ID 			T1-0703	T1-0829	T1-0414	T1-0195	T1-0211	T1-0210	T1-0347	T1-0269	T1-0620	T1-0769	T1-0157	T1-0068
Positive	POS_A(128)	ERCC_00117.1	10035	12982	15115	12418	8321	8020	9940	9078	10557	7362	9330	8338
Positive	POS_B(32)	ERCC_00112.1	2793	3798	4311	3816	2388	2341	2728	2567	3056	2168	2710	2321
Positive	POS_C(8)	ERCC_00002.1	669	936	1110	877	573	594	717	618	730	497	672	641
Positive	POS_D(2)	ERCC_00092.1	234	299	310	299	203	200	224	214	264	174	211	197
Positive	POS_E(0.5)	ERCC_00035.1	29	52	31	29	25	20	29	23	42	78	29	29
Positive	POS_F(0.125)	ERCC_00034.1	33	54	64	34	36	18	28	42	39	28	29	32
Negative	NEG_A(0)	ERCC_00096.1	6	15	10	6	6	5	5	4	6	4	5	3
Negative	NEG_B(0)	ERCC_00041.1	9	8	12	10	9	6	21	13	20	19	10	14
Negative	NEG_C(0)	ERCC_00019.1	11	17	16	5	8	2	7	10	16	7	9	7
Negative	NEG_D(0)	ERCC_00076.1	9	5	9	7	9	2	5	14	5	11	12	18
Negative	NEG_E(0)	ERCC_00098.1	7	8	8	8	0	4	7	4	10	7	1	7
Negative	NEG_F(0)	ERCC_00126.1	10	10	7	12	7	7	8	9	10	9	3	10
Negative	NEG_G(0)	ERCC_00144.1	8	14	11	15	9	8	12	14	12	13	9	15
Negative	NEG_H(0)	ERCC_00154.1	19	32	22	24	8	11	17	19	21	9	8	10
Endogenous	AKR1C3	NM_003739.4	138	315	105	92	39	64	155	86	98	126	103	160
Endogenous	AKT3	NM_005465.3	446	543	492	369	252	203	564	811	337	240	353	411
Endogenous	AQP1	NM_198098.1	547	690	209	238	61	225	1305	648	269	48	3088	709
Endogenous	ARC	NM_015193.3	437	120	409	100	444	197	317	1705	558	333	490	252
Endogenous	AVIL	NM_006576.2	154	198	43	48	58	42	89	111	64	71	865	63
Endogenous	B2M	NM_004048.2	28764	72164	20665	38660	24144	31707	42359	37916	40386	43440	25218	74594
Endogenous	B4GALT1	NM_001497.3	411	1060	152	202	410	250	590	266	733	527	259	716
Endogenous	BEX1	NM_018476.3	1960	1522	3946	1807	1334	1157	1792	1284	280	340	1671	1382
Endogenous	BMP2	NM_001200.2	268	112	158	17	117	39	263	135	124	185	40	128
Endogenous	CAB39L	NM_001031724.1	488	478	104	286	173	203	499	1103	329	282	424	623
Endogenous	CAPZA2	NM_006136.2	845	704	578	853	516	577	791	1242	919	804	714	854
Endogenous	CCL2	NM_002982.3	86	1355	143	169	1256	2279	959	146	601	439	1007	2668
Endogenous	CCND2	NM_001759.2	3565	5408	2741	317	3414	1655	12939	6637	4735	3874	13550	6250
Endogenous	CD163	NM_004244.4	519	11230	366	48	775	862	2946	98	1379	796	324	1526
Endogenous	CD44	NM_000610.3	2126	5537	728	551	1832	2406	5088	1304	3623	3788	1625	5053
Endogenous	CDH4	NM_001794.2	405	157	34	293	311	104	203	1148	563	221	873	422
Endogenous	CDK4	NM_000075.2	554	689	829	572	681	406	883	694	692	836	12526	757
Endogenous	CDK6	NM_001259.5	385	626	118	130	532	611	482	961	368	131	1157	312
Endogenous	CDKN2A	NM_000077.3	16	26	280	93	6	16	12	38	30	203	203	19
Endogenous	CDKN2B	NM_004936.3	35	60	577	233	18	18	62	1034	64	628	252	60
Endogenous	CDKN2C	NM_001262.2	1315	952	1524	2593	935	564	1732	849	1144	1886	1522	1400
Endogenous	CEP170	NM_001042404.1	850	1054	664	642	562	434	1299	1943	1195	707	958	1222
Endogenous	CFI	NM_000204.3	487	638	130	31	539	357	783	116	347	253	325	823
Endogenous	CHI3L1	NM_001276.2	45376	45159	1636	1335	18993	41623	22044	25045	83903	26461	4581	28981
Endogenous	CHIC2	NM_012110.2	93	184	65	107	180	130	488	113	65	61	74	101
Endogenous	CLEC2B	NM_005127.2	357	1001	284	129	237	2525	277	165	210	191	144	453
Endogenous	CLTC	NM_004859.2	1583	1940	1108	928	927	978	2014	1559	2050	1026	1834	1813
Endogenous	COL1A2	NM_000089.3	732	1556	155	29	777	839	818	569	710	2527	372	2323
Endogenous	COL6A3	NM_004369.2	59	274	33	30	313	211	56	29	82	51	71	558
Endogenous	CTDSP2	NM_005730.3	1633	2349	570	541	936	644	1783	1745	1696	1149	7966	1559
Endogenous	CYB5R2	NM_016229.3	53	325	90	21	30	89	86	51	76	40	18	111
Endogenous	CYP27B1	NM_000785.3	29	32	14	14	15	17	15	36	27	21	346	33
Endogenous	DARC	NM_002036.2	18	217	45	21	12	17	18	13	22	11	47	89
Endogenous	DDX1	NM_004939.1	1141	1071	838	714	893	648	1227	1656	1206	834	957	1269
Endogenous	DENND2A	NM_015689.3	951	663	183	196	713	406	755	1728	1074	706	1179	561
Endogenous	DLL3	NM_203486.2	32	47	657	171	104	76	760	257	119	61	876	173
Endogenous	DNM3	NM_015569.3	120	280	675	301	45	86	524	86	248	88	100	152
Endogenous	DPYD	NM_000110.3	486	2212	202	267	223	334	1102	171	341	886	536	1337
Endogenous	DYRK3	NM_003582.2	100	367	101	78	95	97	222	193	174	129	66	304
Endogenous	DYRK4	NM_003845.1	25	60	23	45	19	21	52	29	50	12	27	40
Endogenous	E2F4	NM_001950.3	230	310	122	172	139	140	229	311	214	139	185	269
Endogenous	EDNRB	NM_000115.1	4797	1018	782	1073	2027	848	2098	10353	1596	1199	10238	3619
Endogenous	EGFR	NM_005228.3	1156	8364	162	2190	4703	378	313	55590	2282	17648	14184	46976
Endogenous	EGFREX30	MSK_GMB2_006.1	1370	10765	189	2656	6192	468	476	61170	2969	24724	16486	61170
Endogenous	EGFRVII	MSK_GMB2_005.1	21	64	11	31	38	10	16	258	22	150	119	375
Endogenous	EGFRVIII	MSK_GMB2_008.1	20	24	15	24	2958	23	10	55	50	28	28	54
Endogenous	EMP3	NM_001425.2	747	972	283	207	736	645	979	763	772	679	387	1747
Endogenous	ENO1	NM_001428.2	6544	6291	7119	2716	4050	5464	6549	6416	12072	2606	3753	3376
Endogenous	EVI2B	NM_006495.3	297	989	232	377	202	397	708	261	1018	267	273	487
Endogenous	FABP5	NM_001444.1	4712	3203	1793	1781	569	1771	7517	618	12632	1790	5840	7255
Endogenous	FABP7	NM_001446.3	16660	2478	4448	2650	11277	4305	10701	6004	10438	4913	4755	11160
Endogenous	FAF1	NM_007051.2	1046	1162	937	1426	683	738	1132	695	1355	1094	971	1196
Endogenous	FAM119	NM_206914.1	191	197	109	48	114	133	176	230	379	171	1914	213
Endogenous	G0S2	NM_015714.3	315	785	204	96	351	581	81	175	773	88	587	202
Endogenous	GAPDH	NM_002046.3	100403	66362	47477	10896	35811	54265	59185	44923	251702	74278	33923	63446
Endogenous	GATM	NM_001482.2	7208	4019	3182	1113	3709	1979	4995	10521	6332	3473	3267	6928
Endogenous	GEN1	NM_182625.3	111	125	91	75	73	42	126	111	80	83	80	105
Endogenous	GOLT1A	NM_198447.1	11	15	5	11	7	8	7	10	15	16	400	12
Endogenous	GPNMB	NM_001005340.1	507	3259	764	1323	780	1750	1433	322	2416	645	662	1194
Endogenous	GRIA2	NM_001083620.1	717	322	885	905	625	393	986	1099	412	329	1093	144
Endogenous	GRIK1	NM_000830.3	564	95	86	125	171	31	84	941	122	139	98	350
Endogenous	H6PD	NM_004285.3	424	748	112	145	237	196	452	857	326	149	199	213
Endogenous	HGF	NM_000601.4	73	229	147	77	103	89	105	46	119	217	118	114
Endogenous	HIPK3	NM_005734.2	612	1392	270	415	462	591	965	1054	795	536	493	987
Endogenous	HOXA5	NM_019102.2	114	206	177	45	26	176	51	50	214	48	249	49
Endogenous	HP	NM_005143.3	291	536	64	86	430	301	604	82	184	1022	414	1360
Endogenous	HS1BP3	NM_022460.3	256	495	188	104	168	164	341	244	363	318	180	333
Endogenous	IGF2BP3	NM_006547.2	559	128	205	23	792	314	307	242	33	93	326	91
Endogenous	IGFBP2	NM_000597.2	2849	2383	1369	266	1424	4031	1850	2218	8538	1787	1603	1357
Endogenous	IGFBP6	NM_002178.2	676	833	94	115	79	176	226	67	814	278	96	221
Endogenous	IL8	NM_000584.2	484	3337	1558	69	13098	7315	993	402	3209	402	579	3441
Endogenous	KIAA0746	NM_015187.3	340	868	243	140	127	92	593	99	323	313	381	333
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	18	47	32	22	20	29	24	25	54	29	16	27
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	29	28	26	19	19	12	26	19	41	17	13	15
Endogenous	KPNA3	NM_002267.3	699	564	125	492	546	416	721	892	450	313	944	778
Endogenous	KRIT1	NM_004912.3	1197	1289	591	1035	609	555	1016	1883	838	940	973	894
Endogenous	LAPTM4A	NM_014713.4	5767	8626	2371	2588	3489	3796	5604	6713	7558	4634	5172	8952
Endogenous	LGALS3	NM_002306.2	4309	4956	1047	911	2952	5343	3009	2710	12319	1633	914	2825
Endogenous	LOC390940	XM_001129773.1	301	318	39	187	171	144	205	447	194	286	233	462
Endogenous	LTF	NM_002343.2	637	1240	83	6	351	1195	657	2009	719	143	123	36622
Endogenous	MDM2	NM_002392.2	864	1578	611	544	506	622	1168	1374	1732	1214	998	1109
Endogenous	MDM4	NM_002393.3	575	947	432	528	303	3441	336	961	311	438	17385	480
Endogenous	MET	NM_000245.2	234	200	17	25	33	128	93	26	53	231	39	39
Endogenous	MGMT	NM_002412.3	265	263	65	115	92	222	116	107	302	155	303	338
Endogenous	MMP7	NM_002423.3	29	216	80	24	447	108	25	21	101	33	42	285
Endogenous	MYCN	NM_005378.4	22	57	54	311	56	20	75	79	53	126	190	52
Endogenous	NAG	NM_015909.2	583	803	341	373	378	345	647	819	801	496	497	535
Endogenous	NCAM1	NM_000615.5	2604	2401	2113	1063	939	862	5080	4451	3085	2109	3782	3899
Endogenous	NF1	NM_001042492.1	259	1023	614	608	488	294	961	1371	440	647	690	942
Endogenous	NNMT	NM_006169.2	198	3396	101	157	945	493	645	138	414	1132	329	2563
Endogenous	NPTX2	NM_002523.1	1311	647	366	73	52	134	257	249	306	56	2625	160
Endogenous	OLIG2	NM_005806.2	1593	662	1872	642	769	271	4147	3029	1975	491	1104	1050
Endogenous	OMG	NM_002544.3	162	536	1207	431	137	92	1003	440	584	339	504	494
Endogenous	PARK2	NM_004562.2	100	93	44	44	34	25	85	84	93	24	49	65
Endogenous	PDGFA	NM_002607.5	482	187	150	114	420	125	397	1323	443	339	344	280
Endogenous	PDGFRA	NM_006206.3	448	1482	827	1356	3257	493	9512	114	708	156	272	506
Endogenous	PDGFRAD89	MSK_GMB2_001.1	22	29	26	27	48	23	125	14	37	27	17	23
Endogenous	PDGFRADCt	MSK_GMB2_004.1	409	1529	749	1199	3247	516	10338	135	745	161	269	553
Endogenous	PDPN	NM_006474.4	6781	9677	2141	2497	3791	3784	3709	6449	9112	127066	3651	3110
Endogenous	PHF11	NM_001040443.1	521	428	104	313	131	151	354	544	334	210	188	450
Endogenous	PI3	NM_002638.3	13	181	16	15	639	757	43	20	172	29	17	106
Endogenous	PIK3CA	NM_006218.2	866	2240	336	329	712	564	701	1704	1109	915	618	1406
Endogenous	PLA2G2A	NM_000300.2	38	7711	33	22	1345	239	3014	137	70	71	57	667
Endogenous	PLAT	NM_000930.3	590	1475	1241	436	717	1137	1390	565	1636	285	1671	843
Endogenous	POLR2A	NM_000937.2	1500	1499	706	531	580	774	1621	1404	1485	630	907	1182
Endogenous	PRKCZ	NM_002744.4	119	118	166	163	22	18	254	26	144	30	83	62
Endogenous	PROM1	NM_006017.1	110	743	425	27	135	438	646	280	68	197	247	86
Endogenous	PTEN	NM_000314.3	1832	2046	407	791	1069	601	853	1329	1645	1225	654	1589
Endogenous	PTGDS	NM_000954.5	436	3802	1434	1330	45	514	1417	159	297	43	682	315
Endogenous	PTX3	NM_002852.3	154	412	119	112	1357	1114	644	761	483	185	205	1498
Endogenous	RB1	NM_000321.1	978	695	121	166	918	534	850	1678	685	132	860	1097
Endogenous	RDH14	NM_020905.3	273	329	136	142	112	163	250	367	221	195	153	364
Endogenous	REN	NM_000537.3	21	44	29	41	23	22	27	30	30	32	38	30
Endogenous	RERE	NM_001042681.1	380	453	366	326	217	235	467	812	467	113	464	201
Endogenous	RGN	NM_152869.2	232	518	105	208	155	133	314	381	427	271	491	120
Endogenous	RHOB	NM_004040.2	328	517	366	129	306	251	323	395	557	245	288	512
Endogenous	RTN1	NM_206857.1	1624	822	441	496	285	102	856	2690	143	1206	660	668
Endogenous	S100A4	NM_002961.2	283	1085	435	270	507	637	635	406	438	636	378	902
Endogenous	S100A9	NM_002965.2	1004	3215	437	77	862	1655	605	145	755	133	406	426
Endogenous	SAA2	NM_030754.3	25	704	36	5	661	72	56	15	44	54	1707	12583
Endogenous	SAMD9	NM_017654.2	265	337	70	221	133	137	339	239	237	319	138	405
Endogenous	SAMD9L	NM_152703.2	230	490	51	182	158	168	334	548	223	488	218	585
Endogenous	SDCCAG8	NM_006642.2	939	1202	440	625	506	440	952	1910	836	731	741	1027
Endogenous	SDHA	NM_004168.1	453	546	239	393	279	252	403	759	472	424	321	377
Endogenous	SEC61G	NM_001012456.1	2095	5583	1954	1021	30269	1637	1702	1797	2994	44884	18719	2531
Endogenous	SERPINA1	NM_000295.4	128	1234	112	126	344	322	380	134	405	249	280	680
Endogenous	SETDB2	NM_031915.1	114	130	29	105	64	53	129	181	48	66	115	161
Endogenous	SLC4A4	NM_001098484.2	8646	3045	369	586	933	2315	1009	6418	2001	1961	1428	2207
Endogenous	SOCS2	NM_003877.3	270	602	122	411	1658	572	1138	1156	159	3853	547	1628
Endogenous	SOX13	NM_005686.2	392	504	288	209	72	432	200	202	445	154	2217	176
Endogenous	SOX2	NM_003106.2	1975	4022	1794	1431	1249	848	2243	3347	1417	2144	2360	2365
Endogenous	SOX9	NM_000346.2	2920	2824	623	1556	1587	864	3048	4577	2278	2848	2249	2751
Endogenous	SPRY2	NM_005842.2	1906	559	169	457	710	804	278	1788	574	740	1015	547
Endogenous	SPSB1	NM_025106.3	87	270	157	42	59	77	128	147	105	73	41	80
Endogenous	SRPX	NM_006307.2	8990	579	349	70	505	854	1357	1658	1099	2000	666	873
Endogenous	STEAP3	NM_001008410.1	487	1315	69	135	666	555	563	807	426	224	981	928
Endogenous	TAGLN	NM_003186.3	539	4189	1183	73	1899	1178	2005	998	7059	454	849	6568
Endogenous	TBP	NM_003194.3	575	744	427	354	448	359	561	1000	692	653	587	910
Endogenous	TCF12	NM_207037.1	3627	1939	2202	802	1905	1055	3564	4878	2155	1613	1513	2826
Endogenous	TCL1A	NM_021966.1	32	36	24	13	22	20	19	16	52	21	26	21
Endogenous	TIMP1	NM_003254.2	7240	7571	1215	574	4999	6834	2700	3275	10431	2586	2390	7411
Endogenous	TMEM100	NM_018286.2	292	128	515	62	65	263	657	84	1001	149	188	323
Endogenous	TUSC3	NM_006765.2	331	294	187	362	195	64	385	251	685	135	159	252
Endogenous	VEGFA	NM_001025366.1	17388	5365	5615	113	4052	11158	3586	6378	13850	6733	1905	2662
Endogenous	WT1	NM_000378.3	15	19	14	30	7	13	9	10	126	21	9	14
Endogenous	ZNF238	NM_006352.3	65	45	77	47	25	28	47	74	37	23	44	28