ID 			T1-0440	T1-0828	T1-0649	T1-0818	T1-0827	T1-0619	T1-0742	T1-0216	T1-0744	T1-0819	T1-0356	T1-0821
Positive	POS_A(128)	ERCC_00117.1	10229	13696	11372	10267	12432	9429	11696	8753	11038	9362	9343	9271
Positive	POS_B(32)	ERCC_00112.1	2760	3778	3128	2879	3369	2590	3113	2363	3026	2602	2627	2549
Positive	POS_C(8)	ERCC_00002.1	733	964	774	724	894	691	836	564	770	629	615	698
Positive	POS_D(2)	ERCC_00092.1	239	278	229	199	263	216	253	213	253	194	199	218
Positive	POS_E(0.5)	ERCC_00035.1	35	34	39	31	19	31	31	37	29	32	32	30
Positive	POS_F(0.125)	ERCC_00034.1	22	27	25	24	35	37	30	16	37	28	44	29
Negative	NEG_A(0)	ERCC_00096.1	2	6	6	2	7	3	9	4	7	3	10	4
Negative	NEG_B(0)	ERCC_00041.1	8	13	9	8	6	15	17	19	17	7	11	5
Negative	NEG_C(0)	ERCC_00019.1	5	10	5	6	6	8	6	6	17	13	11	4
Negative	NEG_D(0)	ERCC_00076.1	9	11	7	7	4	10	12	8	23	27	22	4
Negative	NEG_E(0)	ERCC_00098.1	3	6	2	3	4	4	7	4	2	5	11	7
Negative	NEG_F(0)	ERCC_00126.1	8	13	2	8	4	10	7	13	11	6	10	7
Negative	NEG_G(0)	ERCC_00144.1	15	8	7	4	3	11	14	9	5	14	15	7
Negative	NEG_H(0)	ERCC_00154.1	11	27	13	10	9	11	25	12	21	12	31	14
Endogenous	AKR1C3	NM_003739.4	79	101	58	342	10	578	78	80	139	167	129	147
Endogenous	AKT3	NM_005465.3	479	326	335	1427	3	876	1178	4070	548	210	218	505
Endogenous	AQP1	NM_198098.1	365	7302	1717	38	2	326	395	720	557	564	85	2578
Endogenous	ARC	NM_015193.3	1197	740	94	614	2	330	3397	342	1298	1774	1134	453
Endogenous	AVIL	NM_006576.2	65	70	126	45	6	127	163	81	164	40	55	58
Endogenous	B2M	NM_004048.2	34362	74311	35839	14098	10	53585	31390	27308	36810	34593	84103	22955
Endogenous	B4GALT1	NM_001497.3	237	444	463	240	1	1213	298	380	177	238	321	174
Endogenous	BEX1	NM_018476.3	4676	2711	2010	1132	1	2677	5016	1848	2259	2307	1143	1564
Endogenous	BMP2	NM_001200.2	359	112	116	1186	2	219	123	151	56	77	99	128
Endogenous	CAB39L	NM_001031724.1	347	623	805	1079	5	448	355	600	373	504	290	712
Endogenous	CAPZA2	NM_006136.2	839	1760	1214	784	0	955	1183	781	1277	797	730	1032
Endogenous	CCL2	NM_002982.3	604	1354	805	110	8	184	339	1366	220	102	327	1176
Endogenous	CCND2	NM_001759.2	4062	3843	1027	3295	4	2315	10789	3093	6490	5879	2826	3640
Endogenous	CD163	NM_004244.4	1252	1898	2207	1320	4	5340	942	394	167	554	1159	698
Endogenous	CD44	NM_000610.3	1604	2618	1974	1025	4	2793	2615	1565	958	425	1336	1169
Endogenous	CDH4	NM_001794.2	452	327	72	11	7	236	900	218	542	373	412	33
Endogenous	CDK4	NM_000075.2	919	869	733	578	2	792	1402	930	1352	543	721	972
Endogenous	CDK6	NM_001259.5	599	350	232	308	3	246	916	242	772	153	544	333
Endogenous	CDKN2A	NM_000077.3	12	14	10	26	2	463	17	16	13	9	15	17
Endogenous	CDKN2B	NM_004936.3	43	28	37	413	2	1184	34	31	27	68	765	34
Endogenous	CDKN2C	NM_001262.2	1343	1330	910	453	5	1734	2573	1044	1935	1573	955	1393
Endogenous	CEP170	NM_001042404.1	1706	733	664	1372	1	1817	2830	14295	1104	720	785	1015
Endogenous	CFI	NM_000204.3	141	707	319	32	2	545	180	182	270	86	160	151
Endogenous	CHI3L1	NM_001276.2	11732	33229	3965	16	3	36317	54609	31177	3341	4204	25461	6273
Endogenous	CHIC2	NM_012110.2	1575	167	149	97	2	92	146	73	113	51	54	77
Endogenous	CLEC2B	NM_005127.2	124	508	512	154	3	611	173	471	265	123	397	1481
Endogenous	CLTC	NM_004859.2	1600	1703	1276	2700	1	2544	2180	1297	1589	1427	933	1871
Endogenous	COL1A2	NM_000089.3	230	446	1874	272	4	5274	713	234	459	219	2089	708
Endogenous	COL6A3	NM_004369.2	55	128	320	32	5	282	71	55	40	22	319	56
Endogenous	CTDSP2	NM_005730.3	973	1053	1356	1331	3	1737	2774	1160	1522	959	1021	1048
Endogenous	CYB5R2	NM_016229.3	64	53	50	11	7	78	124	44	56	58	57	42
Endogenous	CYP27B1	NM_000785.3	18	21	8	14	4	41	54	32	63	14	24	13
Endogenous	DARC	NM_002036.2	74	49	95	53	3	47	19	49	24	20	21	63
Endogenous	DDX1	NM_004939.1	1321	1361	1030	901	4	12130	1931	1071	1390	1111	899	1151
Endogenous	DENND2A	NM_015689.3	494	650	585	138	6	662	2521	815	929	1317	837	872
Endogenous	DLL3	NM_203486.2	648	1053	63	1774	2	182	830	118	860	144	67	272
Endogenous	DNM3	NM_015569.3	397	196	159	1107	1	278	407	94	420	234	45	81
Endogenous	DPYD	NM_000110.3	430	376	1322	258	4	1973	637	596	625	226	542	308
Endogenous	DYRK3	NM_003582.2	140	151	149	88	1	464	282	231	101	60	85	198
Endogenous	DYRK4	NM_003845.1	28	22	34	13	1	40	37	22	42	35	20	25
Endogenous	E2F4	NM_001950.3	220	184	239	169	1	339	377	192	289	149	184	226
Endogenous	EDNRB	NM_000115.1	698	9613	3546	5788	5	2232	2115	6904	8164	5036	2830	4639
Endogenous	EGFR	NM_005228.3	156	7160	1482	2223	2	24002	37718	31607	93445	81778	44521	1851
Endogenous	EGFREX30	MSK_GMB2_006.1	235	5868	1831	3018	4	31262	47177	1879	108192	92630	603	1743
Endogenous	EGFRVII	MSK_GMB2_005.1	7	51	8	21	9	160	238	130	409	534	155	18
Endogenous	EGFRVIII	MSK_GMB2_008.1	22	3443	19	17	10	173	28	33	383	223	34	19
Endogenous	EMP3	NM_001425.2	346	817	496	20	4	1058	1101	626	696	493	651	327
Endogenous	ENO1	NM_001428.2	8669	6543	3368	2628	1	15361	12878	7148	3534	4782	4153	6183
Endogenous	EVI2B	NM_006495.3	509	365	741	218	7	783	257	190	121	386	275	237
Endogenous	FABP5	NM_001444.1	2437	2537	1684	95	8	5392	702	2566	7009	2514	3648	22981
Endogenous	FABP7	NM_001446.3	14507	13372	2550	119	0	1828	9852	4382	16367	5587	11832	2771
Endogenous	FAF1	NM_007051.2	1127	1306	505	1031	3	2055	1699	1015	1592	829	735	1249
Endogenous	FAM119	NM_206914.1	123	171	179	130	3	191	308	121	116	101	150	125
Endogenous	G0S2	NM_015714.3	363	190	195	29	10	811	286	495	55	53	322	199
Endogenous	GAPDH	NM_002046.3	68855	52482	26632	25711	18	59593	83255	59280	31426	36097	37512	49233
Endogenous	GATM	NM_001482.2	3652	3658	1106	2217	9	919	11435	3404	4844	4664	1774	1294
Endogenous	GEN1	NM_182625.3	154	114	62	20	5	186	171	72	221	63	46	124
Endogenous	GOLT1A	NM_198447.1	9	14	13	2	1	28	13	14	3	5	7	7
Endogenous	GPNMB	NM_001005340.1	2071	843	1439	93	1	1550	461	534	445	2651	929	2006
Endogenous	GRIA2	NM_001083620.1	2509	752	433	2362	5	195	853	60	763	825	328	100
Endogenous	GRIK1	NM_000830.3	338	146	91	30	7	52	578	465	302	106	125	83
Endogenous	H6PD	NM_004285.3	208	267	426	260	4	1069	956	437	445	209	275	214
Endogenous	HGF	NM_000601.4	56	119	186	16	8	378	53	38	150	64	69	37
Endogenous	HIPK3	NM_005734.2	510	801	583	1061	2	1015	1100	509	683	393	596	546
Endogenous	HOXA5	NM_019102.2	359	275	177	19	8	97	217	360	52	61	96	234
Endogenous	HP	NM_005143.3	192	3116	70	207	6	3420	312	640	19	252	249	1113
Endogenous	HS1BP3	NM_022460.3	298	394	469	293	1	498	458	267	256	222	194	264
Endogenous	IGF2BP3	NM_006547.2	460	198	221	5	2	102	532	114	309	28	157	393
Endogenous	IGFBP2	NM_000597.2	4585	1866	782	199	7	2304	5414	2617	1970	2227	2652	2134
Endogenous	IGFBP6	NM_002178.2	248	178	169	82	4	220	119	75	82	141	211	63
Endogenous	IL8	NM_000584.2	971	1864	2182	86	18	671	1277	1380	210	134	709	621
Endogenous	KIAA0746	NM_015187.3	166	166	366	31	2	640	270	182	62	101	225	95
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	27	31	8	7	10	34	38	14	19	25	35	21
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	77	38	20	20	14	17	24	13	9	18	24	15
Endogenous	KPNA3	NM_002267.3	454	816	612	865	2	595	572	690	940	619	461	1034
Endogenous	KRIT1	NM_004912.3	1023	1128	1029	2448	4	1611	2014	988	1393	824	760	1048
Endogenous	LAPTM4A	NM_014713.4	4475	6941	8542	5428	5	9992	7551	4273	5348	6592	4821	6485
Endogenous	LGALS3	NM_002306.2	2421	2648	1089	168	8	4859	3403	189	1824	1194	3003	424
Endogenous	LOC390940	XM_001129773.1	224	259	220	6	6	153	327	294	118	109	250	235
Endogenous	LTF	NM_002343.2	40	370	933	9	2	20718	140	6553	65	172	9119	4294
Endogenous	MDM2	NM_002392.2	799	1000	518	708	1	1207	1803	1037	868	681	694	878
Endogenous	MDM4	NM_002393.3	362	368	287	773	19	506	1027	363	826	193	268	2100
Endogenous	MET	NM_000245.2	17	38	306	11	4	423	60	68	43	40	29	22
Endogenous	MGMT	NM_002412.3	109	267	131	240	4	128	441	56	149	233	211	220
Endogenous	MMP7	NM_002423.3	211	67	154	16	11	223	35	28	33	24	36	30
Endogenous	MYCN	NM_005378.4	218	55	79	311	0	690	155	233	228	74	20	128
Endogenous	NAG	NM_015909.2	492	490	535	677	5	5421	1065	505	664	491	356	565
Endogenous	NCAM1	NM_000615.5	5973	2967	2490	12933	3	2204	4175	1790	3461	2374	1405	2804
Endogenous	NF1	NM_001042492.1	803	660	542	1266	2	654	1562	665	908	586	503	688
Endogenous	NNMT	NM_006169.2	648	721	1494	52	1	3309	189	719	82	48	544	3203
Endogenous	NPTX2	NM_002523.1	4413	95	43	34	15	180	204	69	188	1751	2096	1610
Endogenous	OLIG2	NM_005806.2	5477	2682	313	6359	4	739	9112	1860	4463	1899	1456	919
Endogenous	OMG	NM_002544.3	1558	779	846	1007	10	162	865	280	263	656	223	377
Endogenous	PARK2	NM_004562.2	71	90	93	82	3	74	69	43	55	81	30	32
Endogenous	PDGFA	NM_002607.5	152	324	103	109	4	144	2233	308	280	602	445	103
Endogenous	PDGFRA	NM_006206.3	38120	1832	896	1089	3	260	1302	52	738	264	198	219
Endogenous	PDGFRAD89	MSK_GMB2_001.1	48743	25	15	22	5	8	24	10	21	21	17	11
Endogenous	PDGFRADCt	MSK_GMB2_004.1	36192	1569	796	1080	5	313	1164	53	670	288	173	230
Endogenous	PDPN	NM_006474.4	1190	2729	1782	22	3	4828	6014	1862	3046	2905	4042	2542
Endogenous	PHF11	NM_001040443.1	206	542	457	84	4	397	225	387	210	226	409	466
Endogenous	PI3	NM_002638.3	32	432	68	7	8	300	134	41	14	18	23	15
Endogenous	PIK3CA	NM_006218.2	840	803	477	1179	6	1661	1509	838	1918	1627	1056	653
Endogenous	PLA2G2A	NM_000300.2	79	1885	88	16	9	138	143	4174	20	11	1917	260
Endogenous	PLAT	NM_000930.3	2040	843	881	152	5	2191	2492	1033	1377	679	796	801
Endogenous	POLR2A	NM_000937.2	1059	876	851	1096	3	1253	1570	1078	692	893	650	1190
Endogenous	PRKCZ	NM_002744.4	254	72	88	118	3	39	59	38	46	139	42	70
Endogenous	PROM1	NM_006017.1	1245	448	72	129	4	100	334	623	231	177	109	410
Endogenous	PTEN	NM_000314.3	1104	1262	1212	2047	12	937	1813	773	996	1089	984	526
Endogenous	PTGDS	NM_000954.5	1284	1309	341	455	3	332	361	285	368	1967	780	425
Endogenous	PTX3	NM_002852.3	191	679	272	17	11	434	935	238	383	141	205	245
Endogenous	RB1	NM_000321.1	644	952	538	923	0	1047	851	493	923	646	740	1201
Endogenous	RDH14	NM_020905.3	229	247	213	226	2	405	419	253	200	218	223	260
Endogenous	REN	NM_000537.3	14	18	12	6	4	27	25	14	8	10	13	7
Endogenous	RERE	NM_001042681.1	605	340	397	831	3	673	790	300	640	315	225	389
Endogenous	RGN	NM_152869.2	269	354	692	81	3	423	261	660	479	207	214	774
Endogenous	RHOB	NM_004040.2	411	482	372	966	10	756	573	250	286	669	509	493
Endogenous	RTN1	NM_206857.1	1825	398	337	1438	5	488	200	136	562	1273	1566	588
Endogenous	S100A4	NM_002961.2	639	955	1059	47	2	1132	414	926	310	157	624	682
Endogenous	S100A9	NM_002965.2	1290	1236	976	202	4	1905	625	736	321	249	1317	594
Endogenous	SAA2	NM_030754.3	14	4957	16	9	2	400	76	3832	19	11	46	1779
Endogenous	SAMD9	NM_017654.2	201	291	202	77	4	452	583	244	187	64	522	334
Endogenous	SAMD9L	NM_152703.2	128	301	346	80	5	547	463	343	407	163	480	274
Endogenous	SDCCAG8	NM_006642.2	740	989	897	893	6	1409	1404	10431	1057	829	643	729
Endogenous	SDHA	NM_004168.1	495	367	478	1063	2	952	1016	364	549	370	299	317
Endogenous	SEC61G	NM_001012456.1	1918	85651	2008	811	9	66706	49927	16924	135372	87122	44346	2865
Endogenous	SERPINA1	NM_000295.4	326	395	394	44	9	1342	259	306	166	203	239	218
Endogenous	SETDB2	NM_031915.1	69	111	108	137	3	140	103	121	151	177	133	160
Endogenous	SLC4A4	NM_001098484.2	1034	1734	1935	2196	2	1322	2645	767	631	3894	3009	2504
Endogenous	SOCS2	NM_003877.3	1669	1780	225	328	10	483	5893	1534	3082	1759	945	1312
Endogenous	SOX13	NM_005686.2	214	151	185	493	7	316	490	141	249	147	125	316
Endogenous	SOX2	NM_003106.2	1713	1721	1847	4032	2	2164	4081	1987	3292	1603	1627	1601
Endogenous	SOX9	NM_000346.2	1910	1694	1503	2552	1	1877	6242	2425	2999	1714	2086	1721
Endogenous	SPRY2	NM_005842.2	381	609	248	451	4	1056	1389	1145	1375	836	1285	994
Endogenous	SPSB1	NM_025106.3	165	171	60	157	2	422	233	95	54	56	110	72
Endogenous	SRPX	NM_006307.2	586	471	425	706	10	6111	777	471	292	4921	2617	751
Endogenous	STEAP3	NM_001008410.1	316	632	838	14	6	1535	908	842	256	219	492	280
Endogenous	TAGLN	NM_003186.3	2998	8561	762	1078	2	1776	2082	705	1183	370	5707	1871
Endogenous	TBP	NM_003194.3	604	709	341	517	18	999	957	596	1419	1055	715	504
Endogenous	TCF12	NM_207037.1	3580	2693	1660	9749	6	1443	7454	2397	3953	1887	1953	1612
Endogenous	TCL1A	NM_021966.1	29	20	16	15	8	13	23	14	12	22	25	22
Endogenous	TIMP1	NM_003254.2	4288	4485	3679	218	13	14038	5928	2757	1821	2387	6084	2804
Endogenous	TMEM100	NM_018286.2	1197	1092	692	7858	5	719	338	46	67	623	99	321
Endogenous	TUSC3	NM_006765.2	325	174	241	474	16	200	212	1132	182	358	154	282
Endogenous	VEGFA	NM_001025366.1	4840	2319	1188	903	3	6375	8931	6563	2979	639	5616	4963
Endogenous	WT1	NM_000378.3	14	94	5	8	7	10	24	28	15	17	11	6
Endogenous	ZNF238	NM_006352.3	50	32	43	184	4	171	109	165	79	15	31	55