083173	@dbgap@:reads/SRP012000/SRS380293/SRX1077621/SRR2083173/SRR2083173.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCEV-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCHW-09A-01R.exon.quantification.txt	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCHW-09A-01R.gene.quantification.txt	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCHW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCHW-09A-01R.fusion.vcf	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCHW-09A-01R.indel.vcf	3			
TARGET-20-PARCHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCHW-09A-01R	RNA	EFO	SRS380282		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCHW-09A-01R A12651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12651	SRX1077650	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCHW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARCHW-09A-01R A12651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12651.fastq	SRR2083180	@dbgap@:reads/SRP012000/SRS380282/SRX1077650/SRR2083180/SRR2083180.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCHW-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCUK-09A-03R.exon.quantification.txt	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCUK-09A-03R.gene.quantification.txt	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCUK-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCUK-09A-03R.fusion.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCUK-09A-03R.indel.vcf	3			
TARGET-20-PARCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCUK-09A-03R	RNA	EFO	SRS380378		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCUK-09A-03R A12561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12561	SRX548882	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCUK-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARCUK-09A-03R A12561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12561.fastq	SRR1810600	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1810600/SRR1810600.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294250	@dbgap@:reads/SRP012000/SRS380378/SRX548882/SRR1294250/SRR1294250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCUK-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCVS-04A-01R.exon.quantification.txt	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCVS-04A-01R.gene.quantification.txt	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCVS-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCVS-04A-01R.fusion.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCVS-04A-01R.indel.vcf	3			
TARGET-20-PARCVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCVS-04A-01R	RNA	EFO	SRS605610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCVS-04A-01R A31995 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31995	SRX542493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARCVS-04A-01R A31995 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2005-1./A31995.fastq	SRR1791158	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1791158/SRR1791158.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31995_1_lane_dupsFlagged.bam	SRR1286893	@dbgap@:reads/SRP012000/SRS605610/SRX542493/SRR1286893/SRR1286893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCVS-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-04A-02R.exon.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-04A-02R.gene.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-04A-02R.isoform.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCZL-04A-02R.fusion.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCZL-04A-02R.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-04A-02R	RNA	EFO	SRS607426		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-04A-02R A34428 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34428	SRX543496	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARCZL-04A-02R A34428 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2420-1./A34428.fastq	SRR1796913	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1796913/SRR1796913.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3ADYACXX_8_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1664641	@dbgap@:reads/SRP012000/SRS607426/SRX543496/SRR1664641/SRR1664641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCZL-04A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-09A-02R.exon.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-09A-02R.gene.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARCZL-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCZL-09A-02R.fusion.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARCZL-09A-02R.indel.vcf	3			
TARGET-20-PARCZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARCZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARCZL-09A-02R	RNA	EFO	SRS605604		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARCZL-09A-02R A31931 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31931	SRX542500	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARCZL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARCZL-09A-02R A31931 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31931.fastq	SRR1796887	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1796887/SRR1796887.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31931_1_lane_dupsFlagged.bam	SRR1286859	@dbgap@:reads/SRP012000/SRS605604/SRX542500/SRR1286859/SRR1286859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARCZL-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_769470.gene.quantification.txt	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_769470_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_769470_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_769470_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_769470_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_769470_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_769470_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_769470_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-01R	RNA	EFO	SRS1054326	AML_769470	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARDDA-09A-01R 1170-SL-0034 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0034	SRX1182055		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARDDA-09A-01R 1170-SL-0034 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARDDA-09A-01R.fastq	SRR2239688	@dbgap@:reads/SRP012000/SRS1054326/SRX1182055/SRR2239688/SRR2239688.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_769470_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDA-09A-02R.exon.quantification.txt	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDA-09A-02R.gene.quantification.txt	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDA-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDA-09A-02R.fusion.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDA-09A-02R.indel.vcf	3			
TARGET-20-PARDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDA-09A-02R	RNA	EFO	SRS380321		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDA-09A-02R A12630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12630	SRX1077677	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARDDA-09A-02R A12630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12630.fastq	SRR2083165	@dbgap@:reads/SRP012000/SRS380321/SRX1077677/SRR2083165/SRR2083165.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARDDA-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-04A-01R.exon.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-04A-01R.gene.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDY-04A-01R.fusion.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDY-04A-01R.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-04A-01R	RNA	EFO	SRS605660		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-04A-01R A32025 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32025	SRX543504	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARDDY-04A-01R A32025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32025.fastq	SRR1791141	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1791141/SRR1791141.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288101	@dbgap@:reads/SRP012000/SRS605660/SRX543504/SRR1288101/SRR1288101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARDDY-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-09A-05R.exon.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-09A-05R.gene.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDDY-09A-05R.isoform.quantification.txt	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDY-09A-05R.fusion.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDDY-09A-05R.indel.vcf	3			
TARGET-20-PARDDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDDY-09A-05R	RNA	EFO	SRS616783		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDDY-09A-05R A34421 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34421	SRX548865	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDDY-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARDDY-09A-05R A34421 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2414-1./A34421.fastq	SRR1796862	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1796862/SRR1796862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_5_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664642	@dbgap@:reads/SRP012000/SRS616783/SRX548865/SRR1664642/SRR1664642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARDDY-09A-05R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDMG-09A-03R.exon.quantification.txt	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDMG-09A-03R.gene.quantification.txt	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDMG-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDMG-09A-03R.fusion.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDMG-09A-03R.indel.vcf	3			
TARGET-20-PARDMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDMG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDMG-09A-03R	RNA	EFO	SRS605565		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDMG-09A-03R A31921 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31921	SRX542535	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDMG-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARDMG-09A-03R A31921 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31921.fastq	SRR1791121	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1791121/SRR1791121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31921_1_lane_dupsFlagged.bam	SRR1286891	@dbgap@:reads/SRP012000/SRS605565/SRX542535/SRR1286891/SRR1286891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARDMG-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDZW-09A-01R.exon.quantification.txt	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDZW-09A-01R.gene.quantification.txt	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARDZW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDZW-09A-01R.fusion.vcf	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARDZW-09A-01R.indel.vcf	3			
TARGET-20-PARDZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARDZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARDZW-09A-01R	RNA	EFO	SRS380313		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARDZW-09A-01R A12562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12562	SRX1077633	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARDZW-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARDZW-09A-01R A12562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3328-1./A12562.fastq	SRR2083154	@dbgap@:reads/SRP012000/SRS380313/SRX1077633/SRR2083154/SRR2083154.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARDZW-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAREFM-09A-02R.exon.quantification.txt	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAREFM-09A-02R.gene.quantification.txt	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PAREFM-09A-02R.isoform.quantification.txt	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAREFM-09A-02R.fusion.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PAREFM-09A-02R.indel.vcf	3			
TARGET-20-PAREFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAREFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAREFM-09A-02R	RNA	EFO	SRS380422		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PAREFM-09A-02R A12611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12611	SRX1077646	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PAREFM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PAREFM-09A-02R A12611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12611.fastq	SRR2083147	@dbgap@:reads/SRP012000/SRS380422/SRX1077646/SRR2083147/SRR2083147.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PAREFM-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_770295.gene.quantification.txt	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_770295_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_770295_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_770295_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_770295_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_770295_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_770295_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_770295_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-01R	RNA	EFO	SRS1054303	AML_770295	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARENB-09A-01R 1170-SL-0032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0032	SRX1182056		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARENB-09A-01R 1170-SL-0032 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARENB-09A-01R.fastq	SRR2239689	@dbgap@:reads/SRP012000/SRS1054303/SRX1182056/SRR2239689/SRR2239689.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_770295_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARENB-09A-03R.exon.quantification.txt	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARENB-09A-03R.gene.quantification.txt	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARENB-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARENB-09A-03R.fusion.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARENB-09A-03R.indel.vcf	3			
TARGET-20-PARENB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARENB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARENB-09A-03R	RNA	EFO	SRS616790		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARENB-09A-03R A34422 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34422	SRX548922	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARENB-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARENB-09A-03R A34422 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34422.fastq	SRR1796912	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1796912/SRR1796912.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34422_1_lane_dupsFlagged.bam	SRR1294287	@dbgap@:reads/SRP012000/SRS616790/SRX548922/SRR1294287/SRR1294287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARENB-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-04A-01R.exon.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-04A-01R.gene.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARFAL-04A-01R.fusion.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARFAL-04A-01R.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-04A-01R	RNA	EFO	SRS605627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-04A-01R A32022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32022	SRX543489	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARFAL-04A-01R A32022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1962-1./A32022.fastq	SRR1791162	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1791162/SRR1791162.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_4_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288108	@dbgap@:reads/SRP012000/SRS605627/SRX543489/SRR1288108/SRR1288108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARFAL-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-09A-05R.exon.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-09A-05R.gene.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARFAL-09A-05R.isoform.quantification.txt	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARFAL-09A-05R.fusion.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARFAL-09A-05R.indel.vcf	3			
TARGET-20-PARFAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFAL-09A-05R	RNA	EFO	SRS616787		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARFAL-09A-05R A34423 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34423	SRX548887	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARFAL-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PARFAL-09A-05R A34423 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2417-1./A34423.fastq	SRR1796894	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1796894/SRR1796894.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37FTACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1664631	@dbgap@:reads/SRP012000/SRS616787/SRX548887/SRR1664631/SRR1664631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARFAL-09A-05R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_770716.gene.quantification.txt	3			
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_770716_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_770716_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_770716_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_770716_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_770716_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_770716_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_770716_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARFGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARFGK-09A-01R	RNA	EFO	SRS1054325	AML_770716	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARFGK-09A-01R 1170-SL-0009 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0009	SRX1182057		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARFGK-09A-01R 1170-SL-0009 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARFGK-09A-01R.fastq	SRR2239690	@dbgap@:reads/SRP012000/SRS1054325/SRX1182057/SRR2239690/SRR2239690.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_770716_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGTL-09A-02R.exon.quantification.txt	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGTL-09A-02R.gene.quantification.txt	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGTL-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARGTL-09A-02R.fusion.vcf	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARGTL-09A-02R.indel.vcf	3			
TARGET-20-PARGTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGTL-09A-02R	RNA	EFO	SRS380406		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGTL-09A-02R A12565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12565	SRX1077628	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGTL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARGTL-09A-02R A12565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3321-1./A12565.fastq	SRR2083192	@dbgap@:reads/SRP012000/SRS380406/SRX1077628/SRR2083192/SRR2083192.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARGTL-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGVC-03A-03R.exon.quantification.txt	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGVC-03A-03R.gene.quantification.txt	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARGVC-03A-03R.isoform.quantification.txt	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARGVC-03A-03R.fusion.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARGVC-03A-03R.indel.vcf	3			
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-03R	RNA	EFO	SRS380361		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARGVC-03A-03R A12612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12612	SRX548888	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARGVC-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARGVC-03A-03R A12612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1896-1./A12612.fastq	SRR1810603	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1810603/SRR1810603.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_7_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294263	@dbgap@:reads/SRP012000/SRS380361/SRX548888/SRR1294263/SRR1294263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARGVC-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHBA-03A-02R.exon.quantification.txt	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHBA-03A-02R.gene.quantification.txt	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHBA-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHBA-03A-02R.fusion.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHBA-03A-02R.indel.vcf	3			
TARGET-20-PARHBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHBA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHBA-03A-02R	RNA	EFO	SRS380326		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHBA-03A-02R A12566 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12566	SRX1077660	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHBA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHBA-03A-02R A12566 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3320-1./A12566.fastq	SRR2083136	@dbgap@:reads/SRP012000/SRS380326/SRX1077660/SRR2083136/SRR2083136.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARHBA-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHJV-09A-01R.exon.quantification.txt	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHJV-09A-01R.gene.quantification.txt	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHJV-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHJV-09A-01R.fusion.vcf	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHJV-09A-01R.indel.vcf	3			
TARGET-20-PARHJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHJV-09A-01R	RNA	EFO	SRS380449		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHJV-09A-01R A12567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12567	SRX1077689	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHJV-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHJV-09A-01R A12567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3336-1./A12567.fastq	SRR2083170	@dbgap@:reads/SRP012000/SRS380449/SRX1077689/SRR2083170/SRR2083170.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARHJV-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_772076.gene.quantification.txt	3			
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_772076_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_772076_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_772076_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_772076_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_772076_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_772076_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_772076_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARHPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHPP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHPP-03A-01R	RNA	EFO	SRS1054324	AML_772076	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARHPP-03A-01R 1170-SL-0003 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0003	SRX1182058		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARHPP-03A-01R 1170-SL-0003 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARHPP-03A-01R.fastq	SRR2239691	@dbgap@:reads/SRP012000/SRS1054324/SRX1182058/SRR2239691/SRR2239691.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_772076_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVI-03A-03R.exon.quantification.txt	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVI-03A-03R.gene.quantification.txt	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVI-03A-03R.isoform.quantification.txt	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHVI-03A-03R.fusion.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHVI-03A-03R.indel.vcf	3			
TARGET-20-PARHVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVI-03A-03R	RNA	EFO	SRS380398		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVI-03A-03R A12568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12568	SRX1077704	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVI-03A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARHVI-03A-03R A12568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3325-1./A12568.fastq	SRR2083134	@dbgap@:reads/SRP012000/SRS380398/SRX1077704/SRR2083134/SRR2083134.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARHVI-03A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVK-09A-04R.exon.quantification.txt	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVK-09A-04R.gene.quantification.txt	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARHVK-09A-04R.isoform.quantification.txt	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHVK-09A-04R.fusion.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARHVK-09A-04R.indel.vcf	3			
TARGET-20-PARHVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARHVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARHVK-09A-04R	RNA	EFO	SRS380271		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARHVK-09A-04R A12569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12569	SRX548917	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARHVK-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARHVK-09A-04R A12569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1872-1./A12569.fastq	SRR1810626	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1810626/SRR1810626.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294292	@dbgap@:reads/SRP012000/SRS380271/SRX548917/SRR1294292/SRR1294292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARHVK-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIHK-03A-03R.exon.quantification.txt	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIHK-03A-03R.gene.quantification.txt	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIHK-03A-03R.isoform.quantification.txt	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIHK-03A-03R.fusion.vcf	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIHK-03A-03R.indel.vcf	3			
TARGET-20-PARIHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIHK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIHK-03A-03R	RNA	EFO	SRS605598		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIHK-03A-03R A31933 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31933	SRX542488	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIHK-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARIHK-03A-03R A31933 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31933.fastq	SRR1796870	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1796870/SRR1796870.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31933_1_lane_dupsFlagged.bam	SRR1286876	@dbgap@:reads/SRP012000/SRS605598/SRX542488/SRR1286876/SRR1286876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARIHK-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIMT-03A-01R.exon.quantification.txt	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIMT-03A-01R.gene.quantification.txt	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIMT-03A-01R.isoform.quantification.txt	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIMT-03A-01R.fusion.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIMT-03A-01R.indel.vcf	3			
TARGET-20-PARIMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIMT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIMT-03A-01R	RNA	EFO	SRS605606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIMT-03A-01R A31952 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31952	SRX542458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIMT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIMT-03A-01R A31952 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31952.fastq	SRR1796888	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1796888/SRR1796888.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31952_1_lane_dupsFlagged.bam	SRR1286915	@dbgap@:reads/SRP012000/SRS605606/SRX542458/SRR1286915/SRR1286915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARIMT-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIZR-03A-02R.exon.quantification.txt	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIZR-03A-02R.gene.quantification.txt	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARIZR-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIZR-03A-02R.fusion.vcf	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARIZR-03A-02R.indel.vcf	3			
TARGET-20-PARIZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIZR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIZR-03A-02R	RNA	EFO	SRS605586		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARIZR-03A-02R A31953 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31953	SRX542523	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARIZR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARIZR-03A-02R A31953 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31953.fastq	SRR1796915	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1796915/SRR1796915.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31953_1_lane_dupsFlagged.bam	SRR1286909	@dbgap@:reads/SRP012000/SRS605586/SRX542523/SRR1286909/SRR1286909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARIZR-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJCR-09A-01R.exon.quantification.txt	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJCR-09A-01R.gene.quantification.txt	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJCR-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJCR-09A-01R.fusion.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJCR-09A-01R.indel.vcf	3			
TARGET-20-PARJCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJCR-09A-01R	RNA	EFO	SRS380336		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJCR-09A-01R A12570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12570	SRX548924	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJCR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJCR-09A-01R A12570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12570.fastq	SRR1810617	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1810617/SRR1810617.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294281	@dbgap@:reads/SRP012000/SRS380336/SRX548924/SRR1294281/SRR1294281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARJCR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJWH-09A-01R.exon.quantification.txt	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJWH-09A-01R.gene.quantification.txt	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJWH-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJWH-09A-01R.fusion.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJWH-09A-01R.indel.vcf	3			
TARGET-20-PARJWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJWH-09A-01R	RNA	EFO	SRS380441		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJWH-09A-01R A12653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12653	SRX1077622	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJWH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARJWH-09A-01R A12653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12653.fastq	SRR2083129	@dbgap@:reads/SRP012000/SRS380441/SRX1077622/SRR2083129/SRR2083129.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARJWH-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJYP-03A-01R.exon.quantification.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJYP-03A-01R.gene.quantification.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARJYP-03A-01R.isoform.quantification.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJYP-03A-01R.fusion.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARJYP-03A-01R.indel.vcf	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARJYP-03A-01R A12571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12571	SRX548898	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARJYP-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PARJYP-03A-01R A12571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12571.fastq	SRR1810633	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1810633/SRR1810633.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294232	@dbgap@:reads/SRP012000/SRS380418/SRX548898/SRR1294232/SRR1294232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARJYP-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_773431.gene.quantification.txt	3			
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_773431_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_773431_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_773431_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_773431_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_773431_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_773431_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_773431_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARJYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARJYP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARJYP-03A-01R	RNA	EFO	SRS380418	AML_773431	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARJYP-03A-01R 1170-SL-0002 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0002	SRX1182059		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARJYP-03A-01R 1170-SL-0002 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARJYP-03A-01R.fastq	SRR2239692	@dbgap@:reads/SRP012000/SRS380418/SRX1182059/SRR2239692/SRR2239692.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_773431_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKCX-09A-03R.exon.quantification.txt	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKCX-09A-03R.gene.quantification.txt	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKCX-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARKCX-09A-03R.fusion.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARKCX-09A-03R.indel.vcf	3			
TARGET-20-PARKCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKCX-09A-03R	RNA	EFO	SRS605616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKCX-09A-03R A31981 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31981	SRX542502	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKCX-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PARKCX-09A-03R A31981 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31981.fastq	SRR1796924	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1796924/SRR1796924.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31981_1_lane_dupsFlagged.bam	SRR1286901	@dbgap@:reads/SRP012000/SRS605616/SRX542502/SRR1286901/SRR1286901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARKCX-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKFB-09A-02R.exon.quantification.txt	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKFB-09A-02R.gene.quantification.txt	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARKFB-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARKFB-09A-02R.fusion.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARKFB-09A-02R.indel.vcf	3			
TARGET-20-PARKFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARKFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARKFB-09A-02R	RNA	EFO	SRS380310		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARKFB-09A-02R A12572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12572	SRX1077693	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARKFB-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARKFB-09A-02R A12572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3324-1./A12572.fastq	SRR2083117	@dbgap@:reads/SRP012000/SRS380310/SRX1077693/SRR2083117/SRR2083117.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARKFB-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLMY-09A-01R.exon.quantification.txt	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLMY-09A-01R.gene.quantification.txt	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLMY-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLMY-09A-01R.fusion.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLMY-09A-01R.indel.vcf	3			
TARGET-20-PARLMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLMY-09A-01R	RNA	EFO	SRS380341		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLMY-09A-01R A12657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12657	SRX1077617	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLMY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARLMY-09A-01R A12657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12657.fastq	SRR2083125	@dbgap@:reads/SRP012000/SRS380341/SRX1077617/SRR2083125/SRR2083125.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARLMY-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLSW-09A-02R.exon.quantification.txt	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLSW-09A-02R.gene.quantification.txt	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLSW-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLSW-09A-02R.fusion.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLSW-09A-02R.indel.vcf	3			
TARGET-20-PARLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLSW-09A-02R	RNA	EFO	SRS380419		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLSW-09A-02R A12573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	209	A12573	SRX1077639	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLSW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-20-PARLSW-09A-02R A12573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3319-1./A12573.fastq	SRR2083106	@dbgap@:reads/SRP012000/SRS380419/SRX1077639/SRR2083106/SRR2083106.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARLSW-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLVL-04A-02R.exon.quantification.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLVL-04A-02R.gene.quantification.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARLVL-04A-02R.isoform.quantification.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLVL-04A-02R.fusion.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARLVL-04A-02R.indel.vcf	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-04A-02R	RNA	EFO	SRS605657		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARLVL-04A-02R A32037 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32037	SRX543487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARLVL-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARLVL-04A-02R A32037 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32037.fastq	SRR1796872	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1796872/SRR1796872.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288128	@dbgap@:reads/SRP012000/SRS605657/SRX543487/SRR1288128/SRR1288128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARLVL-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_774511.gene.quantification.txt	3			
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_774511_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_774511_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_774511_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_774511_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_774511_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_774511_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_774511_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARLVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARLVL-09A-01R	RNA	EFO	SRS1054323	AML_774511	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARLVL-09A-01R 1170-SL-0017 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0017	SRX1182060		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARLVL-09A-01R 1170-SL-0017 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARLVL-09A-01R.fastq	SRR2239693	@dbgap@:reads/SRP012000/SRS1054323/SRX1182060/SRR2239693/SRR2239693.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_774511_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMME-09A-02R.exon.quantification.txt	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMME-09A-02R.gene.quantification.txt	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMME-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMME-09A-02R.fusion.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMME-09A-02R.indel.vcf	3			
TARGET-20-PARMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMME-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMME-09A-02R	RNA	EFO	SRS380436		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMME-09A-02R A12574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12574	SRX1077669	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMME-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARMME-09A-02R A12574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12574.fastq	SRR2083193	@dbgap@:reads/SRP012000/SRS380436/SRX1077669/SRR2083193/SRR2083193.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARMME-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZC-09A-02R.exon.quantification.txt	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZC-09A-02R.gene.quantification.txt	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZC-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMZC-09A-02R.fusion.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMZC-09A-02R.indel.vcf	3			
TARGET-20-PARMZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZC-09A-02R	RNA	EFO	SRS380316		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZC-09A-02R A12575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12575	SRX1077658	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARMZC-09A-02R A12575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3367-1./A12575.fastq	SRR2083197	@dbgap@:reads/SRP012000/SRS380316/SRX1077658/SRR2083197/SRR2083197.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARMZC-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_775184.gene.quantification.txt	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_775184_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_775184_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_775184_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_775184_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_775184_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_775184_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_775184_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-01R	RNA	EFO	SRS1054322	AML_775184	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARMZF-09A-01R 1170-SL-0051 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0051	SRX1182061		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARMZF-09A-01R 1170-SL-0051 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARMZF-09A-01R.fastq	SRR2239694	@dbgap@:reads/SRP012000/SRS1054322/SRX1182061/SRR2239694/SRR2239694.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_775184_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZF-09A-02R.exon.quantification.txt	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZF-09A-02R.gene.quantification.txt	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARMZF-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMZF-09A-02R.fusion.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARMZF-09A-02R.indel.vcf	3			
TARGET-20-PARMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARMZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARMZF-09A-02R	RNA	EFO	SRS380267		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARMZF-09A-02R A12576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12576	SRX548901	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARMZF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARMZF-09A-02R A12576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12576.fastq	SRR1810612	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1810612/SRR1810612.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294289	@dbgap@:reads/SRP012000/SRS380267/SRX548901/SRR1294289/SRR1294289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARMZF-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPBF-09A-02R.exon.quantification.txt	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPBF-09A-02R.gene.quantification.txt	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPBF-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPBF-09A-02R.fusion.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPBF-09A-02R.indel.vcf	3			
TARGET-20-PARPBF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPBF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPBF-09A-02R	RNA	EFO	SRS380387		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPBF-09A-02R A12577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12577	SRX1077645	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPBF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARPBF-09A-02R A12577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12577.fastq	SRR2083124	@dbgap@:reads/SRP012000/SRS380387/SRX1077645/SRR2083124/SRR2083124.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARPBF-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPDS-09A-01R.exon.quantification.txt	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPDS-09A-01R.gene.quantification.txt	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPDS-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPDS-09A-01R.fusion.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPDS-09A-01R.indel.vcf	3			
TARGET-20-PARPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPDS-09A-01R	RNA	EFO	SRS605645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPDS-09A-01R A31992 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31992	SRX542467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPDS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARPDS-09A-01R A31992 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31992.fastq	SRR1796899	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1796899/SRR1796899.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31992_1_lane_dupsFlagged.bam	SRR1286873	@dbgap@:reads/SRP012000/SRS605645/SRX542467/SRR1286873/SRR1286873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARPDS-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPVZ-09A-02R.exon.quantification.txt	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPVZ-09A-02R.gene.quantification.txt	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPVZ-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPVZ-09A-02R.fusion.vcf	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPVZ-09A-02R.indel.vcf	3			
TARGET-20-PARPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPVZ-09A-02R	RNA	EFO	SRS380410		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPVZ-09A-02R A12578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12578	SRX1077696	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPVZ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARPVZ-09A-02R A12578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12578.fastq	SRR2083135	@dbgap@:reads/SRP012000/SRS380410/SRX1077696/SRR2083135/SRR2083135.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARPVZ-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPWL-09A-03R.exon.quantification.txt	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPWL-09A-03R.gene.quantification.txt	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARPWL-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPWL-09A-03R.fusion.vcf	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARPWL-09A-03R.indel.vcf	3			
TARGET-20-PARPWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARPWL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARPWL-09A-03R	RNA	EFO	SRS380433		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARPWL-09A-03R A12599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12599	SRX548885	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARPWL-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARPWL-09A-03R A12599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12599.fastq	SRR1810608	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1810608/SRR1810608.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294226	@dbgap@:reads/SRP012000/SRS380433/SRX548885/SRR1294226/SRR1294226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARPWL-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSAN-03A-01R.exon.quantification.txt	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSAN-03A-01R.gene.quantification.txt	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSAN-03A-01R.isoform.quantification.txt	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARSAN-03A-01R.fusion.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARSAN-03A-01R.indel.vcf	3			
TARGET-20-PARSAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSAN-03A-01R	RNA	EFO	SRS605561		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSAN-03A-01R A31991 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31991	SRX542490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSAN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARSAN-03A-01R A31991 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1995-1./A31991.fastq	SRR1791146	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1791146/SRR1791146.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_2_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1286888	@dbgap@:reads/SRP012000/SRS605561/SRX542490/SRR1286888/SRR1286888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARSAN-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSHM-03A-02R.exon.quantification.txt	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSHM-03A-02R.gene.quantification.txt	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARSHM-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARSHM-03A-02R.fusion.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARSHM-03A-02R.indel.vcf	3			
TARGET-20-PARSHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARSHM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARSHM-03A-02R	RNA	EFO	SRS605571		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARSHM-03A-02R A31929 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31929	SRX542473	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARSHM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARSHM-03A-02R A31929 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2020-1./A31929.fastq	SRR1796863	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1796863/SRR1796863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31929_1_lane_dupsFlagged.bam	SRR1286868	@dbgap@:reads/SRP012000/SRS605571/SRX542473/SRR1286868/SRR1286868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARSHM-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-04A-01R.exon.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-04A-01R.gene.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTAL-04A-01R.fusion.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTAL-04A-01R.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-04A-01R	RNA	EFO	SRS605855		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-04A-01R A32005 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32005	SRX543485	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARTAL-04A-01R A32005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32005.fastq	SRR1796929	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1796929/SRR1796929.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288124	@dbgap@:reads/SRP012000/SRS605855/SRX543485/SRR1288124/SRR1288124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTAL-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-09A-02R.exon.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-09A-02R.gene.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTAL-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTAL-09A-02R.fusion.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTAL-09A-02R.indel.vcf	3			
TARGET-20-PARTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTAL-09A-02R	RNA	EFO	SRS605649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTAL-09A-02R A31922 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31922	SRX542503	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTAL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARTAL-09A-02R A31922 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2016-1./A31922.fastq	SRR1796920	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1796920/SRR1796920.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31922_1_lane_dupsFlagged.bam	SRR1286911	@dbgap@:reads/SRP012000/SRS605649/SRX542503/SRR1286911/SRR1286911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTAL-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTST-09A-02R.exon.quantification.txt	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTST-09A-02R.gene.quantification.txt	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTST-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTST-09A-02R.fusion.vcf	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTST-09A-02R.indel.vcf	3			
TARGET-20-PARTST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTST-09A-02R	RNA	EFO	SRS380415		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTST-09A-02R A12621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12621	SRX1077641	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTST-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTST-09A-02R A12621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12621.fastq	SRR2083195	@dbgap@:reads/SRP012000/SRS380415/SRX1077641/SRR2083195/SRR2083195.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTST-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-02R.exon.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-02R.gene.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTXH-09A-02R.fusion.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTXH-09A-02R.indel.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-02R	RNA	EFO	SRS380319		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-02R A12616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12616	SRX1077619	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARTXH-09A-02R A12616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12616.fastq	SRR2083139	@dbgap@:reads/SRP012000/SRS380319/SRX1077619/SRR2083139/SRR2083139.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTXH-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-03R.exon.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-03R.gene.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTXH-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTXH-09A-03R.fusion.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTXH-09A-03R.indel.vcf	3			
TARGET-20-PARTXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTXH-09A-03R	RNA	EFO	SRS380348		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTXH-09A-03R A12663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12663	SRX1077694	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTXH-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTXH-09A-03R A12663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12663.fastq	SRR2083137	@dbgap@:reads/SRP012000/SRS380348/SRX1077694/SRR2083137/SRR2083137.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTXH-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_778078.gene.quantification.txt	3			
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778078_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778078_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778078_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778078_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778078_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778078_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778078_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARTYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYK-09A-01R	RNA	EFO	SRS1054321	AML_778078	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARTYK-09A-01R 1170-SL-0014 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0014	SRX1182062		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARTYK-09A-01R 1170-SL-0014 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARTYK-09A-01R.fastq	SRR2239695	@dbgap@:reads/SRP012000/SRS1054321/SRX1182062/SRR2239695/SRR2239695.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778078_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTYV-09A-03R.exon.quantification.txt	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTYV-09A-03R.gene.quantification.txt	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARTYV-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTYV-09A-03R.fusion.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARTYV-09A-03R.indel.vcf	3			
TARGET-20-PARTYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARTYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARTYV-09A-03R	RNA	EFO	SRS380447		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARTYV-09A-03R A12603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12603	SRX1077703	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARTYV-09A-03R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARTYV-09A-03R A12603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12603.fastq	SRR2083146	@dbgap@:reads/SRP012000/SRS380447/SRX1077703/SRR2083146/SRR2083146.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARTYV-09A-03R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-09A-02R.exon.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-09A-02R.gene.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUBT-09A-02R.fusion.vcf	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUBT-09A-02R.indel.vcf	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-09A-02R	RNA	EFO	SRS605612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-09A-02R A31941 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31941	SRX542501	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUBT-09A-02R A31941 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2027-1./A31941.fastq	SRR1796873	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1796873/SRR1796873.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000); HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31941_1_lane_dupsFlagged.bam	SRR1286890	@dbgap@:reads/SRP012000/SRS605612/SRX542501/SRR1286890/SRR1286890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUBT-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-40A-01R.exon.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-40A-01R.gene.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUBT-40A-01R.isoform.quantification.txt	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUBT-40A-01R.fusion.vcf	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUBT-40A-01R.indel.vcf	3			
TARGET-20-PARUBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUBT-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUBT-40A-01R	RNA	EFO	SRS605618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUBT-40A-01R A32032 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32032	SRX590870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUBT-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-20-PARUBT-40A-01R A32032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A32032.fastq	SRR1796933	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1796933/SRR1796933.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32032_1_lane_dupsFlagged.bam	SRR1379910	@dbgap@:reads/SRP012000/SRS605618/SRX590870/SRR1379910/SRR1379910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUBT-40A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUDL-03A-01R.exon.quantification.txt	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUDL-03A-01R.gene.quantification.txt	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUDL-03A-01R.isoform.quantification.txt	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUDL-03A-01R.fusion.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUDL-03A-01R.indel.vcf	3			
TARGET-20-PARUDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUDL-03A-01R	RNA	EFO	SRS605635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUDL-03A-01R A31954 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31954	SRX542531	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARUDL-03A-01R A31954 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2014-1./A31954.fastq	SRR1796876	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1796876/SRR1796876.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31954_1_lane_dupsFlagged.bam	SRR1286847	@dbgap@:reads/SRP012000/SRS605635/SRX542531/SRR1286847/SRR1286847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUDL-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-04A-01R.exon.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-04A-01R.gene.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUNX-04A-01R.fusion.vcf	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUNX-04A-01R.indel.vcf	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01R	RNA	EFO	SRS605593		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-04A-01R A32039 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32039	SRX543511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PARUNX-04A-01R A32039 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1972-1./A32039.fastq	SRR1796890	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1796890/SRR1796890.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_5_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288118	@dbgap@:reads/SRP012000/SRS605593/SRX543511/SRR1288118/SRR1288118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUNX-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-09A-04R.exon.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-09A-04R.gene.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUNX-09A-04R.isoform.quantification.txt	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUNX-09A-04R.fusion.vcf	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUNX-09A-04R.indel.vcf	3			
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-04R	RNA	EFO	SRS605589		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUNX-09A-04R A31932 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31932	SRX542472	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUNX-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARUNX-09A-04R A31932 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31932.fastq	SRR1796930	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1796930/SRR1796930.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31932_1_lane_dupsFlagged.bam	SRR1286902	@dbgap@:reads/SRP012000/SRS605589/SRX542472/SRR1286902/SRR1286902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUNX-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARURW-09A-02R.exon.quantification.txt	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARURW-09A-02R.gene.quantification.txt	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARURW-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARURW-09A-02R.fusion.vcf	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARURW-09A-02R.indel.vcf	3			
TARGET-20-PARURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARURW-09A-02R	RNA	EFO	SRS380312		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARURW-09A-02R A12579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12579	SRX1077665	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARURW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARURW-09A-02R A12579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3355-1./A12579.fastq	SRR2083130	@dbgap@:reads/SRP012000/SRS380312/SRX1077665/SRR2083130/SRR2083130.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARURW-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_778533.gene.quantification.txt	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778533_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778533_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778533_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778533_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778533_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778533_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778533_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-01R	RNA	EFO	SRS1054320	AML_778533	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUTH-09A-01R 1170-SL-0064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0064	SRX1182063		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUTH-09A-01R 1170-SL-0064 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUTH-09A-01R.fastq	SRR2239696	@dbgap@:reads/SRP012000/SRS1054320/SRX1182063/SRR2239696/SRR2239696.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778533_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUTH-09A-04R.exon.quantification.txt	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUTH-09A-04R.gene.quantification.txt	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUTH-09A-04R.isoform.quantification.txt	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUTH-09A-04R.fusion.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUTH-09A-04R.indel.vcf	3			
TARGET-20-PARUTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUTH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUTH-09A-04R	RNA	EFO	SRS380446		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUTH-09A-04R A12580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12580	SRX548875	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUTH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARUTH-09A-04R A12580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1878-1./A12580.fastq	SRR1810602	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1810602/SRR1810602.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294219	@dbgap@:reads/SRP012000/SRS380446/SRX548875/SRR1294219/SRR1294219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUTH-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_778552.gene.quantification.txt	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778552_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_778552_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778552_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_778552_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778552_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_778552_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778552_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-01R	RNA	EFO	SRS1054319	AML_778552	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARUUB-09A-01R 1170-SL-0033 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0033	SRX1182064		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARUUB-09A-01R 1170-SL-0033 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARUUB-09A-01R.fastq	SRR2239697	@dbgap@:reads/SRP012000/SRS1054319/SRX1182064/SRR2239697/SRR2239697.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_778552_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUUB-09A-02R.exon.quantification.txt	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUUB-09A-02R.gene.quantification.txt	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUUB-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUUB-09A-02R.fusion.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUUB-09A-02R.indel.vcf	3			
TARGET-20-PARUUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUUB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUUB-09A-02R	RNA	EFO	SRS380408		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUUB-09A-02R A34424 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34424	SRX548907	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUUB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-11-07	TARGET-20-PARUUB-09A-02R A34424 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3264-1./A34424.fastq	SRR1796869	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1796869/SRR1796869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C4P94ANXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664633	@dbgap@:reads/SRP012000/SRS380408/SRX548907/SRR1664633/SRR1664633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUUB-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUWX-09A-02R.exon.quantification.txt	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUWX-09A-02R.gene.quantification.txt	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARUWX-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUWX-09A-02R.fusion.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARUWX-09A-02R.indel.vcf	3			
TARGET-20-PARUWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUWX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUWX-09A-02R	RNA	EFO	SRS380390		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARUWX-09A-02R A12581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12581	SRX548916	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARUWX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARUWX-09A-02R A12581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12581.fastq	SRR1810627	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1810627/SRR1810627.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294275	@dbgap@:reads/SRP012000/SRS380390/SRX548916/SRR1294275/SRR1294275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARUWX-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVAI-03A-02R.exon.quantification.txt	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVAI-03A-02R.gene.quantification.txt	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVAI-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVAI-03A-02R.fusion.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVAI-03A-02R.indel.vcf	3			
TARGET-20-PARVAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVAI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVAI-03A-02R	RNA	EFO	SRS605563		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVAI-03A-02R A31979 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31979	SRX542478	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVAI-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARVAI-03A-02R A31979 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2010-1./A31979.fastq	SRR1796877	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1796877/SRR1796877.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31979_1_lane_dupsFlagged.bam	SRR1286869	@dbgap@:reads/SRP012000/SRS605563/SRX542478/SRR1286869/SRR1286869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARVAI-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVSF-09A-02R.exon.quantification.txt	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVSF-09A-02R.gene.quantification.txt	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVSF-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVSF-09A-02R.fusion.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVSF-09A-02R.indel.vcf	3			
TARGET-20-PARVSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVSF-09A-02R	RNA	EFO	SRS380379		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVSF-09A-02R A12648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12648	SRX1077624	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVSF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARVSF-09A-02R A12648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12648.fastq	SRR2083198	@dbgap@:reads/SRP012000/SRS380379/SRX1077624/SRR2083198/SRR2083198.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARVSF-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVUA-03A-02R.exon.quantification.txt	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVUA-03A-02R.gene.quantification.txt	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARVUA-03A-02R.isoform.quantification.txt	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVUA-03A-02R.fusion.vcf	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARVUA-03A-02R.indel.vcf	3			
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-02R	RNA	EFO	SRS380438		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARVUA-03A-02R A12634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12634	SRX1077682	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARVUA-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARVUA-03A-02R A12634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3373-1./A12634.fastq	SRR2083128	@dbgap@:reads/SRP012000/SRS380438/SRX1077682/SRR2083128/SRR2083128.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARVUA-03A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWDZ-09A-01R.exon.quantification.txt	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWDZ-09A-01R.gene.quantification.txt	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWDZ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARWDZ-09A-01R.fusion.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARWDZ-09A-01R.indel.vcf	3			
TARGET-20-PARWDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWDZ-09A-01R	RNA	EFO	SRS605607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWDZ-09A-01R A31977 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31977	SRX542513	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWDZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARWDZ-09A-01R A31977 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31977.fastq	SRR1796881	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1796881/SRR1796881.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286856	@dbgap@:reads/SRP012000/SRS605607/SRX542513/SRR1286856/SRR1286856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARWDZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWXU-09A-02R.exon.quantification.txt	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWXU-09A-02R.gene.quantification.txt	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARWXU-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARWXU-09A-02R.fusion.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARWXU-09A-02R.indel.vcf	3			
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-02R	RNA	EFO	SRS380370		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARWXU-09A-02R A12582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12582	SRX1077614	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARWXU-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PARWXU-09A-02R A12582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12582.fastq	SRR2083183	@dbgap@:reads/SRP012000/SRS380370/SRX1077614/SRR2083183/SRR2083183.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARWXU-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_779900.gene.quantification.txt	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_779900_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_779900_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_779900_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_779900_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_779900_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_779900_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_779900_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-01R	RNA	EFO	SRS1054318	AML_779900	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXBT-09A-01R 1170-SL-0048 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0048	SRX1182065		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXBT-09A-01R 1170-SL-0048 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXBT-09A-01R.fastq	SRR2239698	@dbgap@:reads/SRP012000/SRS1054318/SRX1182065/SRR2239698/SRR2239698.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_779900_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXBT-09A-02R.exon.quantification.txt	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXBT-09A-02R.gene.quantification.txt	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXBT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXBT-09A-02R.fusion.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXBT-09A-02R.indel.vcf	3			
TARGET-20-PARXBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXBT-09A-02R	RNA	EFO	SRS605647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXBT-09A-02R A31974 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31974	SRX542460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXBT-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXBT-09A-02R A31974 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2009-1./A31974.fastq	SRR1796907	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1796907/SRR1796907.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31974_1_lane_dupsFlagged.bam	SRR1286865	@dbgap@:reads/SRP012000/SRS605647/SRX542460/SRR1286865/SRR1286865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARXBT-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXMP-09A-02R.exon.quantification.txt	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXMP-09A-02R.gene.quantification.txt	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXMP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXMP-09A-02R.fusion.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXMP-09A-02R.indel.vcf	3			
TARGET-20-PARXMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXMP-09A-02R	RNA	EFO	SRS605603		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXMP-09A-02R A31951 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31951	SRX542476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXMP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PARXMP-09A-02R A31951 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2019-1./A31951.fastq	SRR1796916	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1796916/SRR1796916.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31951_1_lane_dupsFlagged.bam	SRR1286845	@dbgap@:reads/SRP012000/SRS605603/SRX542476/SRR1286845/SRR1286845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARXMP-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXNG-09A-01R.exon.quantification.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXNG-09A-01R.gene.quantification.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXNG-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXNG-09A-01R.fusion.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXNG-09A-01R.indel.vcf	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXNG-09A-01R A31988 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31988	SRX542527	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXNG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARXNG-09A-01R A31988 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2003-1./A31988.fastq	SRR1791137	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1791137/SRR1791137.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31988_1_lane_dupsFlagged.bam	SRR1286898	@dbgap@:reads/SRP012000/SRS605613/SRX542527/SRR1286898/SRR1286898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARXNG-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_780178.gene.quantification.txt	3			
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780178_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780178_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780178_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780178_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780178_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780178_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780178_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARXNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXNG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXNG-09A-01R	RNA	EFO	SRS605613	AML_780178	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARXNG-09A-01R 1170-SL-0013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0013	SRX1182066		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARXNG-09A-01R 1170-SL-0013 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARXNG-09A-01R.fastq	SRR2239699	@dbgap@:reads/SRP012000/SRS605613/SRX1182066/SRR2239699/SRR2239699.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780178_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXZP-09A-01R.exon.quantification.txt	3			
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXZP-09A-01R.gene.quantification.txt	3			
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARXZP-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXZP-09A-01R.fusion.vcf	3			
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARXZP-09A-01R.indel.vcf	3			
TARGET-20-PARXZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARXZP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARXZP-09A-01R	RNA	EFO	SRS380401		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARXZP-09A-01R A12642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12642	SRX1077623	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARXZP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PARXZP-09A-01R A12642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12642.fastq	SRR2083184	@dbgap@:reads/SRP012000/SRS380401/SRX1077623/SRR2083184/SRR2083184.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARXZP-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_780535.gene.quantification.txt	3			
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780535_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780535_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780535_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780535_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780535_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780535_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780535_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYEB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYEB-09A-01R	RNA	EFO	SRS1054304	AML_780535	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYEB-09A-01R 1170-SL-0010 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0010	SRX1182067		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYEB-09A-01R 1170-SL-0010 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYEB-09A-01R.fastq	SRR2239700	@dbgap@:reads/SRP012000/SRS1054304/SRX1182067/SRR2239700/SRR2239700.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780535_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-03A-01R.exon.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-03A-01R.gene.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-03A-01R.isoform.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYFN-03A-01R.fusion.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYFN-03A-01R.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-03A-01R	RNA	EFO	SRS605620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-03A-01R A31923 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31923	SRX542505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PARYFN-03A-01R A31923 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2000-1./A31923.fastq	SRR1791144	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1791144/SRR1791144.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31923_1_lane_dupsFlagged.bam	SRR1286838	@dbgap@:reads/SRP012000/SRS605620/SRX542505/SRR1286838/SRR1286838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARYFN-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-04A-01R.exon.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-04A-01R.gene.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYFN-04A-01R.isoform.quantification.txt	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYFN-04A-01R.fusion.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYFN-04A-01R.indel.vcf	3			
TARGET-20-PARYFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYFN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYFN-04A-01R	RNA	EFO	SRS605581		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYFN-04A-01R A32006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32006	SRX543476	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYFN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYFN-04A-01R A32006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32006.fastq	SRR1796908	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1796908/SRR1796908.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288092	@dbgap@:reads/SRP012000/SRS605581/SRX543476/SRR1288092/SRR1288092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARYFN-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_780582.gene.quantification.txt	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780582_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_780582_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780582_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_780582_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780582_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_780582_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780582_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-01R	RNA	EFO	SRS1054317	AML_780582	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARYGA-09A-01R 1170-SL-0011 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0011	SRX1182068		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARYGA-09A-01R 1170-SL-0011 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARYGA-09A-01R.fastq	SRR2239701	@dbgap@:reads/SRP012000/SRS1054317/SRX1182068/SRR2239701/SRR2239701.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_780582_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYGA-09A-03R.exon.quantification.txt	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYGA-09A-03R.gene.quantification.txt	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYGA-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYGA-09A-03R.fusion.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYGA-09A-03R.indel.vcf	3			
TARGET-20-PARYGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYGA-09A-03R	RNA	EFO	SRS605577		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYGA-09A-03R A31994 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31994	SRX542477	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYGA-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYGA-09A-03R A31994 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31994.fastq	SRR1796902	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1796902/SRR1796902.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31994_1_lane_dupsFlagged.bam	SRR1286879	@dbgap@:reads/SRP012000/SRS605577/SRX542477/SRR1286879/SRR1286879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARYGA-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-04A-02R.exon.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-04A-02R.gene.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-04A-02R.isoform.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYVW-04A-02R.fusion.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYVW-04A-02R.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-04A-02R	RNA	EFO	SRS605615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-04A-02R A32040 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32040	SRX543493	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PARYVW-04A-02R A32040 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1960-1./A32040.fastq	SRR1791149	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1791149/SRR1791149.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_2_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288120	@dbgap@:reads/SRP012000/SRS605615/SRX543493/SRR1288120/SRR1288120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARYVW-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-09A-01R.exon.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-09A-01R.gene.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARYVW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYVW-09A-01R.fusion.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARYVW-09A-01R.indel.vcf	3			
TARGET-20-PARYVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARYVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARYVW-09A-01R	RNA	EFO	SRS605651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARYVW-09A-01R A31935 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31935	SRX542518	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARYVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PARYVW-09A-01R A31935 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2024-1./A31935.fastq	SRR1796927	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1796927/SRR1796927.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31935_1_lane_dupsFlagged.bam	SRR1286849	@dbgap@:reads/SRP012000/SRS605651/SRX542518/SRR1286849/SRR1286849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARYVW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_781469.gene.quantification.txt	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781469_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781469_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781469_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781469_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781469_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781469_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781469_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-01R	RNA	EFO	SRS1054315	AML_781469	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZUU-09A-01R 1170-SL-0067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0067	SRX1182069		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZUU-09A-01R 1170-SL-0067 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZUU-09A-01R.fastq	SRR2239702	@dbgap@:reads/SRP012000/SRS1054315/SRX1182069/SRR2239702/SRR2239702.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781469_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZUU-09A-04R.exon.quantification.txt	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZUU-09A-04R.gene.quantification.txt	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZUU-09A-04R.isoform.quantification.txt	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARZUU-09A-04R.fusion.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARZUU-09A-04R.indel.vcf	3			
TARGET-20-PARZUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZUU-09A-04R	RNA	EFO	SRS605585		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZUU-09A-04R A31956 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31956	SRX542455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZUU-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PARZUU-09A-04R A31956 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31956.fastq	SRR1796925	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1796925/SRR1796925.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286899	@dbgap@:reads/SRP012000/SRS605585/SRX542455/SRR1286899/SRR1286899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARZUU-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_781506.gene.quantification.txt	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781506_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781506_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781506_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781506_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781506_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781506_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781506_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-01R	RNA	EFO	SRS1054316	AML_781506	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PARZWH-09A-01R 1170-SL-0008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0008	SRX1182070		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PARZWH-09A-01R 1170-SL-0008 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PARZWH-09A-01R.fastq	SRR2239703	@dbgap@:reads/SRP012000/SRS1054316/SRX1182070/SRR2239703/SRR2239703.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781506_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZWH-09A-03R.exon.quantification.txt	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZWH-09A-03R.gene.quantification.txt	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PARZWH-09A-03R.isoform.quantification.txt	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARZWH-09A-03R.fusion.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PARZWH-09A-03R.indel.vcf	3			
TARGET-20-PARZWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARZWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARZWH-09A-03R	RNA	EFO	SRS380345		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PARZWH-09A-03R A12583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	215	A12583	SRX548881	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PARZWH-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PARZWH-09A-03R A12583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1870-1./A12583.fastq	SRR1810578	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1810578/SRR1810578.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_8_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294228	@dbgap@:reads/SRP012000/SRS380345/SRX548881/SRR1294228/SRR1294228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PARZWH-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_781728.gene.quantification.txt	3			
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781728_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_781728_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781728_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_781728_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781728_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_781728_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781728_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASAFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASAFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASAFM-09A-01R	RNA	EFO	SRS976498	AML_781728	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASAFM-09A-01R 1170-SL-0012 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0012	SRX1182071		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASAFM-09A-01R 1170-SL-0012 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASAFM-09A-01R.fastq	SRR2239704	@dbgap@:reads/SRP012000/SRS976498/SRX1182071/SRR2239704/SRR2239704.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_781728_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBBE-04A-02R.exon.quantification.txt	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBBE-04A-02R.gene.quantification.txt	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBBE-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBBE-04A-02R.fusion.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBBE-04A-02R.indel.vcf	3			
TARGET-20-PASBBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBBE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBBE-04A-02R	RNA	EFO	SRS605658		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBBE-04A-02R A32038 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32038	SRX543482	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBBE-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASBBE-04A-02R A32038 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1964-1./A32038.fastq	SRR1791156	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1791156/SRR1791156.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_6_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288106	@dbgap@:reads/SRP012000/SRS605658/SRX543482/SRR1288106/SRR1288106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASBBE-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBHI-09A-01R.exon.quantification.txt	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBHI-09A-01R.gene.quantification.txt	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBHI-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBHI-09A-01R.fusion.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBHI-09A-01R.indel.vcf	3			
TARGET-20-PASBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBHI-09A-01R	RNA	EFO	SRS605856		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBHI-09A-01R A31978 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31978	SRX542534	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBHI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBHI-09A-01R A31978 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2029-1./A31978.fastq	SRR1796900	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1796900/SRR1796900.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31978_1_lane_dupsFlagged.bam	SRR1286885	@dbgap@:reads/SRP012000/SRS605856/SRX542534/SRR1286885/SRR1286885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASBHI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPK-09A-02R.exon.quantification.txt	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPK-09A-02R.gene.quantification.txt	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPK-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBPK-09A-02R.fusion.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBPK-09A-02R.indel.vcf	3			
TARGET-20-PASBPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPK-09A-02R	RNA	EFO	SRS605844		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPK-09A-02R A31980 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31980	SRX542511	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPK-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASBPK-09A-02R A31980 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2030-1./A31980.fastq	SRR1796884	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1796884/SRR1796884.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31980_1_lane_dupsFlagged.bam	SRR1286843	@dbgap@:reads/SRP012000/SRS605844/SRX542511/SRR1286843/SRR1286843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASBPK-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPW-09A-02R.exon.quantification.txt	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPW-09A-02R.gene.quantification.txt	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBPW-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBPW-09A-02R.fusion.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBPW-09A-02R.indel.vcf	3			
TARGET-20-PASBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBPW-09A-02R	RNA	EFO	SRS380380		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBPW-09A-02R A12607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12607	SRX1077638	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBPW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASBPW-09A-02R A12607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12607.fastq	SRR2083149	@dbgap@:reads/SRP012000/SRS380380/SRX1077638/SRR2083149/SRR2083149.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASBPW-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBSB-03A-01R.exon.quantification.txt	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBSB-03A-01R.gene.quantification.txt	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASBSB-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBSB-03A-01R.fusion.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASBSB-03A-01R.indel.vcf	3			
TARGET-20-PASBSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASBSB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASBSB-03A-01R	RNA	EFO	SRS380274		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASBSB-03A-01R A12584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12584	SRX1077627	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASBSB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASBSB-03A-01R A12584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3360-1./A12584.fastq	SRR2083194	@dbgap@:reads/SRP012000/SRS380274/SRX1077627/SRR2083194/SRR2083194.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASBSB-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCCS-09A-01R.exon.quantification.txt	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCCS-09A-01R.gene.quantification.txt	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCCS-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCCS-09A-01R.fusion.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCCS-09A-01R.indel.vcf	3			
TARGET-20-PASCCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCCS-09A-01R	RNA	EFO	SRS380273		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCCS-09A-01R A12625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	217	A12625	SRX548903	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASCCS-09A-01R A12625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1883-1./A12625.fastq	SRR1810622	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1810622/SRR1810622.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294269	@dbgap@:reads/SRP012000/SRS380273/SRX548903/SRR1294269/SRR1294269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASCCS-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCFW-09A-01R.exon.quantification.txt	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCFW-09A-01R.gene.quantification.txt	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCFW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCFW-09A-01R.fusion.vcf	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCFW-09A-01R.indel.vcf	3			
TARGET-20-PASCFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCFW-09A-01R	RNA	EFO	SRS605596		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCFW-09A-01R A31989 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31989	SRX542529	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCFW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCFW-09A-01R A31989 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2012-1./A31989.fastq	SRR1796895	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1796895/SRR1796895.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31989_1_lane_dupsFlagged.bam	SRR1286875	@dbgap@:reads/SRP012000/SRS605596/SRX542529/SRR1286875/SRR1286875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASCFW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-03A-02R.exon.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-03A-02R.gene.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-03A-02R.isoform.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCGR-03A-02R.fusion.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCGR-03A-02R.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-03A-02R	RNA	EFO	SRS605587		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-03A-02R A31924 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31924	SRX542533	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASCGR-03A-02R A31924 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2008-1./A31924.fastq	SRR1791154	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1791154/SRR1791154.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31924_1_lane_dupsFlagged.bam	SRR1286872	@dbgap@:reads/SRP012000/SRS605587/SRX542533/SRR1286872/SRR1286872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASCGR-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-04A-01R.exon.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-04A-01R.gene.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCGR-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCGR-04A-01R.fusion.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCGR-04A-01R.indel.vcf	3			
TARGET-20-PASCGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGR-04A-01R	RNA	EFO	SRS605849		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCGR-04A-01R A32036 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32036	SRX543497	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCGR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCGR-04A-01R A32036 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1967-1./A32036.fastq	SRR1791167	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1791167/SRR1791167.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2GEUACXX_8_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288097	@dbgap@:reads/SRP012000/SRS605849/SRX543497/SRR1288097/SRR1288097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASCGR-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCRZ-04A-01R.exon.quantification.txt	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCRZ-04A-01R.gene.quantification.txt	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASCRZ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCRZ-04A-01R.fusion.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASCRZ-04A-01R.indel.vcf	3			
TARGET-20-PASCRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCRZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCRZ-04A-01R	RNA	EFO	SRS605575		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASCRZ-04A-01R A32007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32007	SRX543499	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASCRZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASCRZ-04A-01R A32007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1971-1./A32007.fastq	SRR1791165	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1791165/SRR1791165.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_4_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288125	@dbgap@:reads/SRP012000/SRS605575/SRX543499/SRR1288125/SRR1288125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASCRZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASDGX-09A-02R.exon.quantification.txt	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASDGX-09A-02R.gene.quantification.txt	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASDGX-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASDGX-09A-02R.fusion.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASDGX-09A-02R.indel.vcf	3			
TARGET-20-PASDGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASDGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASDGX-09A-02R	RNA	EFO	SRS380347		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASDGX-09A-02R A12585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12585	SRX1077637	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASDGX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASDGX-09A-02R A12585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3363-1./A12585.fastq	SRR2083175	@dbgap@:reads/SRP012000/SRS380347/SRX1077637/SRR2083175/SRR2083175.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASDGX-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASECW-09A-04R.exon.quantification.txt	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASECW-09A-04R.gene.quantification.txt	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASECW-09A-04R.isoform.quantification.txt	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASECW-09A-04R.fusion.vcf	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASECW-09A-04R.indel.vcf	3			
TARGET-20-PASECW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASECW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASECW-09A-04R	RNA	EFO	SRS380375		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASECW-09A-04R A12624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12624	SRX1077680	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASECW-09A-04R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASECW-09A-04R A12624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12624.fastq	SRR2083123	@dbgap@:reads/SRP012000/SRS380375/SRX1077680/SRR2083123/SRR2083123.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASECW-09A-04R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEFD-09A-01R.exon.quantification.txt	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEFD-09A-01R.gene.quantification.txt	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEFD-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASEFD-09A-01R.fusion.vcf	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASEFD-09A-01R.indel.vcf	3			
TARGET-20-PASEFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEFD-09A-01R	RNA	EFO	SRS380367		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEFD-09A-01R A12618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	206	A12618	SRX1077631	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEFD-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEFD-09A-01R A12618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3354-1./A12618.fastq	SRR2083186	@dbgap@:reads/SRP012000/SRS380367/SRX1077631/SRR2083186/SRR2083186.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASEFD-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEGC-09A-01R.exon.quantification.txt	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEGC-09A-01R.gene.quantification.txt	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASEGC-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASEGC-09A-01R.fusion.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASEGC-09A-01R.indel.vcf	3			
TARGET-20-PASEGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASEGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASEGC-09A-01R	RNA	EFO	SRS380290		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASEGC-09A-01R A12586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12586	SRX1077691	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASEGC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASEGC-09A-01R A12586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3365-1./A12586.fastq	SRR2083167	@dbgap@:reads/SRP012000/SRS380290/SRX1077691/SRR2083167/SRR2083167.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASEGC-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFEW-09A-05R.exon.quantification.txt	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFEW-09A-05R.gene.quantification.txt	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFEW-09A-05R.isoform.quantification.txt	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFEW-09A-05R.fusion.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFEW-09A-05R.indel.vcf	3			
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-05R	RNA	EFO	SRS605576		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFEW-09A-05R A31975 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31975	SRX542466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFEW-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASFEW-09A-05R A31975 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2004-1./A31975.fastq	SRR1791155	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1791155/SRR1791155.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31975_1_lane_dupsFlagged.bam	SRR1286912	@dbgap@:reads/SRP012000/SRS605576/SRX542466/SRR1286912/SRR1286912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASFEW-09A-05R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFJB-03A-01R.exon.quantification.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFJB-03A-01R.gene.quantification.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFJB-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFJB-03A-01R.fusion.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFJB-03A-01R.indel.vcf	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-03A-01R	RNA	EFO	SRS605567		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFJB-03A-01R A31966 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31966	SRX542516	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFJB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASFJB-03A-01R A31966 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1998-1./A31966.fastq	SRR1791132	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1791132/SRR1791132.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286862	@dbgap@:reads/SRP012000/SRS605567/SRX542516/SRR1286862/SRR1286862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASFJB-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_784743.gene.quantification.txt	3			
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_784743_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_784743_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_784743_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_784743_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_784743_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_784743_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_784743_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASFJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFJB-09A-01R	RNA	EFO	SRS1054305	AML_784743	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASFJB-09A-01R 1170-SL-0056 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0056	SRX1182072		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASFJB-09A-01R 1170-SL-0056 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASFJB-09A-01R.fastq	SRR2239705	@dbgap@:reads/SRP012000/SRS1054305/SRX1182072/SRR2239705/SRR2239705.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_784743_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFLM-09A-01R.exon.quantification.txt	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFLM-09A-01R.gene.quantification.txt	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFLM-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFLM-09A-01R.fusion.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFLM-09A-01R.indel.vcf	3			
TARGET-20-PASFLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFLM-09A-01R	RNA	EFO	SRS380299		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFLM-09A-01R A12632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12632	SRX548876	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASFLM-09A-01R A12632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1880-1./A12632.fastq	SRR1810580	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1810580/SRR1810580.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_2_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294278	@dbgap@:reads/SRP012000/SRS380299/SRX548876/SRR1294278/SRR1294278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASFLM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFNP-09A-02R.exon.quantification.txt	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFNP-09A-02R.gene.quantification.txt	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASFNP-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFNP-09A-02R.fusion.vcf	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASFNP-09A-02R.indel.vcf	3			
TARGET-20-PASFNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFNP-09A-02R	RNA	EFO	SRS380280		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASFNP-09A-02R A12637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12637	SRX1077634	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASFNP-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASFNP-09A-02R A12637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3377-1./A12637.fastq	SRR2083168	@dbgap@:reads/SRP012000/SRS380280/SRX1077634/SRR2083168/SRR2083168.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASFNP-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGGK-03A-01R.exon.quantification.txt	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGGK-03A-01R.gene.quantification.txt	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGGK-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGGK-03A-01R.fusion.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGGK-03A-01R.indel.vcf	3			
TARGET-20-PASGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGGK-03A-01R	RNA	EFO	SRS616788		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGGK-03A-01R A34425 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34425	SRX548890	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGGK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-20-PASGGK-03A-01R A34425 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2418-1./A34425.fastq	SRR1796878	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1796878/SRR1796878.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B9JACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1664640	@dbgap@:reads/SRP012000/SRS616788/SRX548890/SRR1664640/SRR1664640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASGGK-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGMZ-09A-01R.exon.quantification.txt	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGMZ-09A-01R.gene.quantification.txt	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGMZ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGMZ-09A-01R.fusion.vcf	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGMZ-09A-01R.indel.vcf	3			
TARGET-20-PASGMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGMZ-09A-01R	RNA	EFO	SRS380304		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGMZ-09A-01R A12615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12615	SRX548868	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGMZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASGMZ-09A-01R A12615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1874-1./A12615.fastq	SRR1810632	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1810632/SRR1810632.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294282	@dbgap@:reads/SRP012000/SRS380304/SRX548868/SRR1294282/SRR1294282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASGMZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-04A-02R.exon.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-04A-02R.gene.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGWH-04A-02R.fusion.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGWH-04A-02R.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-04A-02R	RNA	EFO	SRS605643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-04A-02R A32008 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32008	SRX543492	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASGWH-04A-02R A32008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1969-1./A32008.fastq	SRR1791160	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1791160/SRR1791160.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_2_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288099	@dbgap@:reads/SRP012000/SRS605643/SRX543492/SRR1288099/SRR1288099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASGWH-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-09A-04R.exon.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-09A-04R.gene.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGWH-09A-04R.isoform.quantification.txt	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGWH-09A-04R.fusion.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGWH-09A-04R.indel.vcf	3			
TARGET-20-PASGWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGWH-09A-04R	RNA	EFO	SRS605564		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGWH-09A-04R A31926 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31926	SRX542487	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGWH-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASGWH-09A-04R A31926 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31926.fastq	SRR1796903	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1796903/SRR1796903.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31926_1_lane_dupsFlagged.bam	SRR1286848	@dbgap@:reads/SRP012000/SRS605564/SRX542487/SRR1286848/SRR1286848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASGWH-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGZS-04A-01R.exon.quantification.txt	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGZS-04A-01R.gene.quantification.txt	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASGZS-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGZS-04A-01R.fusion.vcf	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASGZS-04A-01R.indel.vcf	3			
TARGET-20-PASGZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASGZS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASGZS-04A-01R	RNA	EFO	SRS605661		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASGZS-04A-01R A31996 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31996	SRX542524	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASGZS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASGZS-04A-01R A31996 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31996.fastq	SRR1796917	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1796917/SRR1796917.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286896	@dbgap@:reads/SRP012000/SRS605661/SRX542524/SRR1286896/SRR1286896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASGZS-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHBI-09A-01R.exon.quantification.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHBI-09A-01R.gene.quantification.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHBI-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHBI-09A-01R.fusion.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHBI-09A-01R.indel.vcf	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHBI-09A-01R A12614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12614	SRX548864	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHBI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASHBI-09A-01R A12614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1877-1./A12614.fastq	SRR1810581	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1810581/SRR1810581.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294258	@dbgap@:reads/SRP012000/SRS380358/SRX548864/SRR1294258/SRR1294258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASHBI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_785729.gene.quantification.txt	3			
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_785729_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_785729_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_785729_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_785729_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_785729_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_785729_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_785729_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHBI-09A-01R	RNA	EFO	SRS380358	AML_785729	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASHBI-09A-01R 1170-SL-0035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0035	SRX1182073		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASHBI-09A-01R 1170-SL-0035 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASHBI-09A-01R.fastq	SRR2239706	@dbgap@:reads/SRP012000/SRS380358/SRX1182073/SRR2239706/SRR2239706.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_785729_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHWN-09A-01R.exon.quantification.txt	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHWN-09A-01R.gene.quantification.txt	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHWN-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHWN-09A-01R.fusion.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHWN-09A-01R.indel.vcf	3			
TARGET-20-PASHWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHWN-09A-01R	RNA	EFO	SRS380325		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHWN-09A-01R A12650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12650	SRX1077626	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHWN-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASHWN-09A-01R A12650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12650.fastq	SRR2083159	@dbgap@:reads/SRP012000/SRS380325/SRX1077626/SRR2083159/SRR2083159.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASHWN-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-04A-01R.exon.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-04A-01R.gene.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHYZ-04A-01R.fusion.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHYZ-04A-01R.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-04A-01R	RNA	EFO	SRS605860		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-04A-01R A32027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32027	SRX543494	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASHYZ-04A-01R A32027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32027.fastq	SRR1796864	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1796864/SRR1796864.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288114	@dbgap@:reads/SRP012000/SRS605860/SRX543494/SRR1288114/SRR1288114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASHYZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-09A-03R.exon.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-09A-03R.gene.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASHYZ-09A-03R.isoform.quantification.txt	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHYZ-09A-03R.fusion.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASHYZ-09A-03R.indel.vcf	3			
TARGET-20-PASHYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASHYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASHYZ-09A-03R	RNA	EFO	SRS380403		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASHYZ-09A-03R A12587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12587	SRX548919	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASHYZ-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASHYZ-09A-03R A12587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1887-1./A12587.fastq	SRR1810628	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1810628/SRR1810628.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_1_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294260	@dbgap@:reads/SRP012000/SRS380403/SRX548919/SRR1294260/SRR1294260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASHYZ-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIBG-09A-01R.exon.quantification.txt	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIBG-09A-01R.gene.quantification.txt	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIBG-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIBG-09A-01R.fusion.vcf	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIBG-09A-01R.indel.vcf	3			
TARGET-20-PASIBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIBG-09A-01R	RNA	EFO	SRS605852		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIBG-09A-01R A31986 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31986	SRX542464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIBG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASIBG-09A-01R A31986 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2018-1./A31986.fastq	SRR1796928	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1796928/SRR1796928.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31986_1_lane_dupsFlagged.bam	SRR1286904	@dbgap@:reads/SRP012000/SRS605852/SRX542464/SRR1286904/SRR1286904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASIBG-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIEJ-09A-01R.exon.quantification.txt	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIEJ-09A-01R.gene.quantification.txt	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIEJ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIEJ-09A-01R.fusion.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIEJ-09A-01R.indel.vcf	3			
TARGET-20-PASIEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEJ-09A-01R	RNA	EFO	SRS380359		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIEJ-09A-01R A12639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12639	SRX548855	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASIEJ-09A-01R A12639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1897-1./A12639.fastq	SRR1810630	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1810630/SRR1810630.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5LACXX_8_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294286	@dbgap@:reads/SRP012000/SRS380359/SRX548855/SRR1294286/SRR1294286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASIEJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_786388.gene.quantification.txt	3			
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_786388_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_786388_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_786388_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_786388_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_786388_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_786388_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_786388_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASIEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIEP-09A-01R	RNA	EFO	SRS976197	AML_786388	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASIEP-09A-01R 1170-SL-0022 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0022	SRX1182074		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASIEP-09A-01R 1170-SL-0022 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASIEP-09A-01R.fastq	SRR2239707	@dbgap@:reads/SRP012000/SRS976197/SRX1182074/SRR2239707/SRR2239707.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_786388_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_786543.gene.quantification.txt	3			
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_786543_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_786543_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_786543_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_786543_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_786543_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_786543_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_786543_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASILA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASILA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASILA-09A-01R	RNA	EFO	SRS1054314	AML_786543	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASILA-09A-01R 1170-SL-0061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0061	SRX1182075		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASILA-09A-01R 1170-SL-0061 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASILA-09A-01R.fastq	SRR2239708	@dbgap@:reads/SRP012000/SRS1054314/SRX1182075/SRR2239708/SRR2239708.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_786543_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASINN-04A-02R.exon.quantification.txt	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASINN-04A-02R.gene.quantification.txt	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASINN-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASINN-04A-02R.fusion.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASINN-04A-02R.indel.vcf	3			
TARGET-20-PASINN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASINN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASINN-04A-02R	RNA	EFO	SRS605554		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASINN-04A-02R A31999 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31999	SRX542532	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASINN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASINN-04A-02R A31999 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2011-1./A31999.fastq	SRR1791129	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1791129/SRR1791129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31999_1_lane_dupsFlagged.bam	SRR1286867	@dbgap@:reads/SRP012000/SRS605554/SRX542532/SRR1286867/SRR1286867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASINN-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIZX-09A-01R.exon.quantification.txt	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIZX-09A-01R.gene.quantification.txt	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASIZX-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIZX-09A-01R.fusion.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASIZX-09A-01R.indel.vcf	3			
TARGET-20-PASIZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASIZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASIZX-09A-01R	RNA	EFO	SRS380343		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASIZX-09A-01R A12588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12588	SRX1077695	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASIZX-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASIZX-09A-01R A12588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3368-1./A12588.fastq	SRR2083203	@dbgap@:reads/SRP012000/SRS380343/SRX1077695/SRR2083203/SRR2083203.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASIZX-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJEJ-09A-02R.exon.quantification.txt	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJEJ-09A-02R.gene.quantification.txt	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJEJ-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJEJ-09A-02R.fusion.vcf	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJEJ-09A-02R.indel.vcf	3			
TARGET-20-PASJEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJEJ-09A-02R	RNA	EFO	SRS380425		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJEJ-09A-02R A12589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12589	SRX1077616	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJEJ-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASJEJ-09A-02R A12589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3370-1./A12589.fastq	SRR2083179	@dbgap@:reads/SRP012000/SRS380425/SRX1077616/SRR2083179/SRR2083179.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASJEJ-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJGZ-04A-01R.exon.quantification.txt	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJGZ-04A-01R.gene.quantification.txt	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJGZ-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJGZ-04A-01R.fusion.vcf	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJGZ-04A-01R.indel.vcf	3			
TARGET-20-PASJGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJGZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJGZ-04A-01R	RNA	EFO	SRS605608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJGZ-04A-01R A32031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32031	SRX543507	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJGZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASJGZ-04A-01R A32031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1973-1./A32031.fastq	SRR1791135	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1791135/SRR1791135.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_6_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288095	@dbgap@:reads/SRP012000/SRS605608/SRX543507/SRR1288095/SRR1288095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASJGZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJTM-09A-01R.exon.quantification.txt	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJTM-09A-01R.gene.quantification.txt	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASJTM-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJTM-09A-01R.fusion.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASJTM-09A-01R.indel.vcf	3			
TARGET-20-PASJTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASJTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASJTM-09A-01R	RNA	EFO	SRS605569		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASJTM-09A-01R A31946 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31946	SRX542457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASJTM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASJTM-09A-01R A31946 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31946.fastq	SRR1796898	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1796898/SRR1796898.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1286887	@dbgap@:reads/SRP012000/SRS605569/SRX542457/SRR1286887/SRR1286887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASJTM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASKGH-09A-01R.exon.quantification.txt	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASKGH-09A-01R.gene.quantification.txt	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASKGH-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASKGH-09A-01R.fusion.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASKGH-09A-01R.indel.vcf	3			
TARGET-20-PASKGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKGH-09A-01R	RNA	EFO	SRS380350		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASKGH-09A-01R A12635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12635	SRX1077630	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASKGH-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASKGH-09A-01R A12635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12635.fastq	SRR2083131	@dbgap@:reads/SRP012000/SRS380350/SRX1077630/SRR2083131/SRR2083131.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASKGH-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_787870.gene.quantification.txt	3			
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_787870_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_787870_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_787870_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_787870_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_787870_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_787870_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_787870_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASKUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASKUA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASKUA-09A-01R	RNA	EFO	SRS1054313	AML_787870	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASKUA-09A-01R 1170-SL-0031 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0031	SRX1182076		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASKUA-09A-01R 1170-SL-0031 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASKUA-09A-01R.fastq	SRR2239709	@dbgap@:reads/SRP012000/SRS1054313/SRX1182076/SRR2239709/SRR2239709.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_787870_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLDL-09A-02R.exon.quantification.txt	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLDL-09A-02R.gene.quantification.txt	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLDL-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLDL-09A-02R.fusion.vcf	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLDL-09A-02R.indel.vcf	3			
TARGET-20-PASLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLDL-09A-02R	RNA	EFO	SRS380393		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLDL-09A-02R A12590 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12590	SRX1077613	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLDL-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLDL-09A-02R A12590 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3372-1./A12590.fastq	SRR2083156	@dbgap@:reads/SRP012000/SRS380393/SRX1077613/SRR2083156/SRR2083156.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASLDL-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLSD-03A-01R.exon.quantification.txt	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLSD-03A-01R.gene.quantification.txt	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLSD-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLSD-03A-01R.fusion.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLSD-03A-01R.indel.vcf	3			
TARGET-20-PASLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLSD-03A-01R	RNA	EFO	SRS380344		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLSD-03A-01R A12619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12619	SRX548923	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLSD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASLSD-03A-01R A12619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1866-1./A12619.fastq	SRR1810619	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1810619/SRR1810619.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000, gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_4_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294276	@dbgap@:reads/SRP012000/SRS380344/SRX548923/SRR1294276/SRR1294276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASLSD-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLTF-09A-02R.exon.quantification.txt	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLTF-09A-02R.gene.quantification.txt	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLTF-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLTF-09A-02R.fusion.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLTF-09A-02R.indel.vcf	3			
TARGET-20-PASLTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLTF-09A-02R	RNA	EFO	SRS380278		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLTF-09A-02R A12591 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12591	SRX1077629	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLTF-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLTF-09A-02R A12591 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12591.fastq	SRR2083191	@dbgap@:reads/SRP012000/SRS380278/SRX1077629/SRR2083191/SRR2083191.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASLTF-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLYX-09A-02R.exon.quantification.txt	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLYX-09A-02R.gene.quantification.txt	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASLYX-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLYX-09A-02R.fusion.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASLYX-09A-02R.indel.vcf	3			
TARGET-20-PASLYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASLYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASLYX-09A-02R	RNA	EFO	SRS380338		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASLYX-09A-02R A12592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12592	SRX1077671	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASLYX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASLYX-09A-02R A12592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3376-1./A12592.fastq	SRR2083174	@dbgap@:reads/SRP012000/SRS380338/SRX1077671/SRR2083174/SRR2083174.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASLYX-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMGW-09A-01R.exon.quantification.txt	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMGW-09A-01R.gene.quantification.txt	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMGW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMGW-09A-01R.fusion.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMGW-09A-01R.indel.vcf	3			
TARGET-20-PASMGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMGW-09A-01R	RNA	EFO	SRS380397		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMGW-09A-01R A12627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12627	SRX548889	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMGW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASMGW-09A-01R A12627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12627.fastq	SRR1810579	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1810579/SRR1810579.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%, exon-intron ratio < 2, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294283	@dbgap@:reads/SRP012000/SRS380397/SRX548889/SRR1294283/SRR1294283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASMGW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMHY-03A-03R.exon.quantification.txt	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMHY-03A-03R.gene.quantification.txt	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMHY-03A-03R.isoform.quantification.txt	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMHY-03A-03R.fusion.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMHY-03A-03R.indel.vcf	3			
TARGET-20-PASMHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMHY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMHY-03A-03R	RNA	EFO	SRS605625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMHY-03A-03R A31919 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31919	SRX542454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMHY-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASMHY-03A-03R A31919 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2017-1./A31919.fastq	SRR1796909	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1796909/SRR1796909.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31919_1_lane_dupsFlagged.bam	SRR1286918	@dbgap@:reads/SRP012000/SRS605625/SRX542454/SRR1286918/SRR1286918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASMHY-03A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMYS-04A-02R.exon.quantification.txt	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMYS-04A-02R.gene.quantification.txt	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASMYS-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMYS-04A-02R.fusion.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASMYS-04A-02R.indel.vcf	3			
TARGET-20-PASMYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASMYS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASMYS-04A-02R	RNA	EFO	SRS605641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASMYS-04A-02R A32041 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32041	SRX543479	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASMYS-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASMYS-04A-02R A32041 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1963-1./A32041.fastq	SRR1791151	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1791151/SRR1791151.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288091	@dbgap@:reads/SRP012000/SRS605641/SRX543479/SRR1288091/SRR1288091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASMYS-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASNIY-09A-02R.exon.quantification.txt	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASNIY-09A-02R.gene.quantification.txt	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASNIY-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASNIY-09A-02R.fusion.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASNIY-09A-02R.indel.vcf	3			
TARGET-20-PASNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASNIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASNIY-09A-02R	RNA	EFO	SRS380298		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASNIY-09A-02R A12606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	204	A12606	SRX1077659	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASNIY-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASNIY-09A-02R A12606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3366-1./A12606.fastq	SRR2083114	@dbgap@:reads/SRP012000/SRS380298/SRX1077659/SRR2083114/SRR2083114.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASNIY-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPFE-09A-01R.exon.quantification.txt	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPFE-09A-01R.gene.quantification.txt	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPFE-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPFE-09A-01R.fusion.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPFE-09A-01R.indel.vcf	3			
TARGET-20-PASPFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPFE-09A-01R	RNA	EFO	SRS380445		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPFE-09A-01R A12629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12629	SRX1077702	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPFE-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPFE-09A-01R A12629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3364-1./A12629.fastq	SRR2083161	@dbgap@:reads/SRP012000/SRS380445/SRX1077702/SRR2083161/SRR2083161.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPFE-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_789920.gene.quantification.txt	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_789920_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_789920_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_789920_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_789920_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_789920_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_789920_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_789920_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-01R	RNA	EFO	SRS1054312	AML_789920	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPGA-09A-01R 1170-SL-0006 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0006	SRX1182077		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPGA-09A-01R 1170-SL-0006 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPGA-09A-01R.fastq	SRR2239710	@dbgap@:reads/SRP012000/SRS1054312/SRX1182077/SRR2239710/SRR2239710.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_789920_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPGA-09A-02R.exon.quantification.txt	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPGA-09A-02R.gene.quantification.txt	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPGA-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPGA-09A-02R.fusion.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPGA-09A-02R.indel.vcf	3			
TARGET-20-PASPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPGA-09A-02R	RNA	EFO	SRS605858		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPGA-09A-02R A31947 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31947	SRX542525	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPGA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASPGA-09A-02R A31947 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2028-1./A31947.fastq	SRR1796926	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1796926/SRR1796926.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31947_1_lane_dupsFlagged.bam	SRR1286860	@dbgap@:reads/SRP012000/SRS605858/SRX542525/SRR1286860/SRR1286860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPGA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_790021.gene.quantification.txt	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790021_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790021_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790021_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790021_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790021_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790021_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790021_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-01R	RNA	EFO	SRS1054306	AML_790021	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPKE-09A-01R 1170-SL-0063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0063	SRX1182078		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPKE-09A-01R 1170-SL-0063 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPKE-09A-01R.fastq	SRR2239711	@dbgap@:reads/SRP012000/SRS1054306/SRX1182078/SRR2239711/SRR2239711.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790021_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPKE-09A-04R.exon.quantification.txt	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPKE-09A-04R.gene.quantification.txt	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPKE-09A-04R.isoform.quantification.txt	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPKE-09A-04R.fusion.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPKE-09A-04R.indel.vcf	3			
TARGET-20-PASPKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPKE-09A-04R	RNA	EFO	SRS380329		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPKE-09A-04R A12610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12610	SRX548883	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPKE-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASPKE-09A-04R A12610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1890-1./A12610.fastq	SRR1810642	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1810642/SRR1810642.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_4_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294216	@dbgap@:reads/SRP012000/SRS380329/SRX548883/SRR1294216/SRR1294216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPKE-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-04A-01R.exon.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-04A-01R.gene.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPLU-04A-01R.fusion.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPLU-04A-01R.indel.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-04A-01R	RNA	EFO	SRS605588		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-04A-01R A31998 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31998	SRX542468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASPLU-04A-01R A31998 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1992-1./A31998.fastq	SRR1796923	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1796923/SRR1796923.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286840	@dbgap@:reads/SRP012000/SRS605588/SRX542468/SRR1286840/SRR1286840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPLU-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_790059.gene.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790059_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790059_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790059_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790059_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790059_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790059_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790059_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-01R	RNA	EFO	SRS1054311	AML_790059	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPLU-09A-01R 1170-SL-0030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0030	SRX1182079		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPLU-09A-01R 1170-SL-0030 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPLU-09A-01R.fastq	SRR2239712	@dbgap@:reads/SRP012000/SRS1054311/SRX1182079/SRR2239712/SRR2239712.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790059_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-09A-02R.exon.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-09A-02R.gene.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPLU-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPLU-09A-02R.fusion.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPLU-09A-02R.indel.vcf	3			
TARGET-20-PASPLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPLU-09A-02R	RNA	EFO	SRS605609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPLU-09A-02R A31985 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31985	SRX542510	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPLU-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-20-PASPLU-09A-02R A31985 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2006-1..1/A31985.fastq	SRR1796879	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1796879/SRR1796879.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31985_1_lane_dupsFlagged.bam	SRR1286855	@dbgap@:reads/SRP012000/SRS605609/SRX542510/SRR1286855/SRR1286855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPLU-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPSV-09A-02R.exon.quantification.txt	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPSV-09A-02R.gene.quantification.txt	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPSV-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPSV-09A-02R.fusion.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPSV-09A-02R.indel.vcf	3			
TARGET-20-PASPSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPSV-09A-02R	RNA	EFO	SRS380364		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPSV-09A-02R A12593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12593	SRX1077699	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPSV-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPSV-09A-02R A12593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3378-1./A12593.fastq	SRR2083177	@dbgap@:reads/SRP012000/SRS380364/SRX1077699/SRR2083177/SRR2083177.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPSV-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_790201.gene.quantification.txt	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790201_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790201_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790201_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790201_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790201_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790201_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790201_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-01R	RNA	EFO	SRS1054310	AML_790201	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASPTM-09A-01R 1170-SL-0007 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0007	SRX1182080		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASPTM-09A-01R 1170-SL-0007 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASPTM-09A-01R.fastq	SRR2239713	@dbgap@:reads/SRP012000/SRS1054310/SRX1182080/SRR2239713/SRR2239713.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790201_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTM-09A-03R.exon.quantification.txt	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTM-09A-03R.gene.quantification.txt	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTM-09A-03R.isoform.quantification.txt	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPTM-09A-03R.fusion.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPTM-09A-03R.indel.vcf	3			
TARGET-20-PASPTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTM-09A-03R	RNA	EFO	SRS605650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTM-09A-03R A31942 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31942	SRX542522	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTM-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASPTM-09A-03R A31942 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2023-1./A31942.fastq	SRR1796861	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1796861/SRR1796861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31942_1_lane_dupsFlagged.bam	SRR1286836	@dbgap@:reads/SRP012000/SRS605650/SRX542522/SRR1286836/SRR1286836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPTM-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTW-09A-02R.exon.quantification.txt	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTW-09A-02R.gene.quantification.txt	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPTW-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPTW-09A-02R.fusion.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPTW-09A-02R.indel.vcf	3			
TARGET-20-PASPTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPTW-09A-02R	RNA	EFO	SRS380322		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPTW-09A-02R A12601 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12601	SRX1077662	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPTW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASPTW-09A-02R A12601 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3361-1./A12601.fastq	SRR2083176	@dbgap@:reads/SRP012000/SRS380322/SRX1077662/SRR2083176/SRR2083176.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPTW-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPWZ-03A-01R.exon.quantification.txt	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPWZ-03A-01R.gene.quantification.txt	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASPWZ-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPWZ-03A-01R.fusion.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASPWZ-03A-01R.indel.vcf	3			
TARGET-20-PASPWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASPWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASPWZ-03A-01R	RNA	EFO	SRS380269		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASPWZ-03A-01R A12613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12613	SRX1077643	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASPWZ-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASPWZ-03A-01R A12613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3375-1./A12613.fastq	SRR2083143	@dbgap@:reads/SRP012000/SRS380269/SRX1077643/SRR2083143/SRR2083143.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASPWZ-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASREH-09A-02R.exon.quantification.txt	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASREH-09A-02R.gene.quantification.txt	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASREH-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASREH-09A-02R.fusion.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASREH-09A-02R.indel.vcf	3			
TARGET-20-PASREH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASREH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASREH-09A-02R	RNA	EFO	SRS380301		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASREH-09A-02R A12594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12594	SRX1077636	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASREH-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASREH-09A-02R A12594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3353-1./A12594.fastq	SRR2083141	@dbgap@:reads/SRP012000/SRS380301/SRX1077636/SRR2083141/SRR2083141.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASREH-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRRB-03A-01R.exon.quantification.txt	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRRB-03A-01R.gene.quantification.txt	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRRB-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASRRB-03A-01R.fusion.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASRRB-03A-01R.indel.vcf	3			
TARGET-20-PASRRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRRB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRRB-03A-01R	RNA	EFO	SRS380270		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRRB-03A-01R A12595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12595	SRX1077620	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRRB-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRRB-03A-01R A12595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12595.fastq	SRR2083162	@dbgap@:reads/SRP012000/SRS380270/SRX1077620/SRR2083162/SRR2083162.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASRRB-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRTP-09A-01R.exon.quantification.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRTP-09A-01R.gene.quantification.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASRTP-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASRTP-09A-01R.fusion.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASRTP-09A-01R.indel.vcf	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASRTP-09A-01R A12596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12596	SRX1077708	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASRTP-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASRTP-09A-01R A12596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3358-1./A12596.fastq	SRR2083142	@dbgap@:reads/SRP012000/SRS380337/SRX1077708/SRR2083142/SRR2083142.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASRTP-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_790790.gene.quantification.txt	3			
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790790_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_790790_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790790_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_790790_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790790_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_790790_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790790_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01R	RNA	EFO	SRS380337	AML_790790	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASRTP-09A-01R 1170-SL-0027 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0027	SRX1182081		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASRTP-09A-01R 1170-SL-0027 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASRTP-09A-01R.fastq	SRR2239714	@dbgap@:reads/SRP012000/SRS380337/SRX1182081/SRR2239714/SRR2239714.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_790790_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSSI-09A-02R.exon.quantification.txt	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSSI-09A-02R.gene.quantification.txt	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSSI-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASSSI-09A-02R.fusion.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASSSI-09A-02R.indel.vcf	3			
TARGET-20-PASSSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSSI-09A-02R	RNA	EFO	SRS380283		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSSI-09A-02R A12597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12597	SRX548892	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSSI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASSSI-09A-02R A12597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1871-1./A12597.fastq	SRR1810576	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1810576/SRR1810576.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_1_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294253	@dbgap@:reads/SRP012000/SRS380283/SRX548892/SRR1294253/SRR1294253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASSSI-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSWG-03A-01R.exon.quantification.txt	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSWG-03A-01R.gene.quantification.txt	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASSWG-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASSWG-03A-01R.fusion.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASSWG-03A-01R.indel.vcf	3			
TARGET-20-PASSWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASSWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASSWG-03A-01R	RNA	EFO	SRS380294		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASSWG-03A-01R A12617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12617	SRX1077655	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASSWG-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASSWG-03A-01R A12617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3379-1./A12617.fastq	SRR2083118	@dbgap@:reads/SRP012000/SRS380294/SRX1077655/SRR2083118/SRR2083118.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASSWG-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASTFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTFY-09A-01R	RNA	EFO	SRS1054309		hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASTFY-09A-01R 1170-SL-0057 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0057	SRX1182082		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASTFY-09A-01R 1170-SL-0057 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASTFY-09A-01R.fastq	SRR2239715	@dbgap@:reads/SRP012000/SRS1054309/SRX1182082/SRR2239715/SRR2239715.sra	1														
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTPU-09A-01R.exon.quantification.txt	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTPU-09A-01R.gene.quantification.txt	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTPU-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTPU-09A-01R.fusion.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTPU-09A-01R.indel.vcf	3			
TARGET-20-PASTPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTPU-09A-01R	RNA	EFO	SRS380366		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTPU-09A-01R A12633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12633	SRX1077618	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTPU-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASTPU-09A-01R A12633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3371-1./A12633.fastq	SRR2083199	@dbgap@:reads/SRP012000/SRS380366/SRX1077618/SRR2083199/SRR2083199.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASTPU-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTTW-09A-01R.exon.quantification.txt	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTTW-09A-01R.gene.quantification.txt	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTTW-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTTW-09A-01R.fusion.vcf	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTTW-09A-01R.indel.vcf	3			
TARGET-20-PASTTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTTW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTTW-09A-01R	RNA	EFO	SRS605555		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTTW-09A-01R A31993 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31993	SRX542514	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTTW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASTTW-09A-01R A31993 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1996-1./A31993.fastq	SRR1791172	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1791172/SRR1791172.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1286864	@dbgap@:reads/SRP012000/SRS605555/SRX542514/SRR1286864/SRR1286864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASTTW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-03A-01R.exon.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-03A-01R.gene.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-03A-01R.isoform.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTUH-03A-01R.fusion.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTUH-03A-01R.indel.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-03A-01R	RNA	EFO	SRS605617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-03A-01R A31936 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31936	SRX542530	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-22	TARGET-20-PASTUH-03A-01R A31936 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1999-1./A31936.fastq	SRR1796911	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1796911/SRR1796911.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 2)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2MRVACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286886	@dbgap@:reads/SRP012000/SRS605617/SRX542530/SRR1286886/SRR1286886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASTUH-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-04A-01R.exon.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-04A-01R.gene.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASTUH-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTUH-04A-01R.fusion.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASTUH-04A-01R.indel.vcf	3			
TARGET-20-PASTUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASTUH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASTUH-04A-01R	RNA	EFO	SRS605640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASTUH-04A-01R A32013 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32013	SRX543474	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASTUH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASTUH-04A-01R A32013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32013.fastq	SRR1796857	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1796857/SRR1796857.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288105	@dbgap@:reads/SRP012000/SRS605640/SRX543474/SRR1288105/SRR1288105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASTUH-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASUHK-09A-01R.exon.quantification.txt	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASUHK-09A-01R.gene.quantification.txt	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASUHK-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASUHK-09A-01R.fusion.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASUHK-09A-01R.indel.vcf	3			
TARGET-20-PASUHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASUHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASUHK-09A-01R	RNA	EFO	SRS380416		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASUHK-09A-01R A12631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12631	SRX1077657	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASUHK-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASUHK-09A-01R A12631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12631.fastq	SRR2083201	@dbgap@:reads/SRP012000/SRS380416/SRX1077657/SRR2083201/SRR2083201.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASUHK-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-04A-01R.exon.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-04A-01R.gene.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVVS-04A-01R.fusion.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVVS-04A-01R.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-04A-01R	RNA	EFO	SRS605594		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-04A-01R A32035 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32035	SRX543491	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASVVS-04A-01R A32035 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1975-1..1/A32035.fastq	SRR1796905	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1796905/SRR1796905.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2PJTACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288110	@dbgap@:reads/SRP012000/SRS605594/SRX543491/SRR1288110/SRR1288110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASVVS-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-09A-03R.exon.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-09A-03R.gene.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVVS-09A-03R.isoform.quantification.txt	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVVS-09A-03R.fusion.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVVS-09A-03R.indel.vcf	3			
TARGET-20-PASVVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVVS-09A-03R	RNA	EFO	SRS605560		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVVS-09A-03R A31920 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31920	SRX542506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVVS-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVVS-09A-03R A31920 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1997-1./A31920.fastq	SRR1796906	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1796906/SRR1796906.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286846	@dbgap@:reads/SRP012000/SRS605560/SRX542506/SRR1286846/SRR1286846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASVVS-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-04A-01R.exon.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-04A-01R.gene.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYA-04A-01R.fusion.vcf	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYA-04A-01R.indel.vcf	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-04A-01R	RNA	EFO	SRS605842		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-04A-01R A32028 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32028	SRX543506	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASVYA-04A-01R A32028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1968-1./A32028.fastq	SRR1796858	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1796858/SRR1796858.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_1_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288107	@dbgap@:reads/SRP012000/SRS605842/SRX543506/SRR1288107/SRR1288107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASVYA-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-09A-01R.exon.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-09A-01R.gene.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYA-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYA-09A-01R.fusion.vcf	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYA-09A-01R.indel.vcf	3			
TARGET-20-PASVYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYA-09A-01R	RNA	EFO	SRS380288		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYA-09A-01R A12649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12649	SRX548902	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASVYA-09A-01R A12649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12649.fastq	SRR1810590	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1810590/SRR1810590.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294229	@dbgap@:reads/SRP012000/SRS380288/SRX548902/SRR1294229/SRR1294229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASVYA-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYL-09A-01R.exon.quantification.txt	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYL-09A-01R.gene.quantification.txt	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASVYL-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYL-09A-01R.fusion.vcf	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASVYL-09A-01R.indel.vcf	3			
TARGET-20-PASVYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASVYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASVYL-09A-01R	RNA	EFO	SRS380328		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASVYL-09A-01R A12636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	214	A12636	SRX548870	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASVYL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PASVYL-09A-01R A12636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1867-1..1/A12636.fastq	SRR1810644	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1810644/SRR1810644.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_1_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294233	@dbgap@:reads/SRP012000/SRS380328/SRX548870/SRR1294233/SRR1294233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASVYL-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-04A-02R.exon.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-04A-02R.gene.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAJ-04A-02R.fusion.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAJ-04A-02R.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-04A-02R	RNA	EFO	SRS605629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-04A-02R A32023 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32023	SRX543475	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PASWAJ-04A-02R A32023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1966-1./A32023.fastq	SRR1791127	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1791127/SRR1791127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_8_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288104	@dbgap@:reads/SRP012000/SRS605629/SRX543475/SRR1288104/SRR1288104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWAJ-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-09A-04R.exon.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-09A-04R.gene.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAJ-09A-04R.isoform.quantification.txt	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAJ-09A-04R.fusion.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAJ-09A-04R.indel.vcf	3			
TARGET-20-PASWAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAJ-09A-04R	RNA	EFO	SRS380443		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAJ-09A-04R A12602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12602	SRX548911	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAJ-09A-04R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWAJ-09A-04R A12602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12602.fastq	SRR1810607	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1810607/SRR1810607.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294251	@dbgap@:reads/SRP012000/SRS380443/SRX548911/SRR1294251/SRR1294251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWAJ-09A-04R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-01R.exon.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-01R.gene.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAT-09A-01R.fusion.vcf	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAT-09A-01R.indel.vcf	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-01R	RNA	EFO	SRS380388		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-01R A12655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12655	SRX548899	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWAT-09A-01R A12655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1876-1./A12655.fastq	SRR1810609	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1810609/SRR1810609.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_6_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294296	@dbgap@:reads/SRP012000/SRS380388/SRX548899/SRR1294296/SRR1294296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWAT-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-02R.exon.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-02R.gene.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWAT-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAT-09A-02R.fusion.vcf	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWAT-09A-02R.indel.vcf	3			
TARGET-20-PASWAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWAT-09A-02R	RNA	EFO	SRS380399		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWAT-09A-02R A12665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12665	SRX1077700	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWAT-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASWAT-09A-02R A12665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3362-1./A12665.fastq	SRR2083148	@dbgap@:reads/SRP012000/SRS380399/SRX1077700/SRR2083148/SRR2083148.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWAT-09A-02R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWLN-09A-01R.exon.quantification.txt	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWLN-09A-01R.gene.quantification.txt	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWLN-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWLN-09A-01R.fusion.vcf	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWLN-09A-01R.indel.vcf	3			
TARGET-20-PASWLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWLN-09A-01R	RNA	EFO	SRS380432		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWLN-09A-01R A12658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12658	SRX548921	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWLN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASWLN-09A-01R A12658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1894-1./A12658.fastq	SRR1810634	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1810634/SRR1810634.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F8BACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1294293	@dbgap@:reads/SRP012000/SRS380432/SRX548921/SRR1294293/SRR1294293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWLN-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPD-09A-02R.exon.quantification.txt	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPD-09A-02R.gene.quantification.txt	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPD-09A-02R.isoform.quantification.txt	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWPD-09A-02R.fusion.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWPD-09A-02R.indel.vcf	3			
TARGET-20-PASWPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPD-09A-02R	RNA	EFO	SRS605556		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPD-09A-02R A31976 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31976	SRX542495	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPD-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASWPD-09A-02R A31976 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2022-1./A31976.fastq	SRR1796874	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1796874/SRR1796874.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31976_1_lane_dupsFlagged.bam	SRR1286880	@dbgap@:reads/SRP012000/SRS605556/SRX542495/SRR1286880/SRR1286880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWPD-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPT-09A-01R.exon.quantification.txt	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPT-09A-01R.gene.quantification.txt	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWPT-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWPT-09A-01R.fusion.vcf	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWPT-09A-01R.indel.vcf	3			
TARGET-20-PASWPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWPT-09A-01R	RNA	EFO	SRS380284		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWPT-09A-01R A12644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12644	SRX548896	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWPT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASWPT-09A-01R A12644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12644.fastq	SRR1810586	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1810586/SRR1810586.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294246	@dbgap@:reads/SRP012000/SRS380284/SRX548896/SRR1294246/SRR1294246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWPT-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWTY-09A-01R.exon.quantification.txt	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWTY-09A-01R.gene.quantification.txt	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASWTY-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWTY-09A-01R.fusion.vcf	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASWTY-09A-01R.indel.vcf	3			
TARGET-20-PASWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASWTY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASWTY-09A-01R	RNA	EFO	SRS380349		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASWTY-09A-01R A12652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12652	SRX1077679	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASWTY-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PASWTY-09A-01R A12652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3369-1./A12652.fastq	SRR2083152	@dbgap@:reads/SRP012000/SRS380349/SRX1077679/SRR2083152/SRR2083152.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASWTY-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXNR-04A-01R.exon.quantification.txt	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXNR-04A-01R.gene.quantification.txt	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXNR-04A-01R.isoform.quantification.txt	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXNR-04A-01R.fusion.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXNR-04A-01R.indel.vcf	3			
TARGET-20-PASXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXNR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXNR-04A-01R	RNA	EFO	SRS605601		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXNR-04A-01R A32000 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32000	SRX542508	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXNR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-23	TARGET-20-PASXNR-04A-01R A32000 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2007-1./A32000.fastq	SRR1791152	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1791152/SRR1791152.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32000_1_lane_dupsFlagged.bam	SRR1286913	@dbgap@:reads/SRP012000/SRS605601/SRX542508/SRR1286913/SRR1286913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASXNR-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXVC-09A-01R.exon.quantification.txt	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXVC-09A-01R.gene.quantification.txt	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXVC-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXVC-09A-01R.fusion.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXVC-09A-01R.indel.vcf	3			
TARGET-20-PASXVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXVC-09A-01R	RNA	EFO	SRS380287		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXVC-09A-01R A12647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12647	SRX1077664	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXVC-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PASXVC-09A-01R A12647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3359-1./A12647.fastq	SRR2083196	@dbgap@:reads/SRP012000/SRS380287/SRX1077664/SRR2083196/SRR2083196.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASXVC-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_794421.gene.quantification.txt	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794421_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794421_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794421_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794421_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794421_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794421_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794421_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-01R	RNA	EFO	SRS1054308	AML_794421	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASXYG-09A-01R 1170-SL-0062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0062	SRX1182083		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASXYG-09A-01R 1170-SL-0062 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASXYG-09A-01R.fastq	SRR2239716	@dbgap@:reads/SRP012000/SRS1054308/SRX1182083/SRR2239716/SRR2239716.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794421_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXYG-09A-05R.exon.quantification.txt	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXYG-09A-05R.gene.quantification.txt	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASXYG-09A-05R.isoform.quantification.txt	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXYG-09A-05R.fusion.vcf	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASXYG-09A-05R.indel.vcf	3			
TARGET-20-PASXYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASXYG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASXYG-09A-05R	RNA	EFO	SRS605656		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASXYG-09A-05R A31965 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31965	SRX542471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASXYG-09A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-25	TARGET-20-PASXYG-09A-05R A31965 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2025-1./A31965.fastq	SRR1796885	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1796885/SRR1796885.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A31965_1_lane_dupsFlagged.bam	SRR1286871	@dbgap@:reads/SRP012000/SRS605656/SRX542471/SRR1286871/SRR1286871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASXYG-09A-05R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_794537.gene.quantification.txt	3			
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794537_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794537_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794537_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794537_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794537_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794537_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794537_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYDC-09A-01R	RNA	EFO	SRS1054307	AML_794537	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYDC-09A-01R 1170-SL-0049 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0049	SRX1182084		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYDC-09A-01R 1170-SL-0049 run	sequencing assay	EFO	100	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYDC-09A-01R.fastq	SRR2239717	@dbgap@:reads/SRP012000/SRS1054307/SRX1182084/SRR2239717/SRR2239717.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794537_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-04A-02R.exon.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-04A-02R.gene.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-04A-02R.isoform.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASYJI-04A-02R.fusion.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASYJI-04A-02R.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-04A-02R	RNA	EFO	SRS605850		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-04A-02R A32024 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32024	SRX543481	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-02	TARGET-20-PASYJI-04A-02R A32024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1974-1./A32024.fastq	SRR1796892	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1796892/SRR1796892.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2P54ACXX_7_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288126	@dbgap@:reads/SRP012000/SRS605850/SRX543481/SRR1288126/SRR1288126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASYJI-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_794690.gene.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794690_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_794690_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794690_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_794690_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794690_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_794690_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794690_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-01R	RNA	EFO	SRS1054361	AML_794690	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYJI-09A-01R 1170-SL-0045 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0045	SRX1182085		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYJI-09A-01R 1170-SL-0045 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYJI-09A-01R.fastq	SRR2239718	@dbgap@:reads/SRP012000/SRS1054361/SRX1182085/SRR2239718/SRR2239718.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_794690_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-09A-03R.exon.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-09A-03R.gene.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASYJI-09A-03R.isoform.quantification.txt	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASYJI-09A-03R.fusion.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASYJI-09A-03R.indel.vcf	3			
TARGET-20-PASYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYJI-09A-03R	RNA	EFO	SRS380356		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASYJI-09A-03R A12598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12598	SRX548858	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASYJI-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PASYJI-09A-03R A12598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1881-1./A12598.fastq	SRR1810631	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1810631/SRR1810631.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_3_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294230	@dbgap@:reads/SRP012000/SRS380356/SRX548858/SRR1294230/SRR1294230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASYJI-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PASYRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASYRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASYRN-03A-01R	RNA	EFO	SRS1054360		hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PASYRN-03A-01R 1170-SL-0068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0068	SRX1182086		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PASYRN-03A-01R 1170-SL-0068 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PASYRN-03A-01R.fastq	SRR2239719	@dbgap@:reads/SRP012000/SRS1054360/SRX1182086/SRR2239719/SRR2239719.sra	1														
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASZLJ-09A-01R.exon.quantification.txt	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASZLJ-09A-01R.gene.quantification.txt	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PASZLJ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASZLJ-09A-01R.fusion.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PASZLJ-09A-01R.indel.vcf	3			
TARGET-20-PASZLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASZLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASZLJ-09A-01R	RNA	EFO	SRS380409		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PASZLJ-09A-01R A12640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12640	SRX548847	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PASZLJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PASZLJ-09A-01R A12640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1873-1./A12640.fastq	SRR1810601	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1810601/SRR1810601.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294218	@dbgap@:reads/SRP012000/SRS380409/SRX548847/SRR1294218/SRR1294218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PASZLJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATAST-09A-01R.exon.quantification.txt	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATAST-09A-01R.gene.quantification.txt	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATAST-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATAST-09A-01R.fusion.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATAST-09A-01R.indel.vcf	3			
TARGET-20-PATAST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATAST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATAST-09A-01R	RNA	EFO	SRS380413		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATAST-09A-01R A12626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12626	SRX548913	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATAST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATAST-09A-01R A12626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1865-1./A12626.fastq	SRR1810592	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1810592/SRR1810592.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 35%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_3_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294270	@dbgap@:reads/SRP012000/SRS380413/SRX548913/SRR1294270/SRR1294270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATAST-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATBFL-09A-01R.exon.quantification.txt	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATBFL-09A-01R.gene.quantification.txt	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATBFL-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATBFL-09A-01R.fusion.vcf	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATBFL-09A-01R.indel.vcf	3			
TARGET-20-PATBFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATBFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATBFL-09A-01R	RNA	EFO	SRS380420		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATBFL-09A-01R A12654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12654	SRX1077644	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATBFL-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-08	TARGET-20-PATBFL-09A-01R A12654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3374-1./A12654.fastq	SRR2083109	@dbgap@:reads/SRP012000/SRS380420/SRX1077644/SRR2083109/SRR2083109.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATBFL-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDHA-09A-01R.exon.quantification.txt	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDHA-09A-01R.gene.quantification.txt	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDHA-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDHA-09A-01R.fusion.vcf	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDHA-09A-01R.indel.vcf	3			
TARGET-20-PATDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDHA-09A-01R	RNA	EFO	SRS380303		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDHA-09A-01R A12643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12643	SRX548867	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-18	TARGET-20-PATDHA-09A-01R A12643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1886-1./A12643.fastq	SRR1810599	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1810599/SRR1810599.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F7PACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294222	@dbgap@:reads/SRP012000/SRS380303/SRX548867/SRR1294222/SRR1294222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATDHA-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-04A-02R.exon.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-04A-02R.gene.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-04A-02R.isoform.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDNN-04A-02R.fusion.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDNN-04A-02R.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-04A-02R	RNA	EFO	SRS605619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-04A-02R A32026 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32026	SRX543490	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-15	TARGET-20-PATDNN-04A-02R A32026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1977-1..2/A32026.fastq	SRR1796918	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1796918/SRR1796918.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage > 15%, genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BNACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288112	@dbgap@:reads/SRP012000/SRS605619/SRX543490/SRR1288112/SRR1288112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATDNN-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-09A-03R.exon.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-09A-03R.gene.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATDNN-09A-03R.isoform.quantification.txt	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDNN-09A-03R.fusion.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATDNN-09A-03R.indel.vcf	3			
TARGET-20-PATDNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATDNN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATDNN-09A-03R	RNA	EFO	SRS380448		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATDNN-09A-03R A12600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12600	SRX548856	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATDNN-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATDNN-09A-03R A12600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1875-1./A12600.fastq	SRR1810582	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1810582/SRR1810582.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2F5JACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1294248	@dbgap@:reads/SRP012000/SRS380448/SRX548856/SRR1294248/SRR1294248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATDNN-09A-03R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Expression:01		AML_798231.gene.quantification.txt	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_798231_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-DeFuse:01		AML_798231_results_filtered.tsv	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_798231_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-FusionMap:01		AML_798231_FusionReport.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_798231_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		AML_798231_fusion_summary.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_interpreted.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		final_fusion_report_rna.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		fusion_protein_results.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-SnowShoes:01		mapping_good_for_primer_sequence_design.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_798231_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_breakpoint_seq.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-01R	RNA	EFO	SRS1054359	AML_798231	hudsonalpha.org:Protocol:mRNAseq-LibraryPrep-Illumina-Unstranded:01	Hudson Alpha Institute of Biotechnology	TARGET-20-PATELT-03A-01R 1170-SL-0058 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	1170-SL-0058	SRX1182087		hudsonalpha.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	HAIB		TARGET-20-PATELT-03A-01R 1170-SL-0058 run	sequencing assay	EFO	102	hudsonalpha.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-20-PATELT-03A-01R.fastq	SRR2239720	@dbgap@:reads/SRP012000/SRS1054359/SRX1182087/SRR2239720/SRR2239720.sra	1								nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-TopHat:01		AML_798231_potential_fusion.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:mRNAseq-Fusion-Summary:01	fusion_report.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATELT-03A-05R.exon.quantification.txt	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATELT-03A-05R.gene.quantification.txt	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATELT-03A-05R.isoform.quantification.txt	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATELT-03A-05R.fusion.vcf	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATELT-03A-05R.indel.vcf	3			
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-03A-05R	RNA	EFO	SRS605621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATELT-03A-05R A31955 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A31955	SRX542461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATELT-03A-05R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATELT-03A-05R A31955 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1994-1./A31955.fastq	SRR1796866	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1796866/SRR1796866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NC1ACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1286837	@dbgap@:reads/SRP012000/SRS605621/SRX542461/SRR1286837/SRR1286837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATELT-03A-05R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATFDF-09A-01R.exon.quantification.txt	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATFDF-09A-01R.gene.quantification.txt	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATFDF-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATFDF-09A-01R.fusion.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATFDF-09A-01R.indel.vcf	3			
TARGET-20-PATFDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATFDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATFDF-09A-01R	RNA	EFO	SRS380327		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATFDF-09A-01R A12620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12620	SRX1077672	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATFDF-09A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATFDF-09A-01R A12620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3356-1./A12620.fastq	SRR2083113	@dbgap@:reads/SRP012000/SRS380327/SRX1077672/SRR2083113/SRR2083113.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATFDF-09A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATGAN-03A-01R.exon.quantification.txt	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATGAN-03A-01R.gene.quantification.txt	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATGAN-03A-01R.isoform.quantification.txt	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATGAN-03A-01R.fusion.vcf	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATGAN-03A-01R.indel.vcf	3			
TARGET-20-PATGAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATGAN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATGAN-03A-01R	RNA	EFO	SRS380385		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATGAN-03A-01R A12646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A12646	SRX1077705	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATGAN-03A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-01	TARGET-20-PATGAN-03A-01R A12646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3357-1./A12646.fastq	SRR2083140	@dbgap@:reads/SRP012000/SRS380385/SRX1077705/SRR2083140/SRR2083140.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATGAN-03A-01R.format_1.3.rna_tumor.maf.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-04A-01R.exon.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-04A-01R.gene.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-04A-01R.isoform.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATIAK-04A-01R.fusion.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATIAK-04A-01R.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-04A-01R	RNA	EFO	SRS605628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-04A-01R A32029 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32029	SRX543505	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-10-09	TARGET-20-PATIAK-04A-01R A32029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1976-1./A32029.fastq	SRR1796904	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1796904/SRR1796904.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2NR9ACXX_2_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288090	@dbgap@:reads/SRP012000/SRS605628/SRX543505/SRR1288090/SRR1288090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATIAK-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-09A-01R.exon.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-09A-01R.gene.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATIAK-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATIAK-09A-01R.fusion.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATIAK-09A-01R.indel.vcf	3			
TARGET-20-PATIAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATIAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATIAK-09A-01R	RNA	EFO	SRS380417		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATIAK-09A-01R A12622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12622	SRX548851	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATIAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATIAK-09A-01R A12622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1863-1./A12622.fastq	SRR1810629	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1810629/SRR1810629.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_1_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1294245	@dbgap@:reads/SRP012000/SRS380417/SRX548851/SRR1294245/SRR1294245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATIAK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-09A-01R.exon.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-09A-01R.gene.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-09A-01R.isoform.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATJHJ-09A-01R.fusion.vcf	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATJHJ-09A-01R.indel.vcf	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-09A-01R	RNA	EFO	SRS380318		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-09A-01R A12641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A12641	SRX548904	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-17	TARGET-20-PATJHJ-09A-01R A12641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1868-1./A12641.fastq	SRR1810639	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1810639/SRR1810639.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EJBACXX_6_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1294280	@dbgap@:reads/SRP012000/SRS380318/SRX548904/SRR1294280/SRR1294280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATJHJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-40A-01R.exon.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-40A-01R.gene.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-20-PATJHJ-40A-01R.isoform.quantification.txt	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATJHJ-40A-01R.fusion.vcf	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-20-PATJHJ-40A-01R.indel.vcf	3			
TARGET-20-PATJHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATJHJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATJHJ-40A-01R	RNA	EFO	SRS605624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-20-PATJHJ-40A-01R A32030 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A32030	SRX543486	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-20-PATJHJ-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-19	TARGET-20-PATJHJ-40A-01R A32030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX1965-1./A32030.fastq	SRR1791164	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1791164/SRR1791164.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2EYAACXX_7_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288098	@dbgap@:reads/SRP012000/SRS605624/SRX543486/SRR1288098/SRR1288098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-20-PATJHJ-40A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.exon.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.gene.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.isoform.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMXZY-09A-03R.fusion.vcf	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMXZY-09A-03R.indel.vcf	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24346.fastq	SRR1798952	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798952/SRR1798952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PAMXZY-09A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.exon.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.gene.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMXZY-09A-03R.isoform.quantification.txt	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMXZY-09A-03R.fusion.vcf	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMXZY-09A-03R.indel.vcf	3			
TARGET-21-PAMXZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMXZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMXZY-09A-03R	RNA	EFO	SRS552651		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMXZY-09A-03R A24346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24346	SRX467467	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMXZY-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMXZY-09A-03R A24346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24346.fastq	SRR1798966	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1798966/SRR1798966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24346_2_lanes_dupsFlagged_mdfixed.bam	SRR1165029	@dbgap@:reads/SRP012000/SRS552651/SRX467467/SRR1165029/SRR1165029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PAMXZY-09A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PAMXZY-09A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-09A-02R.exon.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-09A-02R.gene.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-09A-02R.isoform.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-09A-02R.fusion.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-09A-02R.indel.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-09A-02R	RNA	EFO	SRS552644		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-09A-02R A24347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24347	SRX467432	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-09A-02R A24347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24347.fastq	SRR1798973	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1798973/SRR1798973.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_TGACCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165022	@dbgap@:reads/SRP012000/SRS552644/SRX467432/SRR1165022/SRR1165022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PAMYMA-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PAMYMA-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.exon.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.gene.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.isoform.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-41A-01R.fusion.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-41A-01R.indel.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24364.fastq	SRR1798964	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1798964/SRR1798964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PAMYMA-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.exon.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.gene.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PAMYMA-41A-01R.isoform.quantification.txt	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-41A-01R.fusion.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PAMYMA-41A-01R.indel.vcf	3			
TARGET-21-PAMYMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PAMYMA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PAMYMA-41A-01R	RNA	EFO	SRS552610		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PAMYMA-41A-01R A24364 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24364	SRX467421	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PAMYMA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PAMYMA-41A-01R A24364 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24364.fastq	SRR1799027	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1799027/SRR1799027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24364_2_lanes_dupsFlagged_mdfixed.bam	SRR1165001	@dbgap@:reads/SRP012000/SRS552610/SRX467421/SRR1165001/SRR1165001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PAMYMA-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PAMYMA-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANVPB-09A-02R.exon.quantification.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANVPB-09A-02R.gene.quantification.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANVPB-09A-02R.isoform.quantification.txt	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANVPB-09A-02R.fusion.vcf	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANVPB-09A-02R.indel.vcf	3			
TARGET-21-PANVPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANVPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANVPB-09A-02R	RNA	EFO	SRS552611		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANVPB-09A-02R A24350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24350	SRX467464	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANVPB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PANVPB-09A-02R A24350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24350.fastq	SRR1798989	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1798989/SRR1798989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165008	@dbgap@:reads/SRP012000/SRS552611/SRX467464/SRR1165008/SRR1165008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PANVPB-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PANVPB-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-09A-03R.exon.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-09A-03R.gene.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-09A-03R.isoform.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-09A-03R.fusion.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-09A-03R.indel.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-09A-03R	RNA	EFO	SRS552628		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-09A-03R A24348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24348	SRX467438	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-09A-03R A24348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24348.fastq	SRR1799020	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1799020/SRR1799020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164992	@dbgap@:reads/SRP012000/SRS552628/SRX467438/SRR1164992/SRR1164992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PANZLR-09A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PANZLR-09A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.exon.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.gene.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.isoform.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-41A-02R.fusion.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-41A-02R.indel.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24349.fastq	SRR1798994	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1798994/SRR1798994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PANZLR-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PANZLR-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.exon.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.gene.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PANZLR-41A-02R.isoform.quantification.txt	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-41A-02R.fusion.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PANZLR-41A-02R.indel.vcf	3			
TARGET-21-PANZLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PANZLR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PANZLR-41A-02R	RNA	EFO	SRS552642		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PANZLR-41A-02R A24349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24349	SRX467455	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PANZLR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PANZLR-41A-02R A24349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24349.fastq	SRR1799012	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1799012/SRR1799012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24349_2_lanes_dupsFlagged_mdfixed.bam	SRR1165033	@dbgap@:reads/SRP012000/SRS552642/SRX467455/SRR1165033/SRR1165033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PANZLR-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PANZLR-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.exon.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.gene.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.isoform.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-09A-03R.fusion.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-09A-03R.indel.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24336.fastq	SRR1798968	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1798968/SRR1798968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARBTV-09A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARBTV-09A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.exon.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.gene.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-09A-03R.isoform.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-09A-03R.fusion.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-09A-03R.indel.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-09A-03R	RNA	EFO	SRS552633		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-09A-03R A24336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24336	SRX467451	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-09A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARBTV-09A-03R A24336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24336.fastq	SRR1799018	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1799018/SRR1799018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24336_2_lanes_dupsFlagged_mdfixed.bam	SRR1165017	@dbgap@:reads/SRP012000/SRS552633/SRX467451/SRR1165017/SRR1165017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARBTV-09A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARBTV-09A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.exon.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.gene.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-41A-02R.fusion.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-41A-02R.indel.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24337.fastq	SRR1798970	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798970/SRR1798970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARBTV-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARBTV-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.exon.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.gene.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARBTV-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-41A-02R.fusion.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARBTV-41A-02R.indel.vcf	3			
TARGET-21-PARBTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARBTV-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARBTV-41A-02R	RNA	EFO	SRS552620		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARBTV-41A-02R A24337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24337	SRX472279	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARBTV-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARBTV-41A-02R A24337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24337.fastq	SRR1798987	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1798987/SRR1798987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24337_2_lanes_dupsFlagged_mdfixed.bam	SRR1171163	@dbgap@:reads/SRP012000/SRS552620/SRX472279/SRR1171163/SRR1171163.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARBTV-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARBTV-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.exon.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.gene.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.isoform.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARHRS-09A-02R.fusion.vcf	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARHRS-09A-02R.indel.vcf	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24323.fastq	SRR1798972	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798972/SRR1798972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARHRS-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARHRS-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.exon.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.gene.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARHRS-09A-02R.isoform.quantification.txt	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARHRS-09A-02R.fusion.vcf	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARHRS-09A-02R.indel.vcf	3			
TARGET-21-PARHRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARHRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARHRS-09A-02R	RNA	EFO	SRS552652		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARHRS-09A-02R A24323 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24323	SRX467433	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARHRS-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARHRS-09A-02R A24323 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24323.fastq	SRR1798982	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1798982/SRR1798982.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24323_2_lanes_dupsFlagged_mdfixed.bam	SRR1165036	@dbgap@:reads/SRP012000/SRS552652/SRX467433/SRR1165036/SRR1165036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARHRS-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARHRS-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.exon.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.gene.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.isoform.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-09A-02R.fusion.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-09A-02R.indel.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1./A24332.fastq	SRR1798975	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1798975/SRR1798975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARLSL-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARLSL-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.exon.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.gene.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-09A-02R.isoform.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-09A-02R.fusion.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-09A-02R.indel.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-09A-02R	RNA	EFO	SRS552626		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-09A-02R A24332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24332	SRX467427	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-09A-02R A24332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1333-1..1/A24332.fastq	SRR1799010	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1799010/SRR1799010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24332_2_lanes_dupsFlagged_mdfixed.bam	SRR1164990	@dbgap@:reads/SRP012000/SRS552626/SRX467427/SRR1164990/SRR1164990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARLSL-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARLSL-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.exon.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.gene.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-41A-02R.fusion.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-41A-02R.indel.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24333.fastq	SRR1799006	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799006/SRR1799006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARLSL-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARLSL-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.exon.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.gene.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARLSL-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-41A-02R.fusion.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARLSL-41A-02R.indel.vcf	3			
TARGET-21-PARLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARLSL-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARLSL-41A-02R	RNA	EFO	SRS552606		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARLSL-41A-02R A24333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24333	SRX467460	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARLSL-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARLSL-41A-02R A24333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24333.fastq	SRR1799017	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1799017/SRR1799017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24333_2_lanes_dupsFlagged_mdfixed.bam	SRR1165015	@dbgap@:reads/SRP012000/SRS552606/SRX467460/SRR1165015/SRR1165015.sra	2	GRCh37_lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARLSL-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARLSL-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.exon.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.gene.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.isoform.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-09A-01R.fusion.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-09A-01R.indel.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24330.fastq	SRR1798957	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798957/SRR1798957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARNAW-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARNAW-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.exon.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.gene.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-09A-01R.isoform.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-09A-01R.fusion.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-09A-01R.indel.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-09A-01R	RNA	EFO	SRS552612		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-09A-01R A24330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24330	SRX467470	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARNAW-09A-01R A24330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24330.fastq	SRR1798978	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1798978/SRR1798978.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24330_2_lanes_dupsFlagged_mdfixed.bam	SRR1165024	@dbgap@:reads/SRP012000/SRS552612/SRX467470/SRR1165024/SRR1165024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARNAW-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARNAW-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.exon.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.gene.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.isoform.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-41A-01R.fusion.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-41A-01R.indel.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24331.fastq	SRR1798967	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1798967/SRR1798967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARNAW-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARNAW-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.exon.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.gene.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARNAW-41A-01R.isoform.quantification.txt	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-41A-01R.fusion.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARNAW-41A-01R.indel.vcf	3			
TARGET-21-PARNAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARNAW-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARNAW-41A-01R	RNA	EFO	SRS552624		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARNAW-41A-01R A24331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24331	SRX467443	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARNAW-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARNAW-41A-01R A24331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24331.fastq	SRR1799015	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1799015/SRR1799015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24331_2_lanes_dupsFlagged_mdfixed.bam	SRR1165007	@dbgap@:reads/SRP012000/SRS552624/SRX467443/SRR1165007/SRR1165007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARNAW-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARNAW-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-03A-03R.exon.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-03A-03R.gene.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-03A-03R.isoform.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-03A-03R.fusion.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-03A-03R.indel.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-03A-03R	RNA	EFO	SRS555087		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-03A-03R A24342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24342	SRX467446	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-03A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARXYR-03A-03R A24342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1340-1./A24342.fastq	SRR1799019	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1799019/SRR1799019.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_7_CTCAGA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165021	@dbgap@:reads/SRP012000/SRS555087/SRX467446/SRR1165021/SRR1165021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARXYR-03A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARXYR-03A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.exon.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.gene.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-41A-02R.fusion.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-41A-02R.indel.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24343.fastq	SRR1798991	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1798991/SRR1798991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARXYR-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARXYR-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.exon.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.gene.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARXYR-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-41A-02R.fusion.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARXYR-41A-02R.indel.vcf	3			
TARGET-21-PARXYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARXYR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARXYR-41A-02R	RNA	EFO	SRS552605		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARXYR-41A-02R A24343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24343	SRX467444	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARXYR-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARXYR-41A-02R A24343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24343.fastq	SRR1799030	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1799030/SRR1799030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24343_2_lanes_dupsFlagged_mdfixed.bam	SRR1165026	@dbgap@:reads/SRP012000/SRS552605/SRX467444/SRR1165026/SRR1165026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARXYR-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARXYR-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.exon.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.gene.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.isoform.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-09A-01R.fusion.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-09A-01R.indel.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24313.fastq	SRR1799002	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799002/SRR1799002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARZIA-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARZIA-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.exon.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.gene.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-09A-01R.isoform.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-09A-01R.fusion.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-09A-01R.indel.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-09A-01R	RNA	EFO	SRS552647		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-09A-01R A24313 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24313	SRX467457	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-09A-01R A24313 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24313.fastq	SRR1799029	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1799029/SRR1799029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24313_2_lanes_dupsFlagged_mdfixed.bam	SRR1165031	@dbgap@:reads/SRP012000/SRS552647/SRX467457/SRR1165031/SRR1165031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARZIA-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARZIA-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.exon.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.gene.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-41A-02R.fusion.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-41A-02R.indel.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1..1/A24314.fastq	SRR1798954	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798954/SRR1798954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARZIA-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARZIA-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.exon.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.gene.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PARZIA-41A-02R.isoform.quantification.txt	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-41A-02R.fusion.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PARZIA-41A-02R.indel.vcf	3			
TARGET-21-PARZIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PARZIA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PARZIA-41A-02R	RNA	EFO	SRS552639		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PARZIA-41A-02R A24314 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24314	SRX467439	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PARZIA-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PARZIA-41A-02R A24314 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1337-1./A24314.fastq	SRR1798962	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1798962/SRR1798962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24314_2_lanes_dupsFlagged_mdfixed.bam	SRR1165012	@dbgap@:reads/SRP012000/SRS552639/SRX467439/SRR1165012/SRR1165012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PARZIA-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PARZIA-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.exon.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.gene.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.isoform.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-03A-02R.fusion.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-03A-02R.indel.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1..1/A24355.fastq	SRR1798963	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1798963/SRR1798963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDKZ-03A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.exon.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.gene.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-03A-02R.isoform.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-03A-02R.fusion.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-03A-02R.indel.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-03A-02R	RNA	EFO	SRS552621		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-03A-02R A24355 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24355	SRX467422	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDKZ-03A-02R A24355 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1342-1./A24355.fastq	SRR1799022	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1799022/SRR1799022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24355_2_lanes_dupsFlagged_mdfixed.bam	SRR1165037	@dbgap@:reads/SRP012000/SRS552621/SRX467422/SRR1165037/SRR1165037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDKZ-03A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDKZ-03A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-41A-03R.exon.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-41A-03R.gene.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDKZ-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-41A-03R.fusion.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDKZ-41A-03R.indel.vcf	3			
TARGET-21-PASDKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDKZ-41A-03R	RNA	EFO	SRS552618		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDKZ-41A-03R A24356 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24356	SRX467453	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDKZ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASDKZ-41A-03R A24356 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24356.fastq	SRR1799009	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1799009/SRR1799009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_TCATTC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164994	@dbgap@:reads/SRP012000/SRS552618/SRX467453/SRR1164994/SRR1164994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDKZ-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDKZ-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.exon.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.gene.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.isoform.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-09A-02R.fusion.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-09A-02R.indel.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1..1/A24357.fastq	SRR1798953	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1798953/SRR1798953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDXR-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDXR-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.exon.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.gene.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-09A-02R.isoform.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-09A-02R.fusion.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-09A-02R.indel.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-09A-02R	RNA	EFO	SRS552674		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-09A-02R A24357 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24357	SRX467459	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASDXR-09A-02R A24357 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1341-1./A24357.fastq	SRR1799001	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1799001/SRR1799001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24357_2_lanes_dupsFlagged_mdfixed.bam	SRR1165003	@dbgap@:reads/SRP012000/SRS552674/SRX467459/SRR1165003/SRR1165003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDXR-09A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDXR-09A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.exon.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.gene.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-41A-03R.fusion.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-41A-03R.indel.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1..1/A24358.fastq	SRR1798980	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1798980/SRR1798980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDXR-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDXR-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.exon.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.gene.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASDXR-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-41A-03R.fusion.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASDXR-41A-03R.indel.vcf	3			
TARGET-21-PASDXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASDXR-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASDXR-41A-03R	RNA	EFO	SRS552645		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASDXR-41A-03R A24358 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24358	SRX467430	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASDXR-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASDXR-41A-03R A24358 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1347-1./A24358.fastq	SRR1799005	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1799005/SRR1799005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24358_2_lanes_dupsFlagged_mdfixed.bam	SRR1165034	@dbgap@:reads/SRP012000/SRS552645/SRX467430/SRR1165034/SRR1165034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASDXR-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASDXR-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.exon.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.gene.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-09A-01R.fusion.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-09A-01R.indel.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24321.fastq	SRR1799008	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799008/SRR1799008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFHK-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFHK-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.exon.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.gene.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-09A-01R.fusion.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-09A-01R.indel.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-09A-01R	RNA	EFO	SRS552646		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-09A-01R A24321 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24321	SRX467471	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-09A-01R A24321 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24321.fastq	SRR1799024	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1799024/SRR1799024.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24321_2_lanes_dupsFlagged_mdfixed.bam	SRR1165005	@dbgap@:reads/SRP012000/SRS552646/SRX467471/SRR1165005/SRR1165005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFHK-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFHK-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-41A-01R.exon.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-41A-01R.gene.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFHK-41A-01R.isoform.quantification.txt	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-41A-01R.fusion.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFHK-41A-01R.indel.vcf	3			
TARGET-21-PASFHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFHK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFHK-41A-01R	RNA	EFO	SRS552622		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFHK-41A-01R A24322 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24322	SRX467465	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFHK-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASFHK-41A-01R A24322 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24322.fastq	SRR1798985	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1798985/SRR1798985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_AGTTCC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164995	@dbgap@:reads/SRP012000/SRS552622/SRX467465/SRR1164995/SRR1164995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFHK-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFHK-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-09A-01R.exon.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-09A-01R.gene.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFJJ-09A-01R.fusion.vcf	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFJJ-09A-01R.indel.vcf	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-09A-01R	RNA	EFO	SRS552625		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-09A-01R A24353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24353	SRX467428	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-09A-01R A24353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24353.fastq	SRR1798981	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1798981/SRR1798981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_GAGTGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165013	@dbgap@:reads/SRP012000/SRS552625/SRX467428/SRR1165013/SRR1165013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFJJ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFJJ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-41A-01R.exon.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-41A-01R.gene.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFJJ-41A-01R.isoform.quantification.txt	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFJJ-41A-01R.fusion.vcf	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFJJ-41A-01R.indel.vcf	3			
TARGET-21-PASFJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFJJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFJJ-41A-01R	RNA	EFO	SRS552617		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFJJ-41A-01R A24354 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24354	SRX467461	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFJJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASFJJ-41A-01R A24354 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24354.fastq	SRR1798955	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1798955/SRR1798955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CTGCTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165004	@dbgap@:reads/SRP012000/SRS552617/SRX467461/SRR1165004/SRR1165004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFJJ-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFJJ-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFLG-41A-03R.exon.quantification.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFLG-41A-03R.gene.quantification.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASFLG-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFLG-41A-03R.fusion.vcf	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASFLG-41A-03R.indel.vcf	3			
TARGET-21-PASFLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASFLG-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASFLG-41A-03R	RNA	EFO	SRS555085		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASFLG-41A-03R A31166 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	A31166	SRX467445	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASFLG-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-22	TARGET-21-PASFLG-41A-03R A31166 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	A31166-1..fastq	SRR1799031	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1799031/SRR1799031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C2DMCACXX_8_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165025	@dbgap@:reads/SRP012000/SRS555085/SRX467445/SRR1165025/SRR1165025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASFLG-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASFLG-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.exon.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.gene.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-09A-01R.fusion.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-09A-01R.indel.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1..1/A24328.fastq	SRR1798988	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1798988/SRR1798988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASIGA-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASIGA-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.exon.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.gene.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-09A-01R.fusion.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-09A-01R.indel.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-09A-01R	RNA	EFO	SRS552635		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-09A-01R A24328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24328	SRX467426	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-09A-01R A24328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1343-1./A24328.fastq	SRR1799025	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1799025/SRR1799025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24328_2_lanes_dupsFlagged_mdfixed.bam	SRR1165020	@dbgap@:reads/SRP012000/SRS552635/SRX467426/SRR1165020/SRR1165020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASIGA-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASIGA-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.exon.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.gene.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.isoform.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-41A-01R.fusion.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-41A-01R.indel.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24329.fastq	SRR1798993	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798993/SRR1798993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASIGA-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASIGA-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.exon.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.gene.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASIGA-41A-01R.isoform.quantification.txt	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-41A-01R.fusion.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASIGA-41A-01R.indel.vcf	3			
TARGET-21-PASIGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASIGA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASIGA-41A-01R	RNA	EFO	SRS552632		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASIGA-41A-01R A24329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24329	SRX467458	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASIGA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASIGA-41A-01R A24329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24329.fastq	SRR1798999	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1798999/SRR1798999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24329_2_lanes_dupsFlagged_mdfixed.bam	SRR1165000	@dbgap@:reads/SRP012000/SRS552632/SRX467458/SRR1165000/SRR1165000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASIGA-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASIGA-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-09A-01R.exon.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-09A-01R.gene.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-09A-01R.fusion.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-09A-01R.indel.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-09A-01R	RNA	EFO	SRS552627		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-09A-01R A24365 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24365	SRX467424	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASLZE-09A-01R A24365 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24365.fastq	SRR1798990	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1798990/SRR1798990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165002	@dbgap@:reads/SRP012000/SRS552627/SRX467424/SRR1165002/SRR1165002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASLZE-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASLZE-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.exon.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.gene.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-41A-02R.fusion.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-41A-02R.indel.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1./A24363.fastq	SRR1798971	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798971/SRR1798971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASLZE-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASLZE-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.exon.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.gene.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASLZE-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-41A-02R.fusion.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASLZE-41A-02R.indel.vcf	3			
TARGET-21-PASLZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASLZE-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASLZE-41A-02R	RNA	EFO	SRS552631		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASLZE-41A-02R A24363 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24363	SRX472280	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASLZE-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASLZE-41A-02R A24363 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1352-1..1/A24363.fastq	SRR1798996	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1798996/SRR1798996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24363_2_lanes_dupsFlagged_mdfixed.bam	SRR1171164	@dbgap@:reads/SRP012000/SRS552631/SRX472280/SRR1171164/SRR1171164.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASLZE-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASLZE-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-09A-01R.exon.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-09A-01R.gene.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-09A-01R.fusion.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-09A-01R.indel.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-09A-01R	RNA	EFO	SRS555086		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-09A-01R A24344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	A24344	SRX467423	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-09A-01R A24344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1335-1./A24344.fastq	SRR1798977	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1798977/SRR1798977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164993	@dbgap@:reads/SRP012000/SRS555086/SRX467423/SRR1164993/SRR1164993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASNKZ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASNKZ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.exon.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.gene.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-41A-02R.fusion.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-41A-02R.indel.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1..1/A24345.fastq	SRR1798965	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1798965/SRR1798965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASNKZ-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.exon.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.gene.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASNKZ-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-41A-02R.fusion.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASNKZ-41A-02R.indel.vcf	3			
TARGET-21-PASNKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASNKZ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASNKZ-41A-02R	RNA	EFO	SRS552643		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASNKZ-41A-02R A24345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24345	SRX467435	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASNKZ-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASNKZ-41A-02R A24345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1338-1./A24345.fastq	SRR1799026	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1799026/SRR1799026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24345_2_lanes_dupsFlagged_mdfixed.bam	SRR1165010	@dbgap@:reads/SRP012000/SRS552643/SRX467435/SRR1165010/SRR1165010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASNKZ-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASNKZ-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.exon.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.gene.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-09A-01R.fusion.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-09A-01R.indel.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1..1/A24311.fastq	SRR1798969	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798969/SRR1798969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASSLT-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASSLT-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.exon.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.gene.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-09A-01R.fusion.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-09A-01R.indel.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-09A-01R	RNA	EFO	SRS552623		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-09A-01R A24311 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24311	SRX467462	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-09A-01R A24311 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1345-1./A24311.fastq	SRR1798997	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1798997/SRR1798997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24311_2_lanes_dupsFlagged_mdfixed.bam	SRR1164986	@dbgap@:reads/SRP012000/SRS552623/SRX467462/SRR1164986/SRR1164986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASSLT-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASSLT-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-41A-02R.exon.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-41A-02R.gene.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASSLT-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-41A-02R.fusion.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASSLT-41A-02R.indel.vcf	3			
TARGET-21-PASSLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASSLT-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASSLT-41A-02R	RNA	EFO	SRS552649		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASSLT-41A-02R A24312 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24312	SRX467429	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASSLT-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASSLT-41A-02R A24312 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1351-1./A24312.fastq	SRR1798958	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1798958/SRR1798958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_3_GATCAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165009	@dbgap@:reads/SRP012000/SRS552649/SRX467429/SRR1165009/SRR1165009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASSLT-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASSLT-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-09A-01R.exon.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-09A-01R.gene.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASTZK-09A-01R.fusion.vcf	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASTZK-09A-01R.indel.vcf	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-09A-01R	RNA	EFO	SRS552608		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-09A-01R A24334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24334	SRX467425	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-04-04	TARGET-21-PASTZK-09A-01R A24334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	IX1329-1..1/A24334.fastq	SRR1798974	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1798974/SRR1798974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1V55ACXX_8_ATGTCA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165028	@dbgap@:reads/SRP012000/SRS552608/SRX467425/SRR1165028/SRR1165028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASTZK-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASTZK-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-41A-03R.exon.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-41A-03R.gene.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASTZK-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASTZK-41A-03R.fusion.vcf	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASTZK-41A-03R.indel.vcf	3			
TARGET-21-PASTZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASTZK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASTZK-41A-03R	RNA	EFO	SRS552638		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASTZK-41A-03R A24335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24335	SRX467468	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASTZK-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASTZK-41A-03R A24335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24335.fastq	SRR1799013	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1799013/SRR1799013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_TTAGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165016	@dbgap@:reads/SRP012000/SRS552638/SRX467468/SRR1165016/SRR1165016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASTZK-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASTZK-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-09A-01R.exon.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-09A-01R.gene.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASVJS-09A-01R.fusion.vcf	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASVJS-09A-01R.indel.vcf	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-09A-01R	RNA	EFO	SRS555089		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-09A-01R A24359 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24359	SRX467452	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-09A-01R A24359 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24359.fastq	SRR1799023	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1799023/SRR1799023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ACAGTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165027	@dbgap@:reads/SRP012000/SRS555089/SRX467452/SRR1165027/SRR1165027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASVJS-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASVJS-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-41A-02R.exon.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-41A-02R.gene.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASVJS-41A-02R.isoform.quantification.txt	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASVJS-41A-02R.fusion.vcf	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASVJS-41A-02R.indel.vcf	3			
TARGET-21-PASVJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASVJS-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASVJS-41A-02R	RNA	EFO	SRS552648		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASVJS-41A-02R A24360 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24360	SRX467463	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASVJS-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASVJS-41A-02R A24360 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24360.fastq	SRR1798992	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1798992/SRR1798992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_AAACAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164987	@dbgap@:reads/SRP012000/SRS552648/SRX467463/SRR1164987/SRR1164987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASVJS-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASVJS-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-09A-01R.exon.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-09A-01R.gene.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-09A-01R.fusion.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-09A-01R.indel.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-09A-01R	RNA	EFO	SRS555088		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-09A-01R A24317 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24317	SRX467450	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-09A-01R A24317 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24317.fastq	SRR1799011	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1799011/SRR1799011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CCAACA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164998	@dbgap@:reads/SRP012000/SRS555088/SRX467450/SRR1164998/SRR1164998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASYEJ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASYEJ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.exon.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.gene.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-41A-03R.fusion.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-41A-03R.indel.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1./A24318.fastq	SRR1798983	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1798983/SRR1798983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASYEJ-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASYEJ-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.exon.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.gene.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYEJ-41A-03R.isoform.quantification.txt	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-41A-03R.fusion.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYEJ-41A-03R.indel.vcf	3			
TARGET-21-PASYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYEJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYEJ-41A-03R	RNA	EFO	SRS552619		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYEJ-41A-03R A24318 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24318	SRX467442	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYEJ-41A-03R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PASYEJ-41A-03R A24318 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1353-1..1/A24318.fastq	SRR1799004	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1799004/SRR1799004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24318_2_lanes_dupsFlagged_mdfixed.bam	SRR1164996	@dbgap@:reads/SRP012000/SRS552619/SRX467442/SRR1164996/SRR1164996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASYEJ-41A-03R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASYEJ-41A-03R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-09A-01R.exon.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-09A-01R.gene.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-09A-01R.isoform.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYWA-09A-01R.fusion.vcf	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYWA-09A-01R.indel.vcf	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-09A-01R	RNA	EFO	SRS552607		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-09A-01R A24351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24351	SRX467466	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-09A-01R A24351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1330-1./A24351.fastq	SRR1799021	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1799021/SRR1799021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_5_ATACGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165011	@dbgap@:reads/SRP012000/SRS552607/SRX467466/SRR1165011/SRR1165011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASYWA-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASYWA-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-41A-01R.exon.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-41A-01R.gene.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PASYWA-41A-01R.isoform.quantification.txt	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYWA-41A-01R.fusion.vcf	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PASYWA-41A-01R.indel.vcf	3			
TARGET-21-PASYWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PASYWA-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PASYWA-41A-01R	RNA	EFO	SRS552616		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PASYWA-41A-01R A24352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24352	SRX467449	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PASYWA-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PASYWA-41A-01R A24352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1331-1./A24352.fastq	SRR1798998	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1798998/SRR1798998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164997	@dbgap@:reads/SRP012000/SRS552616/SRX467449/SRR1164997/SRR1164997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PASYWA-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PASYWA-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-09A-01R.exon.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-09A-01R.gene.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATAIJ-09A-01R.fusion.vcf	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATAIJ-09A-01R.indel.vcf	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-09A-01R	RNA	EFO	SRS552636		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-09A-01R A24324 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24324	SRX467434	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATAIJ-09A-01R A24324 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24324.fastq	SRR1799003	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1799003/SRR1799003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_TAGCTT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165038	@dbgap@:reads/SRP012000/SRS552636/SRX467434/SRR1165038/SRR1165038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATAIJ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATAIJ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-42A-01R.exon.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-42A-01R.gene.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATAIJ-42A-01R.isoform.quantification.txt	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATAIJ-42A-01R.fusion.vcf	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATAIJ-42A-01R.indel.vcf	3			
TARGET-21-PATAIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATAIJ-42A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Cancer - Peripheral Blood, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATAIJ-42A-01R	RNA	EFO	SRS552641		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATAIJ-42A-01R A24325 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24325	SRX467436	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATAIJ-42A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATAIJ-42A-01R A24325 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1332-1./A24325.fastq	SRR1798961	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1798961/SRR1798961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164989	@dbgap@:reads/SRP012000/SRS552641/SRX467436/SRR1164989/SRR1164989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATAIJ-42A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATAIJ-42A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATHIU-09A-01R.exon.quantification.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATHIU-09A-01R.gene.quantification.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATHIU-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATHIU-09A-01R.fusion.vcf	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATHIU-09A-01R.indel.vcf	3			
TARGET-21-PATHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATHIU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATHIU-09A-01R	RNA	EFO	SRS552650		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATHIU-09A-01R A24362 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24362	SRX467441	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATHIU-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATHIU-09A-01R A24362 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1350-1./A24362.fastq	SRR1798984	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1798984/SRR1798984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165023	@dbgap@:reads/SRP012000/SRS552650/SRX467441/SRR1165023/SRR1165023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATHIU-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATHIU-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-09A-01R.exon.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-09A-01R.gene.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-09A-01R.fusion.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-09A-01R.indel.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-09A-01R	RNA	EFO	SRS552629		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-09A-01R A24326 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24326	SRX467454	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATISD-09A-01R A24326 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1339-1./A24326.fastq	SRR1799000	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1799000/SRR1799000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164999	@dbgap@:reads/SRP012000/SRS552629/SRX467454/SRR1164999/SRR1164999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATISD-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATISD-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.exon.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.gene.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.isoform.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-41A-01R.fusion.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-41A-01R.indel.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1..1/A24327.fastq	SRR1798960	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1798960/SRR1798960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATISD-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATISD-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.exon.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.gene.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATISD-41A-01R.isoform.quantification.txt	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-41A-01R.fusion.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATISD-41A-01R.indel.vcf	3			
TARGET-21-PATISD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATISD-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATISD-41A-01R	RNA	EFO	SRS552613		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATISD-41A-01R A24327 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24327	SRX467447	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATISD-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATISD-41A-01R A24327 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1348-1./A24327.fastq	SRR1799032	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1799032/SRR1799032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24327_2_lanes_dupsFlagged_mdfixed.bam	SRR1164988	@dbgap@:reads/SRP012000/SRS552613/SRX467447/SRR1164988/SRR1164988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATISD-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATISD-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-09A-01R.exon.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-09A-01R.gene.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATJMY-09A-01R.fusion.vcf	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATJMY-09A-01R.indel.vcf	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-09A-01R	RNA	EFO	SRS552654		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-09A-01R A24338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24338	SRX467420	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-09A-01R A24338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1336-1./A24338.fastq	SRR1799014	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1799014/SRR1799014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165035	@dbgap@:reads/SRP012000/SRS552654/SRX467420/SRR1165035/SRR1165035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATJMY-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATJMY-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-41A-01R.exon.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-41A-01R.gene.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATJMY-41A-01R.isoform.quantification.txt	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATJMY-41A-01R.fusion.vcf	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATJMY-41A-01R.indel.vcf	3			
TARGET-21-PATJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATJMY-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATJMY-41A-01R	RNA	EFO	SRS552615		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATJMY-41A-01R A24339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24339	SRX467419	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATJMY-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATJMY-41A-01R A24339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24339.fastq	SRR1798995	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1798995/SRR1798995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165018	@dbgap@:reads/SRP012000/SRS552615/SRX467419/SRR1165018/SRR1165018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATJMY-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATJMY-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-03A-01R.exon.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-03A-01R.gene.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-03A-01R.isoform.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKBK-03A-01R.fusion.vcf	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKBK-03A-01R.indel.vcf	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-03A-01R	RNA	EFO	SRS552634		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-03A-01R A24315 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24315	SRX467448	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKBK-03A-01R A24315 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1334-1./A24315.fastq	SRR1799016	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1799016/SRR1799016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1UP1ACXX_1_AGCGCT_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165006	@dbgap@:reads/SRP012000/SRS552634/SRX467448/SRR1165006/SRR1165006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKBK-03A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKBK-03A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-41A-02R.exon.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-41A-02R.gene.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKBK-41A-02R.isoform.quantification.txt	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKBK-41A-02R.fusion.vcf	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKBK-41A-02R.indel.vcf	3			
TARGET-21-PATKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKBK-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKBK-41A-02R	RNA	EFO	SRS555090		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKBK-41A-02R A24316 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24316	SRX467456	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKBK-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKBK-41A-02R A24316 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1346-1./A24316.fastq	SRR1798956	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1798956/SRR1798956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1P2NACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165030	@dbgap@:reads/SRP012000/SRS555090/SRX467456/SRR1165030/SRR1165030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKBK-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKBK-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.exon.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.gene.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-09A-01R.fusion.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-09A-01R.indel.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1./A24319.fastq	SRR1798976	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798976/SRR1798976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKKJ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.exon.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.gene.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-09A-01R.fusion.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-09A-01R.indel.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-09A-01R	RNA	EFO	SRS552630		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-09A-01R A24319 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24319	SRX467431	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKKJ-09A-01R A24319 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1349-1..1/A24319.fastq	SRR1798986	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1798986/SRR1798986.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24319_2_lanes_dupsFlagged_mdfixed.bam	SRR1165019	@dbgap@:reads/SRP012000/SRS552630/SRX467431/SRR1165019/SRR1165019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKKJ-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKKJ-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-41A-01R.exon.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-41A-01R.gene.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKKJ-41A-01R.isoform.quantification.txt	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-41A-01R.fusion.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKKJ-41A-01R.indel.vcf	3			
TARGET-21-PATKKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKKJ-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKKJ-41A-01R	RNA	EFO	SRS552640		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKKJ-41A-01R A24320 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	A24320	SRX467469	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKKJ-41A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKKJ-41A-01R A24320 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1354-1./A24320.fastq	SRR1799007	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1799007/SRR1799007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D2234ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1164991	@dbgap@:reads/SRP012000/SRS552640/SRX467469/SRR1164991/SRR1164991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKKJ-41A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKKJ-41A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-09A-01R.exon.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-09A-01R.gene.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-09A-01R.isoform.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-09A-01R.fusion.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-09A-01R.indel.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-09A-01R	RNA	EFO	SRS552609		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-09A-01R A24340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24340	SRX467440	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-23	TARGET-21-PATKWH-09A-01R A24340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1328-1./A24340.fastq	SRR1799028	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1799028/SRR1799028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1T5UACXX_3_CACCGG_withJunctionsOnGenome_dupsFlagged_mdfixed.bam	SRR1165014	@dbgap@:reads/SRP012000/SRS552609/SRX467440/SRR1165014/SRR1165014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKWH-09A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKWH-09A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.exon.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.gene.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.isoform.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-41A-02R.fusion.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-41A-02R.indel.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-28	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1./A24341.fastq	SRR1798959	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798959/SRR1798959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKWH-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKWH-41A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.exon.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.gene.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-21-PATKWH-41A-02R.isoform.quantification.txt	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-41A-02R.fusion.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-21-PATKWH-41A-02R.indel.vcf	3			
TARGET-21-PATKWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-21-PATKWH-41A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Cancer - Bone Marrow, Post-treatment"	fredhutch.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-21-PATKWH-41A-02R	RNA	EFO	SRS552614		bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-UnstrandedLite:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-21-PATKWH-41A-02R A24341 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A24341	SRX467437	"RNA-Seq analysis of acute myeloid leukemia sample TARGET-21-PATKWH-41A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-06-18	TARGET-21-PATKWH-41A-02R A24341 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1344-1..1/A24341.fastq	SRR1798979	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1798979/SRR1798979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A24341_2_lanes_dupsFlagged_mdfixed.bam	SRR1165032	@dbgap@:reads/SRP012000/SRS552614/SRX467437/SRR1165032/SRR1165032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-21-PATKWH-41A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-21-PATKWH-41A-02R.format_1.3.rna_tumor.maf.txt	3
