PatientID	TCGAID	Barcode	RTPCR.EGFR	RTPCR.EGFRvIII	NS.EGFR	NS.EGFRvIII	NS.EGFRvIII.class	NS.EGFRvIII.score	NS.EGFRvII	NS.EGFRvII.score	NS.EGFREX28	NS.EGFRvV.score	NS.PDGFRA	NS.PDGFRAD89	NS.PDGFRAD89.score	RNAS.EGFR	RNAS.EGFRvIII	RNAS.EGFRvII	RNAS.PDGFRA	RNAS.PDGFRAD89	CNA.EGFR	CNA.PDGFRA	VIII.pv.acgh	VIII.SNP6.0.Delta	MUT.EGFR	Exp.Class	Methylation.GCIMP	Methylation.Class	CLIN.survival	CLIN.censor
3	TCGA-02-0003-01A-01R-0676-04	89575325	1.54	0.0185	24208.0492408578	67.42	<1%	2	336.86	3	31588.22	1	5048.94	34.84	1	NA	NA	NA	NA	NA	5.06	-0.01	0.262179888	0	TRUE	Proneural	NON G-CIMP	CL_3	4.73	TRUE
9	TCGA-02-0009-01A-01R-0676-04	89575376	1.76	3.2029	66188.4365433673	44328.98	>10%	4	318.56	2	77368.14	1	2160.4	10.77	1	NA	NA	NA	NA	NA	5.97	-0.01	0.000000089	0	FALSE	Classical	NON G-CIMP	CL_4	10.59	TRUE
10	TCGA-02-0010-01A-01R-0676-04	89575373	0.02	0.0011	337.854704797048	11.6	Absent	1	11.6	1	402.63	1	9508.9	71.08	2	NA	NA	NA	NA	NA	0.12	-0.05	0.515881393	0	TRUE	Proneural	G-CIMP	G-CIMP	35.41	TRUE
16	TCGA-02-0016-01A-01R-0677-04	81177725	1.18	0.0015	41628.1905829597	29.54	Absent	1	289.55	2	62330.81	1	441.75	20.03	1	NA	NA	NA	NA	NA	3.06	0	0.158647758	NA	TRUE	Classical	NON G-CIMP	NA	55.86	FALSE
21	TCGA-02-0021-01A-01R-0676-04	89575348	2.07	0.0074	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6.04	0	0.31187213	NA	NA	NA	NA	NA	NA	NA
23	TCGA-02-0023-01B-01R-0677-04	81177794	1.62	0.0029	22907.8301328502	34.45	Absent	1	117.09	2	29816.08	1	199.73	16.74	1	NA	NA	NA	NA	NA	4.43	0.01	0.160554384	NA	TRUE	Classical	NON G-CIMP	NA	20.12	TRUE
25	TCGA-02-0025-01A-01R-0677-04	81177731	0.02	0.0002	743.862814465408	58.64	Absent	1	13.81	1	871.94	1	1672.44	39.42	1	NA	NA	NA	NA	NA	0.15	-0.03	0.807170015	NA	FALSE	Mesenchymal	NON G-CIMP	NA	42.74	TRUE
26	TCGA-02-0026-01B-01R-0677-04	81177705	0.06	0.0001	2136.31444050092	5.27	Absent	1	14.89	1	2396.48	1	1261.25	7.94	1	NA	NA	NA	NA	NA	0.04	0.05	0.825962286	0	FALSE	Proneural	G-CIMP	G-CIMP	24.59	TRUE
28	TCGA-02-0028-01A-01R-0676-04	89575372	0.02	0.0002	181.069101429015	2.84	Absent	1	13.86	1	227.01	1	4405.34	33.16	1	NA	NA	NA	NA	NA	0.03	0.01	0.783605372	0	FALSE	Proneural	G-CIMP	G-CIMP	90.58	TRUE
33	TCGA-02-0033-01A-01R-0676-04	89574124	0.02	0	305.299928160919	6.2	Absent	1	19.21	1	359.92	1	423.64	7.5	1	11	0	0	26	0	0.26	-0.01	0.346543138	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	2.83	TRUE
43	TCGA-02-0043-01A-01R-0676-04	89573892	1.35	0.0102	32415.229738422	34.67	<1%	2	146.36	2	866.58	3	4352.74	51.1	3	NA	NA	NA	NA	NA	5.81	0.01	0.945355443	0	FALSE	Classical	NON G-CIMP	CL_4	18.28	TRUE
46	TCGA-02-0046-01A-01R-0676-04	89575352	0.52	0.0034	11875.6167647995	22.33	Absent	1	80.06	2	16807.69	1	2243.65	21.08	1	NA	NA	NA	NA	NA	4.49	-0.01	0.411155239	0	TRUE	Proneural	NON G-CIMP	CL_3	6.84	TRUE
47	TCGA-02-0047-01A-01R-0676-04	89575397	0.04	0.0002	341.962141634301	8.93	Absent	1	11.19	1	550.39	1	4673.65	53.11	1	20	0	0	158	1	0	0	0.494580115	0	FALSE	Proneural	NON G-CIMP	CL_6	14.7	TRUE
51	TCGA-02-0051-01A-01R-0677-04	81177746	0.03	0.0002	708.216979492527	12.31	Absent	1	13.34	1	777.09	1	1778.29	11.28	1	NA	NA	NA	NA	NA	0.57	-0.07	0.933577429	NA	NA	Mesenchymal	NON G-CIMP	NA	15.06	TRUE
55	TCGA-02-0055-01A-01R-0676-04	89575326	0.01	0	256.753704518779	20.12	Absent	1	29.68	1	302.17	1	2984	10.56	1	10	0	0	117	0	0.15	0.04	0.732400537	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	2.5	TRUE
58	TCGA-02-0058-01A-01R-0676-04	89575349	0.16	0.0009	2106.15353961557	22.85	Absent	1	30.79	1	2352.42	1	384.3	4.97	1	NA	NA	NA	NA	NA	0.04	0.02	0.401580737	0	FALSE	Proneural	G-CIMP	G-CIMP	8.35	TRUE
60	TCGA-02-0060-01A-01R-0676-04	89575304	0.04	0.0003	513.467592592592	13.85	Absent	1	18.67	1	630.74	1	4144.12	34.74	1	NA	NA	NA	NA	NA	0.05	-0.29	0.59399155	0	FALSE	Proneural	NON G-CIMP	CL_1	6.02	TRUE
68	TCGA-02-0068-01A-01R-0677-04	81177778	2.35	0.0055	47120.1766226398	55.16	<1%	2	377.14	2	61357.44	1	508.54	24.07	1	NA	NA	NA	NA	NA	4.98	0.01	0.227249508	0	FALSE	Classical	NON G-CIMP	NA	26.43	TRUE
74	TCGA-02-0074-01A-01R-0676-04	89575306	0.05	0.0003	795.657676348548	16.89	Absent	1	30.8	1	1016.18	1	54993.3	227.48	2	NA	NA	NA	NA	NA	0.3	3.91	0.499324651	0	FALSE	Proneural	NON G-CIMP	CL_2	10.19	TRUE
75	TCGA-02-0075-01A-01R-0676-04	89575395	0.05	0.0003	608.686512913415	9.32	Absent	1	12.35	1	844.04	1	1037.78	10.08	1	NA	NA	NA	NA	NA	0.52	0.24	0.518601178	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	20.84	TRUE
86	TCGA-02-0086-01A-01R-0676-04	89575305	0.04	0.0003	443.062728658537	10.93	Absent	1	22.52	1	393.39	1	135.11	4.31	1	NA	NA	NA	NA	NA	0.53	0.03	0.553137468	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	8.81	TRUE
89	TCGA-02-0089-01A-01R-0676-04	89575394	0.62	0.0028	12081.445	16.99	Absent	1	72.95	1	12836.97	1	336.79	12.99	1	NA	NA	NA	NA	NA	4.98	-0.01	0.347541935	0	TRUE	Neural	NON G-CIMP	CL_3	16.93	TRUE
99	TCGA-02-0099-01A-01R-0676-04	89575329	0.04	0.0001	564.578851783221	9.26	Absent	1	9.26	1	647.18	1	1819.45	16.25	1	NA	NA	NA	NA	NA	0.43	0.04	0.382725084	0	FALSE	Mesenchymal	NON G-CIMP	CL_3	3.48	TRUE
104	TCGA-02-0104-01A-01R-0677-04	81177779	0.01	0.0001	1125.72772233894	46.38	Absent	1	20.45	1	1112.76	1	1696.19	30.17	1	NA	NA	NA	NA	NA	0	0.01	0.482165672	NA	FALSE	Proneural	G-CIMP	G-CIMP	65	TRUE
106	TCGA-02-0106-01A-01R-0676-04	89575317	1.08	1.5839	14570.6541581284	9435.9	>10%	4	96.52	2	16240.82	1	436.86	5.64	1	NA	NA	NA	NA	NA	4.05	-0.12	0.031701096	1	NA	Mesenchymal	NON G-CIMP	NA	11.67	TRUE
107	TCGA-02-0107-01A-01R-0676-04	89575370	0.06	0.0004	724.763564213565	16.36	Absent	1	18.07	1	808.41	1	316.79	4.41	1	NA	NA	NA	NA	NA	0.19	0	0.518420245	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	17.65	TRUE
114	TCGA-02-0114-01A-01R-0676-04	89575378	0.15	0.001	2297.46527777778	17.87	Absent	1	27.51	1	2586.63	1	4791.53	22.69	1	NA	NA	NA	NA	NA	0.06	0.04	0.688588241	0	FALSE	Proneural	G-CIMP	G-CIMP	99.95	TRUE
115	TCGA-02-0115-01A-01R-0676-04	89575354	0	0.0004	2047.77650176679	15.83	Absent	1	13.36	1	2003.28	1	119.65	5.94	1	NA	NA	NA	NA	NA	0.4	0.05	0.875602717	0	FALSE	Neural	NON G-CIMP	CL_2	15.65	TRUE
116	TCGA-02-0116-01A-01R-0676-04	89575371	1.78	0.004	43859.0808013866	36.15	Absent	1	186.89	2	49716.15	1	1736.48	22.09	1	NA	NA	NA	NA	NA	4.38	0.01	0.289231015	0	TRUE	Mesenchymal	NON G-CIMP	CL_4	48.95	TRUE
124	TCGA-06-0124-01A-01R-0676-04	89575356	0.2	0.0003	2898.47515089564	10.98	Absent	1	29.41	1	3514.98	1	969.13	6.37	1	92	0	0	50	0	2.56	0	0.599699549	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	20.35	TRUE
125	TCGA-06-0125-01A-01R-0676-04	89575346	1.38	0.1997	38110.3115047771	1640.72	1-10%	3	151.56	2	42313.37	1	1704.42	9.69	1	1164	17	0	19	0	5.38	-0.02	0.532501432	0	TRUE	Classical	NON G-CIMP	CL_4	47.61	TRUE
126	TCGA-06-0126-01A-01R-0676-04	89575307	1.56	1.8864	40910.2980769231	16105.36	>10%	4	260.14	2	46968.34	1	1217.72	14.35	1	552	138	0	16	0	6.24	0.01	0.963953095	0	FALSE	Classical	NON G-CIMP	CL_3	6.9	TRUE
127	TCGA-06-0127-01A-01R-0677-04	81177793	1.1	0.2472	44259.3744785808	2999.39	1-10%	3	161.79	2	41897.48	1	533.26	5.44	1	NA	NA	NA	NA	NA	4.04	-0.04	0.377502875	0	TRUE	Classical	NON G-CIMP	NA	3.95	TRUE
128	TCGA-06-0128-01A-01R-0676-04	89575332	0.05	0	1227.13722025913	19.58	Absent	1	28.87	1	1257.33	1	1670.68	10.29	1	NA	NA	NA	NA	NA	0.08	-0.04	0.939803695	0	FALSE	Proneural	G-CIMP	G-CIMP	22.72	TRUE
130	TCGA-06-0130-01A-01R-0676-04	89575331	0.04	0	383.365656565656	14.14	Absent	1	15.34	1	433.55	1	2365.69	5.78	1	10	0	0	32	1	0.38	0.07	0.971924575	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	12.95	TRUE
132	TCGA-06-0132-01A-02R-0676-04	89575382	0.69	0.003	11159.7918682704	44.37	Absent	1	83.4	1	11992.47	1	326.27	37.86	1	216	0	0	13	0	3.75	0.01	0.481460008	0	FALSE	Neural	NON G-CIMP	NA	25.35	TRUE
133	TCGA-06-0133-01A-02R-0676-04	89575369	3.02	0.4683	50224.2604957695	2454.89	1-10%	3	356.8	2	60425.12	1	652.97	8.21	1	NA	NA	NA	NA	NA	5.18	-0.03	0.503102876	0	FALSE	Neural	NON G-CIMP	CL_2	14.3	TRUE
139	TCGA-06-0139-01A-01R-0676-04	89575380	0.01	0.0001	240.219696969697	14.14	Absent	1	15.46	1	228.39	1	871.13	10.2	1	NA	NA	NA	NA	NA	0.13	0.01	0.853085923	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	11.9	TRUE
141	TCGA-06-0141-01A-01R-0676-04	89575322	0.09	0.0004	1423.12113346312	7.41	Absent	1	14.74	1	1416.71	1	648.83	5.58	1	15	0	0	26	1	0.16	0.01	0.949921215	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	10.29	TRUE
143	TCGA-06-0143-01A-01R-0676-04	89575355	1.25	0.0199	18118.1787541254	101.82	<1%	2	12750.77	4	24672.52	1	1444.67	34.61	1	NA	NA	NA	NA	NA	5.04	1.68	0.385842794	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	11.74	TRUE
147	TCGA-06-0147-01A-01R-0676-04	89575345	0.02	0.0002	213.254427833814	10.78	Absent	1	19.58	1	270.96	1	506.69	22.52	1	NA	NA	NA	NA	NA	0.15	0.02	0.979859757	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	17.79	TRUE
155	TCGA-06-0155-01B-01R-0678-04	81178256	0.34	0.0005	5502.7955658705	34.25	Absent	1	33.06	1	4363.96	1	2129.04	27.13	1	58	0	0	103	0	2.36	1.41	0.209307	0	TRUE	Mesenchymal	NON G-CIMP	CL_3	10.45	TRUE
156	TCGA-06-0156-01A-01R-0676-04	89575358	0.14	0.1324	2843.42618110236	917.31	>10%	4	27.71	1	4117.71	1	7684.1	107.86	3	71	6	0	100	1	0.99	1.31	0.362574513	NA	FALSE	Proneural	NON G-CIMP	NA	5.85	TRUE
157	TCGA-06-0157-01A-01R-0676-04	89575392	1.29	0.0012	26610.1116646523	53.53	Absent	1	224.24	2	30928.65	1	511.27	32.89	1	456	0	0	10	0	4.47	-0.02	0.16179656	0	TRUE	Classical	NON G-CIMP	NA	3.19	TRUE
164	TCGA-06-0164-01A-01R-0676-04	89574123	0.03	0.0025	349.449115239466	12.74	Absent	1	10.93	1	359.38	1	388.27	2.81	1	NA	NA	NA	NA	NA	0.38	0.04	0.433251979	0	NA	Mesenchymal	NON G-CIMP	NA	56.88	TRUE
174	TCGA-06-0174-01A-01R-0676-04	89575391	0.06	0.0007	1304.34	22.25	Absent	1	16.35	1	1339.76	1	58444.7	300.86	2	35	0	0	2826	18	1.28	4.77	0.107124882	0	TRUE	Proneural	NON G-CIMP	NA	3.22	TRUE
177	TCGA-06-0177-01A-01R-0677-04	81177773	0.01	0.0001	199.585483870968	17.55	Absent	1	19.05	1	277.82	1	31475.29	328.97	3	NA	NA	NA	NA	NA	0.49	3.47	0.796926697	0	NA	Proneural	NON G-CIMP	NA	4.14	TRUE
179	TCGA-06-0179-01A-02R-0677-04	81177752	0.12	0.2286	4607.74861111111	2681.79	>10%	4	35.55	1	4281.29	1	1113.39	13.09	1	NA	NA	NA	NA	NA	3.36	0	0.224211862	0	NA	Neural	NON G-CIMP	NA	20.25	TRUE
187	TCGA-06-0187-01A-01R-0676-04	89575381	7.56	0.0244	70240.7881944445	67.27	Absent	1	558.85	2	90746.32	1	37.15	2.2	1	3066	0	0	91	0	5.74	0	0.381569481	0	FALSE	Classical	NON G-CIMP	NA	27.22	TRUE
190	TCGA-06-0190-01A-01R-0676-04	89575321	0.04	0.0003	517.071739352989	9.67	Absent	1	9.67	1	662.79	1	1321.1	6.2	1	16	0	0	50	0	0.35	0.3	0.275915547	0	FALSE	Mesenchymal	NON G-CIMP	NA	10.42	TRUE
194	TCGA-06-0194-01A-01R-0677-04	81177726	0.07	0	871.33128603475	31.05	Absent	1	11.02	1	1051.66	1	221.4	16.03	1	NA	NA	NA	NA	NA	1.19	0	0.847390616	0	NA	Mesenchymal	NON G-CIMP	NA	4.67	TRUE
195	TCGA-06-0195-01B-01R-0676-04	89575367	NA	NA	4653.74212015086	51.99	Absent	1	66.86	1	5643.78	1	2881.88	58.36	1	NA	NA	NA	NA	NA	3.94	0.64	NA	0	FALSE	Neural	NON G-CIMP	NA	7.4	TRUE
210	TCGA-06-0210-01A-01R-0676-04	89575320	0.05	0.0006	690.601744186046	42.96	Absent	1	19.24	1	854.79	1	900.4	42.96	1	26	0	0	68	0	0.27	1.07	0.067373598	0	FALSE	Mesenchymal	NON G-CIMP	NA	7.4	TRUE
211	TCGA-06-0211-01A-01R-0676-04	89575333	0.61	0.995	9715.81151178864	6111.23	>10%	4	79.5	2	12791.58	1	6728.86	100.15	3	417	127	0	548	2	4.96	1.36	0.002321253	0	TRUE	Classical	NON G-CIMP	NA	11.84	TRUE
216	TCGA-06-0216-01B-01R-0677-04	81177789	2.19	0.0115	48046.8790879594	51.16	Absent	1	198.61	2	2857.27	3	80.05	16.2	1	4444	2	4	5	0	3.52	-0.17	0.844311836	0	FALSE	Proneural	NON G-CIMP	NA	24.16	TRUE
219	TCGA-06-0219-01A-01R-0676-04	89575357	0.19	0.2876	6971.38750628457	2442.42	>10%	4	84.26	1	5555.9	1	482.74	54.53	1	267	6	0	13	0	3.88	0.03	0.052096515	1	FALSE	Neural	NON G-CIMP	NA	0.69	TRUE
238	TCGA-06-0238-01A-02R-0677-04	81177792	0.02	0	556.978016584623	20.41	Absent	1	14.86	1	581.93	1	986.79	21.8	1	2	0	0	75	1	0.37	-0.04	0.406704164	0	FALSE	Proneural	NON G-CIMP	NA	13.28	TRUE
246	TCGA-08-0246-01A-01R-0677-04	81177772	2.35	0.0275	43134.0170954265	146.08	<1%	2	142.5	2	58381.56	1	103.09	22.49	1	NA	NA	NA	NA	NA	3.61	0.31	0.465253007	NA	TRUE	Classical	NON G-CIMP	NA	4.18	TRUE
260	TCGA-02-0260-01A-03R-0677-04	81177750	0.87	0.0185	25272.5602318549	123.41	<1%	2	83.56	2	25014.45	1	1385.52	16.18	1	NA	NA	NA	NA	NA	5.14	0.02	0.308057464	0	NA	Classical	NON G-CIMP	NA	16.9	TRUE
269	TCGA-02-0269-01B-01R-0676-04	89575312	2.72	0.0102	68945.7452773313	69.21	<1%	2	320.98	2	75866.26	1	142.39	18.36	1	NA	NA	NA	NA	NA	5.05	-0.03	0.374663455	0	NA	Classical	NON G-CIMP	NA	10.75	TRUE
281	TCGA-02-0281-01A-01R-0676-04	89575337	0.03	0	560.082001795332	8.62	Absent	1	9.38	1	530.38	1	9639.45	26.9	1	NA	NA	NA	NA	NA	0.15	0.58	0.784523987	0	NA	Proneural	NON G-CIMP	NA	3.98	TRUE
325	TCGA-02-0325-01A-01R-0677-04	81177798	0.1	0.0002	1926.76591505246	13.14	Absent	1	20.61	1	2512.34	1	1062.88	21.55	1	NA	NA	NA	NA	NA	0.27	0.01	0.773256188	0	NA	Proneural	NON G-CIMP	NA	10.62	TRUE
333	TCGA-02-0333-01A-02R-0676-04	89574148	1.6	0.6987	44810.5941921556	4623.49	>10%	4	232.37	2	50202.27	1	557.27	19.46	1	NA	NA	NA	NA	NA	5.1	0.01	0.247826581	0	NA	Classical	NON G-CIMP	NA	4.37	TRUE
338	TCGA-02-0338-01A-01R-0676-04	89574129	0	0	41.7495942823016	18.27	Absent	1	13.43	1	59.02	1	7221.97	136.37	3	NA	NA	NA	NA	NA	0.03	0.01	0.878253241	NA	NA	Proneural	NON G-CIMP	NA	10.59	TRUE
339	TCGA-02-0339-01A-01R-0677-04	81177751	0.01	0	279.335136217949	15.94	Absent	1	10.5	1	337.72	1	58915.72	389.31	2	NA	NA	NA	NA	NA	0.05	2.98	0.391099024	0	NA	Proneural	NON G-CIMP	NA	12.39	TRUE
344	TCGA-08-0344-01A-01R-0677-04	81177770	0.28	0.0025	10297.4395863353	19.9	Absent	1	79.92	2	13211.97	1	533.44	9.89	1	NA	NA	NA	NA	NA	0.02	-0.01	0.089836133	NA	FALSE	Proneural	G-CIMP	G-CIMP	115.86	TRUE
346	TCGA-08-0346-01A-01R-0677-04	81177754	0.02	0.0003	194.446281370979	23.11	Absent	1	8.9	1	241.82	1	485.01	31	1	NA	NA	NA	NA	NA	0.28	-0.04	0.22757427	0	NA	Mesenchymal	NON G-CIMP	NA	8.42	TRUE
347	TCGA-08-0347-01A-01R-0677-04	81177753	0.03	0.0002	337.556971783391	11.75	Absent	1	18.2	1	512.82	1	10228.89	135.41	3	NA	NA	NA	NA	NA	0.38	2.45	0.463584337	0	FALSE	Proneural	NON G-CIMP	NA	25.71	TRUE
348	TCGA-08-0348-01A-01R-0677-04	81177724	0.02	0.0001	308.422978752759	19.7	Absent	1	11.52	1	500.12	1	1182.77	19.7	1	NA	NA	NA	NA	NA	0.42	0.02	0.460767405	NA	FALSE	Proneural	NON G-CIMP	NA	12.16	TRUE
352	TCGA-08-0352-01A-01R-0677-04	81177780	1.46	0.0029	20656.9184071974	41.5	Absent	1	133.55	2	31238.93	1	111.46	8.36	1	NA	NA	NA	NA	NA	5.83	-0.06	0.1754902	0	FALSE	Mesenchymal	NON G-CIMP	NA	1.28	TRUE
356	TCGA-08-0356-01A-01R-0677-04	81177706	2.3	0.0075	93329.0031985961	72.27	Absent	1	325.92	2	1265.05	3	416.06	36.64	1	NA	NA	NA	NA	NA	4.21	-0.01	0.871336621	0	FALSE	Classical	NON G-CIMP	NA	31.1	TRUE
357	TCGA-08-0357-01A-01R-0677-04	81177748	0.95	1.6501	16627.81256474	10904.17	>10%	4	164.23	2	23171.12	1	775.91	30.84	1	NA	NA	NA	NA	NA	3.93	-0.01	0.050130541	1	FALSE	Classical	NON G-CIMP	NA	37.58	TRUE
360	TCGA-08-0360-01A-01R-0677-04	81177777	0.11	0.0421	2167.59043065429	379.96	>10%	4	15.21	1	2381.94	1	2525.83	11.66	1	NA	NA	NA	NA	NA	1.44	0.01	0.0000000624	NA	FALSE	Mesenchymal	NON G-CIMP	NA	15.39	TRUE
390	TCGA-08-0390-01A-01R-0677-04	81177771	0.04	0.0001	1054.74422105672	16.28	Absent	1	8.19	1	1273.23	1	630.37	20.78	1	NA	NA	NA	NA	NA	1.17	0.02	0.603183077	0	TRUE	Mesenchymal	NA	NA	13.97	TRUE
392	TCGA-08-0392-01A-01R-0677-04	81177795	0.03	0	312.278229966755	66.66	Absent	1	20.45	1	409.55	1	47.21	32.61	1	NA	NA	NA	NA	NA	0.31	0.04	0.853917713	0	NA	Mesenchymal	NON G-CIMP	NA	0.72	TRUE
397	TCGA-06-0397-01A-01R-0676-04	89575383	0.02	0.0001	221.821912650602	28.81	Absent	1	12.45	1	277.44	1	126.95	15.72	1	NA	NA	NA	NA	NA	0.43	-0.02	0.625884038	0	NA	Mesenchymal	NON G-CIMP	NA	3.98	TRUE
402	TCGA-06-0402-01A-01R-0676-04	89575336	1.52	0.0052	33241.4459786822	56.41	Absent	1	177.51	2	33791.49	1	3886.17	62.57	1	NA	NA	NA	NA	NA	4.9	1.55	0.642647292	0	NA	Classical	NON G-CIMP	NA	0.26	TRUE
409	TCGA-06-0409-01A-02R-0676-04	89575338	1.55	0.0016	13627.1600750085	59.58	Absent	1	129.02	2	17018.51	1	79.11	35.72	1	NA	NA	NA	NA	NA	4.75	0.04	0.225066941	0	NA	Mesenchymal	NON G-CIMP	NA	72.36	TRUE
410	TCGA-06-0410-01A-01R-0676-04	89575361	0.01	0	99.4692355715871	11.94	Absent	1	5.38	1	90.72	1	27167.57	20578.88	4	NA	NA	NA	NA	NA	-0.27	3.18	0.875365833	0	NA	Proneural	NON G-CIMP	NA	4.67	TRUE
412	TCGA-06-0412-01A-01R-0676-04	89575342	0.34	0.6844	8642.10084750838	2816.18	>10%	4	76.58	1	11745.42	1	1022.21	31.23	1	NA	NA	NA	NA	NA	3.92	0.73	0.000352785	0	NA	Mesenchymal	NON G-CIMP	NA	9.57	TRUE
413	TCGA-06-0413-01A-01R-0677-04	81177797	0.01	0	83.465350394423	4.8	Absent	1	9.14	1	107.34	1	11144.13	41.15	2	NA	NA	NA	NA	NA	0.46	-0.02	0.935302779	0	NA	Proneural	NON G-CIMP	NA	3.16	TRUE
414	TCGA-06-0414-01A-01R-0676-04	89575314	NA	NA	325.009560906516	31	Absent	1	23	1	379.01	1	1655.05	53	1	NA	NA	NA	NA	NA	0.04	-0.3	NA	0	NA	Proneural	NON G-CIMP	NA	35.11	TRUE
422	TCGA-02-0422-01A-01R-0676-04	89575390	3.39	7.1408	25514.4490448255	18479.93	>10%	4	250.96	2	36746.89	1	564.64	25.51	1	NA	NA	NA	NA	NA	4.44	0	0.0000233	0	NA	Classical	NON G-CIMP	NA	14.5	TRUE
430	TCGA-02-0430-01A-01R-0676-04	89575341	2.94	0.1317	51269.486476089	255.56	<1%	2	324.98	2	51755.46	1	791.67	10.64	1	NA	NA	NA	NA	NA	5.31	0.03	0.381268986	0	NA	Classical	NON G-CIMP	NA	10.55	TRUE
439	TCGA-02-0439-01A-01R-0676-04	89575364	0.39	0.0007	5228.12151515151	36.94	Absent	1	93.42	1	7102.29	1	365.56	36.94	1	NA	NA	NA	NA	NA	1.17	-0.01	0.76135581	NA	NA	Proneural	NON G-CIMP	NA	0.66	TRUE
440	TCGA-02-0440-01A-01R-0676-04	89575315	0.02	0	209.006137865911	30.33	Absent	1	10.33	1	314.34	1	50829.17	64993.58	4	NA	NA	NA	NA	NA	0.35	4.4	0.912771929	0	NA	Proneural	NON G-CIMP	NA	11.34	TRUE
451	TCGA-02-0451-01A-01R-0676-04	89575339	0.91	0.1675	13111.3194444444	1043.49	1-10%	3	142.74	3	19299.17	1	226.57	43.67	1	NA	NA	NA	NA	NA	5.21	0.01	0.433801985	0	NA	Neural	NON G-CIMP	NA	16.18	TRUE
456	TCGA-02-0456-01A-01R-0676-04	89575318	0.07	0.0002	611.982756327211	6.4	Absent	1	10.32	1	774.91	1	1114.02	3.45	1	NA	NA	NA	NA	NA	0.15	-0.03	0.745986636	0	NA	Mesenchymal	NON G-CIMP	NA	3.35	TRUE
509	TCGA-08-0509-01A-01R-0676-04	89575340	0.06	0.0008	625.623694056191	11.86	Absent	1	14.36	1	796.81	1	1681.97	37.74	1	NA	NA	NA	NA	NA	0.3	0	0.988348074	0	NA	Mesenchymal	NON G-CIMP	NA	12.56	TRUE
511	TCGA-08-0511-01A-01R-0676-04	89575360	1.34	0.0477	26505.3225177305	277.4	1-10%	3	152.42	2	3331.01	3	248.56	16.62	1	NA	NA	NA	NA	NA	4.18	0.01	0.788855694	NA	NA	Classical	NON G-CIMP	NA	7.73	TRUE
512	TCGA-08-0512-01A-01R-0676-04	89574105	0.06	0.0002	588.332423410682	10.92	Absent	1	10.92	1	724.11	1	412.9	4.81	1	NA	NA	NA	NA	NA	0.03	0.03	0.470978358	0	NA	Mesenchymal	NON G-CIMP	NA	42.15	TRUE
514	TCGA-08-0514-01A-01R-0676-04	89575335	0.93	0.0022	16130.7812605432	28.94	Absent	1	146.67	2	23995.12	1	1487.66	34.92	1	NA	NA	NA	NA	NA	4.28	0.06	0.454247777	0	NA	Classical	NON G-CIMP	NA	11.08	TRUE
517	TCGA-08-0517-01A-01R-0677-04	81177775	0.03	0.0002	265.563280675973	18.64	Absent	1	11.38	1	386.95	1	1271.94	30.05	1	NA	NA	NA	NA	NA	-0.72	0.04	0.867291028	0	NA	Proneural	G-CIMP	G-CIMP	58.68	TRUE
518	TCGA-08-0518-01A-01R-0676-04	89575319	0.74	1.6707	10521.7892260894	7275.77	>10%	4	100.49	2	14656.03	1	476.87	20.18	1	NA	NA	NA	NA	NA	2.91	-0.02	0.037578204	1	NA	Classical	NON G-CIMP	NA	19.33	TRUE
520	TCGA-08-0520-01A-01R-0677-04	81177776	0.1	0.0004	3048.40395385305	26.55	Absent	1	32.02	1	3677.96	1	918.87	28.37	1	NA	NA	NA	NA	NA	0.46	0.02	0.271020672	0	NA	Neural	NON G-CIMP	NA	10.72	TRUE
522	TCGA-08-0522-01A-01R-0676-04	89575334	0.01	0.0001	120.514593931044	23.57	Absent	1	17.72	1	124.69	1	125.53	16.04	1	NA	NA	NA	NA	NA	0.35	-0.08	0.322493997	NA	NA	Mesenchymal	NON G-CIMP	NA	20.88	TRUE
524	TCGA-08-0524-01A-01R-0676-04	89575359	0.01	0.0001	365.400051318064	14.75	Absent	1	14.75	1	386.03	1	92345.47	399.78	2	NA	NA	NA	NA	NA	0	5.45	0.27706196	0	NA	Proneural	NON G-CIMP	NA	7.23	TRUE
525	TCGA-08-0525-01A-01R-0676-04	89575343	1.99	0.0008	29265.9843936345	30.98	Absent	1	147.37	2	40123.74	1	619.98	20.4	1	NA	NA	NA	NA	NA	5.51	-0.46	0.308514043	0	NA	Classical	NON G-CIMP	NA	15.98	TRUE
531	TCGA-08-0531-01A-01R-0676-04	89575385	2.93	0.916	74742.696969697	7247.25	1-10%	3	466.3	2	92529.08	1	245.48	6.26	1	NA	NA	NA	NA	NA	5.49	0.1	0.842258401	0	NA	Classical	NON G-CIMP	NA	7.56	TRUE
616	TCGA-12-0616-01A-01R-0677-04	81177744	0.12	0.0026	3806.94892612575	69.67	Absent	1	45.9	1	4377.45	1	3070.06	43.26	1	30	0	0	100	1	2.49	0.37	0.495318469	0	TRUE	Proneural	NON G-CIMP	NA	14.7	TRUE
618	TCGA-12-0618-01A-01R-0677-04	81177707	0.17	0.0003	3773.90932804674	26.93	Absent	1	52.86	1	5356.86	1	209.62	24.57	1	194	0	0	22	0	0.38	-0.06	0.114973196	0	FALSE	Proneural	NON G-CIMP	NA	12.95	TRUE
619	TCGA-12-0619-01A-01R-0677-04	81177769	0.85	0.0286	22340.4676069562	162.02	<1%	2	149.92	2	29097.59	1	242.99	8.45	1	1222	3	0	431	3	4.47	-0.17	0.471422876	0	TRUE	Mesenchymal	NON G-CIMP	NA	34.92	TRUE
620	TCGA-12-0620-01A-01R-0677-04	81177745	0.18	0.005	2178.90126193724	48.72	Absent	1	22	1	2834.56	1	676.7	36.31	1	NA	NA	NA	NA	NA	0.32	-0.02	0.829587209	0	FALSE	Mesenchymal	NON G-CIMP	NA	10.45	TRUE
644	TCGA-06-0644-01A-02R-0677-04	81177708	0.03	0	285.11195821678	21.37	Absent	1	14.24	1	370.65	1	203.65	23.4	1	24	0	0	8	0	0.46	-0.03	0.412648152	0	FALSE	Mesenchymal	NON G-CIMP	NA	12.33	FALSE
645	TCGA-06-0645-01A-01R-0677-04	81177781	0.64	0.2353	12698.7129897903	1265.33	1-10%	3	354.62	3	15920.47	1	629.9	28.2	1	282	7	11	39	0	4.66	-0.13	0.462911979	0	FALSE	Mesenchymal	NON G-CIMP	NA	5.75	TRUE
649	TCGA-06-0649-01B-01R-0677-04	81177742	0.12	0.0002	2240.20437365011	29.71	Absent	1	13.09	1	2767.52	1	1354.8	23.66	1	31	0	0	41	0	0.32	0.43	0.051576362	0	TRUE	Neural	NON G-CIMP	NA	2.1	TRUE
654	TCGA-12-0654-01B-01R-0677-04	81177741	0.04	0.0002	453.765293316122	5.65	Absent	1	5.65	1	453.1	1	249.95	4.32	1	NA	NA	NA	NA	NA	0.62	-0.01	0.771169082	0	NA	Mesenchymal	NON G-CIMP	NA	7.59	TRUE
657	TCGA-12-0657-01A-01R-0677-04	81177765	0.68	0.0017	17349.5480672691	26.52	Absent	1	98.82	2	23104.04	1	39.28	22.27	1	NA	NA	NA	NA	NA	3.84	-0.01	0.317155772	0	TRUE	Classical	NON G-CIMP	NA	0.1	TRUE
662	TCGA-12-0662-01A-01R-0677-04	81177783	0.46	0.0084	10928.5274453694	67.12	Absent	1	39.2	1	10665.51	1	269.89	20.1	1	NA	NA	NA	NA	NA	NA	NA	0.137526138	0	FALSE	NA	NON G-CIMP	NA	38.17	TRUE
686	TCGA-06-0686-01A-01R-0677-04	81177743	0.02	0	424.050059041835	16.96	Absent	1	8.98	1	655.53	1	2978.31	24.95	1	12	0	0	5	0	0.64	0	0.059940572	0	FALSE	Proneural	NON G-CIMP	NA	9.37	FALSE
692	TCGA-12-0692-01A-01R-0677-04	81177758	0.16	0.0003	3076.43364520958	19.7	Absent	1	36.77	1	3734.12	1	2717.92	40.84	1	20	0	0	67	0	0.42	1.03	0.464720604	0	FALSE	Classical	NON G-CIMP	NA	3.65	TRUE
703	TCGA-12-0703-01A-02R-0677-04	81177767	NA	NA	1440.75887028848	25.91	Absent	1	27.15	1	1707.29	1	558.97	28.4	1	NA	NA	NA	NA	NA	0.43	-0.02	NA	0	NA	Classical	NON G-CIMP	NA	20.35	TRUE
742	TCGA-15-0742-01A-01R-0677-04	81177719	1.88	0.0016	33924.1768046709	26.18	Absent	1	215.05	2	42431.5	1	1172.01	22.59	1	148	0	0	98	1	4.4	0.03	0.187225433	0	TRUE	Classical	NON G-CIMP	NA	13.74	TRUE
743	TCGA-06-0743-01A-01R-0677-04	81177735	1.63	0.0019	50449.829456278	46.91	Absent	1	407.83	2	63066.39	1	3779.64	86.48	3	248	0	0	28	0	4.44	0.98	0.354661874	0	TRUE	Classical	NON G-CIMP	NA	22.29	FALSE
744	TCGA-06-0744-01A-01R-0677-04	81177784	2.88	0.0617	124717.269553777	512.17	<1%	2	546.87	2	144399.34	1	985.97	29.03	1	834	1	0	100	1	6.79	0.14	0.636332453	0	FALSE	Classical	NON G-CIMP	NA	19.53	FALSE
747	TCGA-06-0747-01A-01R-0677-04	81177733	0.92	0.0026	26017.7043010753	51.15	Absent	1	206.61	2	35485.62	1	560.15	26.07	1	1733	0	0	383	0	5.4	0	0.487107958	0	TRUE	Classical	NON G-CIMP	NA	2.7	TRUE
749	TCGA-06-0749-01A-01R-0677-04	81177718	0.12	0.0002	2624.33955843293	14.52	Absent	1	19.93	1	3311.28	1	433.72	18.58	1	18	0	0	272	0	0.35	0	0.553138632	0	TRUE	Neural	NON G-CIMP	NA	2.66	TRUE
750	TCGA-06-0750-01A-01R-0677-04	81177782	1.41	0.1325	24063.9681099929	453.72	1-10%	3	108.87	2	13587.6	2	543.61	20.61	1	192	0	0	17	0	4.37	0.01	0.368374186	0	TRUE	Mesenchymal	NON G-CIMP	NA	0.92	TRUE
769	TCGA-12-0769-01A-01R-0677-04	81177709	1.32	0.0012	23427.715370019	38.17	Absent	1	200.12	2	32820.7	1	208.08	36.84	1	NA	NA	NA	NA	NA	NA	NA	0.348359916	0	NA	NA	NON G-CIMP	NA	15.06	TRUE
772	TCGA-12-0772-01A-01R-0677-04	81177790	0.06	0.0001	612.99370908347	17.46	Absent	1	14.32	1	721.13	1	290.93	26.86	1	NA	NA	NA	NA	NA	0.43	-0.04	0.342060044	0	NA	Mesenchymal	NON G-CIMP	NA	53.85	TRUE
775	TCGA-12-0775-01A-01R-0677-04	81177760	0.05	0.0003	700.246455798407	24.1	Absent	1	9.88	1	992.56	1	306.64	24.99	1	NA	NA	NA	NA	NA	0.25	0.01	0.222972089	0	FALSE	Mesenchymal	NON G-CIMP	NA	7.63	TRUE
776	TCGA-12-0776-01A-01R-0677-04	81177791	NA	NA	2074.70214909618	7.38	Absent	1	27.33	1	2353.16	1	2994.66	12.17	1	NA	NA	NA	NA	NA	0.89	0.02	NA	0	NA	Mesenchymal	NON G-CIMP	NA	9.73	TRUE
780	TCGA-12-0780-01A-01R-0677-04	81177720	0.15	0	2246.00273722628	17.19	Absent	1	15.99	1	2300.57	1	785.91	15.99	1	NA	NA	NA	NA	NA	0.86	-0.01	0.759682799	0	NA	Classical	NON G-CIMP	NA	14.86	TRUE
787	TCGA-14-0787-01A-01R-0677-04	81177785	0.78	1.0918	28094.0556353401	15765.07	>10%	4	141.92	2	31327.44	1	1139.91	8.33	1	115	27	0	2	0	5	0.01	0.007896547	0	FALSE	Classical	NON G-CIMP	CL_4	2.24	TRUE
789	TCGA-14-0789-01A-01R-0677-04	81177787	0.35	0.2516	5354.59556109265	1256.43	>10%	4	466.78	3	6778.87	1	1950.01	13.37	1	468	98	40	113	0	2.91	-0.01	0.014950647	0	TRUE	Mesenchymal	NON G-CIMP	CL_2	11.24	TRUE
812	TCGA-14-0812-01B-01R-0678-04	81178265	0.16	0.0004	4650.71347087378	14.58	Absent	1	32.24	1	4021.79	1	6191.11	34.96	1	NA	NA	NA	NA	NA	0.52	1.81	0.505129243	0	FALSE	Neural	NON G-CIMP	CL_3	3.25	TRUE
817	TCGA-14-0817-01A-01R-0677-04	81177738	NA	NA	18886.4474406362	63.21	Absent	1	83.95	1	11290.38	2	5436.24	83.95	1	182	0	0	173	3	4.64	1.53	NA	0	FALSE	Neural	NON G-CIMP	CL_4	5.39	TRUE
818	TCGA-12-0818-01A-01R-0678-04	81178255	0.13	0.0004	2865.02246806569	22.9	Absent	1	28.06	1	3889.27	1	1404.02	29.34	1	NA	NA	NA	NA	NA	NA	NA	0.595617607	0	FALSE	Proneural	G-CIMP	G-CIMP	91.73	TRUE
819	TCGA-12-0819-01A-01R-0677-04	81177763	5.82	0.0736	129311.127006346	353.62	<1%	2	845.38	2	146470.67	1	418.45	34.21	1	NA	NA	NA	NA	NA	NA	NA	0.221625012	0	FALSE	Classical	NON G-CIMP	CL_3	24.76	TRUE
821	TCGA-12-0821-01A-01R-0677-04	81177716	0.09	0.0028	2393.63264730973	25.56	Absent	1	24.27	1	2254.03	1	284.08	15.22	1	18	0	0	8	0	0.52	0.01	0.277790951	0	FALSE	Neural	NON G-CIMP	CL_6	10.62	TRUE
827	TCGA-12-0827-01A-01R-0677-04	81177786	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0.06	-0.26	NA	NA	NA	NA	NA	NA	NA	NA
828	TCGA-12-0828-01A-01R-0677-04	81177764	0.37	0.5461	8683.17531725163	4175.96	>10%	4	62.84	1	7116.5	1	2222.47	31.31	1	NA	NA	NA	NA	NA	5.01	1.21	0.008842914	0	FALSE	Neural	NON G-CIMP	CL_2	8.91	TRUE
829	TCGA-12-0829-01A-01R-0677-04	81176236	NA	NA	7879.79686457638	23.61	Absent	1	61.29	1	10141.51	1	1397.03	28.32	1	NA	NA	NA	NA	NA	2.3	0.18	NA	0	TRUE	Mesenchymal	NON G-CIMP	CL_2	20.58	TRUE
846	TCGA-16-0846-01A-01R-0677-04	81177761	0.06	0.0001	1074.21094546381	10.04	Absent	1	8.54	1	1274.68	1	14964.15	37.18	2	6	0	0	6	0	0.34	3.4	0.327313901	0	FALSE	Proneural	NON G-CIMP	CL_3	3.91	TRUE
849	TCGA-16-0849-01A-01R-0677-04	81177715	0.15	0.0002	3218.15471381429	12.67	Absent	1	25.23	1	4015.04	1	699.17	6.38	1	NA	NA	NA	NA	NA	0.01	-0.01	0.615328997	0	TRUE	Proneural	G-CIMP	G-CIMP	26.07	FALSE
850	TCGA-16-0850-01A-01R-0677-04	81177740	0.02	0.0001	763.788765490444	12.18	Absent	1	12.18	1	1013.5	1	12805.66	68.09	2	NA	NA	NA	NA	NA	0.07	0.05	0.605034247	0	FALSE	Proneural	G-CIMP	G-CIMP	16.37	TRUE
865	TCGA-14-0865-01B-01R-0678-04	81178264	0.01	0.0001	168.95955141129	9.69	Absent	1	13.55	1	190.2	1	77550.05	628.44	2	NA	NA	NA	NA	NA	0.05	3.17	0.524227219	0	FALSE	Proneural	NON G-CIMP	CL_6	16.5	TRUE
866	TCGA-14-0866-01B-01R-0678-04	81176242	1.38	0.2374	50621.4240052185	2706.61	1-10%	3	159.19	2	44323.77	1	1503.79	5.82	1	NA	NA	NA	NA	NA	5.48	-0.03	0.128576407	0	NA	Neural	NON G-CIMP	CL_3	26.33	TRUE
875	TCGA-06-0875-01A-01R-0678-04	81178278	0.01	0.0002	184.255174946581	12.06	Absent	1	2.58	1	192.15	1	1310.64	15.22	1	NA	NA	NA	NA	NA	0.82	0.48	0.44215719	0	FALSE	Proneural	NON G-CIMP	CL_6	9.17	FALSE
882	TCGA-06-0882-01A-01R-0677-04	81177712	0.06	0.0002	1213.4967605281	11.89	Absent	1	17.33	1	1320.82	1	355.65	3.33	1	30	0	0	18	1	0.36	0.02	0.573747652	0	FALSE	Neural	NON G-CIMP	CL_1	5.42	FALSE
957	TCGA-19-0957-01C-01R-0678-04	81178247	0.05	0.0001	1263.51888992537	15.79	Absent	1	14.92	1	1442.76	1	46802.08	151.53	2	NA	NA	NA	NA	NA	0.52	4.04	0.68239983	0	FALSE	Proneural	NON G-CIMP	CL_3	21.86	TRUE
960	TCGA-19-0960-01A-02R-0678-04	81178236	0.01	0	78.3677202748383	9.69	Absent	1	4.48	1	110.53	1	37446.11	208.76	2	NA	NA	NA	NA	NA	-0.63	2.5	0.473041778	0	NA	Proneural	NON G-CIMP	CL_6	8.61	FALSE
963	TCGA-19-0963-01B-01R-0678-04	81178249	0.08	0.0003	1631.55682782019	14.82	Absent	1	8.77	1	2158.38	1	2174.79	24.32	1	NA	NA	NA	NA	NA	0.4	2.3	0.161980453	0	NA	Neural	NON G-CIMP	CL_2	14.27	TRUE
964	TCGA-19-0964-01A-01R-0678-04	81178202	1.55	0.0013	45187.639253638	19.52	Absent	1	276.97	2	19732.24	2	1816.13	13.97	1	NA	NA	NA	NA	NA	2.83	0.02	0.756538804	0	NA	Classical	NON G-CIMP	CL_4	3.39	FALSE
1037	TCGA-14-1037-01A-01R-0678-04	81178270	0.68	0.2259	8260.99370257167	834.87	>10%	4	82.31	2	9288.7	1	1420.27	6.85	1	NA	NA	NA	NA	NA	2.35	0.01	0.037968487	1	FALSE	Mesenchymal	NON G-CIMP	CL_2	19.3	TRUE
1045	TCGA-16-1045-01B-01R-0678-04	81178274	1.24	0.0045	16372.8504185407	28.52	Absent	1	133.31	2	26750.4	1	473.09	22.17	1	746	0	0	152	3	3.75	0.01	0.551372815	0	TRUE	Mesenchymal	NON G-CIMP	CL_1	29	TRUE
1047	TCGA-16-1047-01B-01R-0678-04	81178273	1.59	0.0013	31137.3596316636	15.48	Absent	1	133	2	43417.49	1	264.15	13.77	1	NA	NA	NA	NA	NA	5.23	-0.01	0.532462611	0	NA	Classical	NON G-CIMP	CL_3	4.57	TRUE
1060	TCGA-16-1060-01A-01R-0678-04	81178253	1.23	0.0212	15329.4274343352	72.72	<1%	2	89.27	2	22027.44	1	1591.37	23.85	1	NA	NA	NA	NA	NA	4.6	0	0.044346827	0	NA	Mesenchymal	NON G-CIMP	CL_2	9.14	TRUE
1062	TCGA-16-1062-01A-01R-0678-04	81178229	0.76	1.18	19695.5147409754	17771.85	>10%	4	98.86	2	1392.26	3	1305.35	10.58	1	NA	NA	NA	NA	NA	5.56	-0.02	2.85e-13	1	NA	Classical	NON G-CIMP	CL_4	21.24	TRUE
1063	TCGA-16-1063-01B-01R-0678-04	81178232	3.18	0.0155	46985.383126195	58.52	<1%	2	223.04	2	73095.25	1	1002.86	19.73	1	NA	NA	NA	NA	NA	4.79	0.03	0.502481364	0	NA	Neural	NON G-CIMP	CL_3	13.97	TRUE
1084	TCGA-06-1084-01A-01R-0678-04	81178234	0.02	0	529.541600457637	32.01	Absent	1	10.44	1	522.8	1	235.61	32.01	1	NA	NA	NA	NA	NA	0.27	0	0.75599479	0	FALSE	Mesenchymal	NON G-CIMP	CL_2	7.43	FALSE
1087	TCGA-06-1087-01A-02R-0678-04	81178206	0.01	0	274.302203567681	7.53	Absent	1	5.02	1	335.59	1	564.18	5.52	1	NA	NA	NA	NA	NA	0.44	-0.67	0.817031929	0	FALSE	Proneural	NON G-CIMP	CL_6	4.04	TRUE
1095	TCGA-12-1095-01A-01R-0678-04	81178230	0.02	0.0001	195.755707126949	5.67	Absent	1	11.91	1	247.17	1	638.24	4.12	1	NA	NA	NA	NA	NA	0.33	-0.01	0.818171089	0	NA	Mesenchymal	NON G-CIMP	CL_1	15.85	TRUE
1097	TCGA-12-1097-01B-01R-0678-04	81178205	0.43	0.4763	8924.17185157421	3803.14	>10%	4	125.9	3	10299.17	1	1517.83	18.99	1	NA	NA	NA	NA	NA	3.22	0.78	0.000000284	1	NA	Neural	NON G-CIMP	CL_3	14.53	TRUE
1385	TCGA-19-1385-01A-02R-0678-04	81178198	0.04	0.0003	859.639555515458	6.61	Absent	1	11.7	1	982.96	1	614.53	5.08	1	NA	NA	NA	NA	NA	0.2	0.02	0.303178576	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	10.75	TRUE
1386	TCGA-19-1386-01A-01R-0678-04	81178201	4.1	0.6073	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6.08	0	0.047204488	NA	NA	NA	NA	NA	NA	NA
1387	TCGA-19-1387-01A-01R-0678-04	81178222	0.11	0.0002	1984.31423888003	5.5	Absent	1	22.77	1	2291.35	1	10098.49	43.04	2	NA	NA	NA	NA	NA	0.71	2.65	0.401048785	0	FALSE	Proneural	NON G-CIMP	CL_4	5.95	FALSE
1388	TCGA-19-1388-01A-01R-0678-04	81178263	2.23	0.0031	66827.9554103428	19.1	Absent	1	260.07	2	90773.13	1	14949.59	76.25	2	NA	NA	NA	NA	NA	4.37	0.11	0.437833446	0	FALSE	Mesenchymal	NON G-CIMP	CL_6	12.95	TRUE
1389	TCGA-19-1389-01A-01R-0678-04	81178248	0.07	0.0002	786.385750939578	11.6	Absent	1	13.95	1	1160.24	1	278.3	16.9	1	NA	NA	NA	NA	NA	0.24	0	0.613658904	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	4.64	TRUE
1396	TCGA-14-1396-01A-01R-0678-04	81178277	0.04	0.0001	446.083935907109	5.66	Absent	1	9.92	1	484.5	1	212.09	4.49	1	NA	NA	NA	NA	NA	0.69	-0.01	0.450755289	0	FALSE	Mesenchymal	NON G-CIMP	CL_4	1.12	TRUE
1447	TCGA-15-1447-01A-01R-0678-04	81178185	0.14	0.0003	3970.74378161889	5.99	Absent	1	32.03	2	4637.91	1	271.97	4.88	1	NA	NA	NA	NA	NA	0.33	-0.06	0.786695867	0	NA	Proneural	NON G-CIMP	CL_6	53.19	FALSE
1449	TCGA-15-1449-01A-01R-0678-04	81178209	0.12	0.0003	3811.27009434427	2.75	Absent	1	21.4	1	4612.02	1	323.86	5.08	1	NA	NA	NA	NA	NA	0.91	-0.08	0.434428213	0	NA	Proneural	NON G-CIMP	CL_1	13.28	TRUE
1451	TCGA-14-1451-01A-01R-0678-04	81178211	0.06	0.0002	1169.90866445916	12.9	Absent	1	15.45	1	1407.09	1	2964.5	12.9	1	NA	NA	NA	NA	NA	0.29	-0.01	0.607927892	0	FALSE	Proneural	NON G-CIMP	CL_1	23.11	TRUE
1452	TCGA-14-1452-01A-01R-0678-04	81178228	0.66	0.0137	9362.16548013245	70.49	<1%	2	62.15	2	14653.82	1	317.89	13.05	1	NA	NA	NA	NA	NA	4.33	-0.03	0.650741632	0	NA	Mesenchymal	NON G-CIMP	CL_3	7.1	TRUE
1453	TCGA-14-1453-01A-01R-0678-04	81178226	3.31	0.0116	56283.3860148891	45.93	Absent	1	295.75	2	77242.81	1	3259.4	29.76	1	NA	NA	NA	NA	NA	4.74	-0.19	0.225269855	0	FALSE	Classical	NON G-CIMP	CL_4	1.15	TRUE
1455	TCGA-14-1455-01A-01R-0678-04	81178241	0.02	0.0001	332.317895418999	7.93	Absent	1	16.25	1	376.68	1	66964.64	9976.58	4	NA	NA	NA	NA	NA	0.46	3.82	0.598923556	0	TRUE	Proneural	NON G-CIMP	CL_6	0.92	TRUE
1458	TCGA-14-1458-01A-01R-0678-04	81178217	0.1	0.0002	3684.45801800763	9	Absent	1	18.34	1	4096.7	1	4306.15	14.34	1	NA	NA	NA	NA	NA	0.46	-0.13	0.299993146	0	FALSE	Proneural	G-CIMP	G-CIMP	6.64	TRUE
1460	TCGA-16-1460-01A-01R-0678-04	81178238	0.08	0.0001	1665.93379222329	8.04	Absent	1	16.49	1	2056.11	1	1296.89	12.27	1	NA	NA	NA	NA	NA	0.01	-0.03	0.556223517	0	FALSE	Proneural	G-CIMP	G-CIMP	6.41	FALSE
1600	TCGA-12-1600-01A-01R-0678-04	81178197	1.65	0.0064	47827.5841486093	36.71	<1%	2	201.22	2	53672.16	1	1623.15	17.58	1	NA	NA	NA	NA	NA	4.53	0	0.118103137	0	TRUE	Classical	NON G-CIMP	CL_4	14.73	TRUE
1601	TCGA-12-1601-01A-01R-0678-04	81178221	0.66	0.0036	14291.2552083333	17.27	Absent	1	64.26	1	14251.49	1	295.59	2.81	1	NA	NA	NA	NA	NA	3.52	-0.02	0.803854048	0	FALSE	NA	NON G-CIMP	CL_2	NA	NA
1745	TCGA-28-1745-01B-01R-0678-04	81178220	0.09	0.0003	1588.9906859039	4.97	Absent	1	24.85	1	1567.13	1	943.06	8.95	1	NA	NA	NA	NA	NA	0.2	0.01	0.747953795	NA	FALSE	Mesenchymal	NON G-CIMP	CL_2	11.31	FALSE
1746	TCGA-28-1746-01A-01R-0678-04	81178200	0.25	0.0006	8194.04662872956	11.11	Absent	1	46.1	2	9466.9	1	1794.81	8.78	1	NA	NA	NA	NA	NA	0.79	-0.03	0.527741525	0	FALSE	Proneural	NON G-CIMP	CL_3	0.2	FALSE
1749	TCGA-28-1749-01A-01R-0678-04	81176260	2.36	0.7964	56791.5276905634	8812.41	>10%	4	376.36	2	69758.52	1	1755.15	15.78	1	NA	NA	NA	NA	NA	4.96	-0.03	0.135475816	0	FALSE	Classical	NON G-CIMP	CL_3	9.17	FALSE
1751	TCGA-28-1751-01A-02R-0678-04	81178262	0.02	0.0001	322.455094251052	10.96	Absent	1	12.29	1	388.87	1	432.04	4.32	1	NA	NA	NA	NA	NA	0.21	-0.02	0.074615458	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	7.59	FALSE
1752	TCGA-28-1752-01A-01R-0678-04	81178271	0.42	0.0004	9651.28099497803	18.28	Absent	1	88.75	2	10808.04	1	986.24	10.31	1	NA	NA	NA	NA	NA	2.75	0	0.685795996	0	TRUE	Neural	NON G-CIMP	CL_2	8.45	FALSE
1755	TCGA-28-1755-01A-01R-0678-04	81178246	0.19	0.2905	4220.73503823346	3395.86	>10%	4	23.39	1	4663.51	1	1823.39	3.89	1	NA	NA	NA	NA	NA	3.63	0	0.028236537	1	FALSE	Classical	NON G-CIMP	CL_6	1.51	TRUE
1757	TCGA-28-1757-01A-02R-0678-04	81178213	0.98	0.0023	18528.7555643717	12.93	Absent	1	161.42	2	22306.03	1	126.95	4.98	1	NA	NA	NA	NA	NA	5.1	-0.02	0.365496471	0	TRUE	Classical	NON G-CIMP	CL_2	0.13	FALSE
1786	TCGA-19-1786-01A-01R-0678-04	81178188	1.39	1.0035	40678.4806597189	11486.88	>10%	4	348.8	2	49240.9	1	1068.31	9.37	1	NA	NA	NA	NA	NA	5.33	-0.01	0.006002031	0	FALSE	Classical	NON G-CIMP	CL_3	7.13	FALSE
1788	TCGA-19-1788-01A-01R-0678-04	81178245	0.12	0.0004	4691.63929584121	4.97	Absent	1	44.64	2	5015.63	1	4119.03	15.55	1	NA	NA	NA	NA	NA	0.03	-0.04	0.627607559	NA	FALSE	Proneural	G-CIMP	G-CIMP	3.65	TRUE
1789	TCGA-19-1789-01A-01R-0678-04	81178237	3.97	0.003	101727.122081236	38.54	Absent	1	267.63	2	119623.97	1	604.16	30.77	1	NA	NA	NA	NA	NA	3.96	-0.01	0.34377318	0	FALSE	Classical	NON G-CIMP	CL_4	3.06	TRUE
1791	TCGA-19-1791-01A-01R-0678-04	81178239	0.72	0.0118	22597.2312176166	124.24	<1%	2	106.12	2	34535.1	1	156.86	30	1	NA	NA	NA	NA	NA	3.75	-0.01	0.838026309	0	FALSE	Neural	NON G-CIMP	CL_6	0.13	FALSE
1794	TCGA-14-1794-01A-01R-0678-04	81178196	0.34	0.001	11848.8065768557	9.65	Absent	1	55.47	2	11732.08	1	3537.53	10.51	1	NA	NA	NA	NA	NA	3.74	-0.04	0.475051524	0	FALSE	Proneural	NON G-CIMP	CL_2	0.99	TRUE
1795	TCGA-14-1795-01A-01R-0678-04	81178193	0.02	0	304.625	1	Absent	1	15.46	1	246.79	1	651.62	1	1	NA	NA	NA	NA	NA	0.38	-0.02	0.410166079	0	FALSE	Proneural	NON G-CIMP	CL_3	1.94	TRUE
1801	TCGA-06-1801-01A-02R-0678-04	81178261	0.05	0.0002	1049.75960251606	6.09	Absent	1	17.72	1	1337.57	1	5014.41	51.88	3	NA	NA	NA	NA	NA	0.43	0.01	0.86530367	0	FALSE	Proneural	NON G-CIMP	CL_1	8.65	FALSE
1805	TCGA-06-1805-01A-01R-0678-04	81178191	0.05	0.0003	857.543041455161	21.31	Absent	1	10.56	1	1257.74	1	1366.45	28.48	1	NA	NA	NA	NA	NA	0	0.03	0.516953712	0	FALSE	Proneural	G-CIMP	G-CIMP	4.18	FALSE
1821	TCGA-14-1821-01A-01R-0678-04	81178199	0.02	0.0001	508.198623244262	7.98	Absent	1	12.86	1	668.66	1	38095.31	251.46	2	NA	NA	NA	NA	NA	0.05	0.68	0.561343485	0	FALSE	Proneural	G-CIMP	G-CIMP	17.75	TRUE
1823	TCGA-14-1823-01A-01R-0678-04	81178240	0.53	0.0007	10004.74375	26.65	Absent	1	53.47	1	9263.21	1	39.48	23.15	1	52	0	0	125	4	4.27	-0.08	0.32374584	0	TRUE	Mesenchymal	NON G-CIMP	CL_3	17.82	TRUE
1825	TCGA-14-1825-01A-01R-0678-04	81178190	0.08	0.0003	1862.65140290038	21.48	Absent	1	24.15	1	2246.38	1	2882.06	57.98	3	16	0	0	50	0	0.25	0.46	0.743573065	0	FALSE	Proneural	NON G-CIMP	CL_6	7.63	TRUE
1829	TCGA-14-1829-01A-01R-0678-04	81178192	0.41	0.0022	25250.5727163462	31.69	Absent	1	179.01	2	16212.04	2	5218.49	31.69	1	58	0	0	4	0	5.5	1.81	0.113333509	0	TRUE	Neural	NON G-CIMP	CL_2	7.13	FALSE
1830	TCGA-27-1830-01A-01R-0678-04	81178269	0.04	0.0001	737.064273049645	10.56	Absent	1	9.19	1	992.43	1	6378.4	32.41	2	14	0	0	7	0	0.38	2.43	0.460255862	0	FALSE	Proneural	NON G-CIMP	CL_2	5.06	TRUE
1832	TCGA-27-1832-01A-01R-0678-04	81178212	0.22	0.0005	2725.94998019017	10.79	Absent	1	16.81	1	2873.49	1	321.67	7.77	1	12	0	0	7	0	0.93	-0.02	0.586079815	0	FALSE	Mesenchymal	NON G-CIMP	CL_1	9.86	TRUE
1834	TCGA-27-1834-01A-01R-0678-04	81176243	0.09	0.0003	1822.03611417034	13.44	Absent	1	22.77	1	2201.48	1	8471.69	70.98	2	36	0	0	10	0	0.44	2.1	0.739154662	0	FALSE	Neural	NON G-CIMP	CL_3	40.5	TRUE
