ID 			T1-0743	T1-0618	T1-0194	T1-0338	T1-0644	T1-0325	T1-0219	T1-0747	T1-0346	T1-0392	T1-0772	T1-0132
Positive	POS_A(128)	ERCC_00117.1	9473	12206	11580	11564	11236	10898	10337	9770	11666	12539	11727	10575
Positive	POS_B(32)	ERCC_00112.1	2832	3682	3283	3414	3342	3139	2931	2958	3336	3687	3379	2970
Positive	POS_C(8)	ERCC_00002.1	685	873	844	849	816	789	750	748	813	900	838	722
Positive	POS_D(2)	ERCC_00092.1	202	297	247	274	309	263	222	233	261	271	275	249
Positive	POS_E(0.5)	ERCC_00035.1	28	42	57	40	55	51	21	27	39	34	46	26
Positive	POS_F(0.125)	ERCC_00034.1	38	36	33	38	26	37	31	29	46	48	32	29
Negative	NEG_A(0)	ERCC_00096.1	5	13	4	10	8	6	6	5	7	5	11	5
Negative	NEG_B(0)	ERCC_00041.1	14	8	19	15	15	10	14	24	16	14	13	8
Negative	NEG_C(0)	ERCC_00019.1	8	18	5	12	5	7	10	7	8	9	10	4
Negative	NEG_D(0)	ERCC_00076.1	9	9	4	5	7	5	2	2	4	5	9	5
Negative	NEG_E(0)	ERCC_00098.1	3	17	3	5	3	4	6	5	6	9	9	7
Negative	NEG_F(0)	ERCC_00126.1	8	11	6	9	11	4	6	7	10	4	6	9
Negative	NEG_G(0)	ERCC_00144.1	9	11	16	15	9	8	9	5	14	13	16	16
Negative	NEG_H(0)	ERCC_00154.1	17	13	11	25	13	19	16	15	26	18	13	18
Endogenous	AKR1C3	NM_003739.4	168	205	70	475	87	209	145	52	349	75	70	199
Endogenous	AKT3	NM_005465.3	484	1720	193	1708	323	943	98	472	612	180	456	227
Endogenous	AQP1	NM_198098.1	1654	3453	239	23	218	1990	289	53	23	12	409	930
Endogenous	ARC	NM_015193.3	374	266	191	2164	100	487	92	252	269	9	823	71
Endogenous	AVIL	NM_006576.2	239	287	68	155	24	232	51	29	63	26	164	24
Endogenous	B2M	NM_004048.2	27665	14655	38160	72210	48976	38521	26678	22518	48282	43685	34618	50159
Endogenous	B4GALT1	NM_001497.3	277	242	734	237	2454	550	109	279	1435	344	1000	320
Endogenous	BEX1	NM_018476.3	1016	6174	458	7072	275	2870	667	1228	749	67	956	2026
Endogenous	BMP2	NM_001200.2	163	287	99	279	230	508	42	40	126	36	433	66
Endogenous	CAB39L	NM_001031724.1	798	412	354	416	273	478	192	385	446	128	224	284
Endogenous	CAPZA2	NM_006136.2	741	958	841	1039	1117	1027	723	422	1228	656	752	653
Endogenous	CCL2	NM_002982.3	1238	146	2496	155	2857	1071	1011	91	2330	426	1318	915
Endogenous	CCND2	NM_001759.2	5269	8195	1051	19670	707	6100	402	1908	2665	81	3337	657
Endogenous	CD163	NM_004244.4	339	305	2438	355	1046	2739	47	95	2906	99	3471	1822
Endogenous	CD44	NM_000610.3	1493	1491	2413	594	3724	4940	490	2407	6012	1070	4286	957
Endogenous	CDH4	NM_001794.2	374	178	124	187	44	151	65	390	205	22	136	58
Endogenous	CDK4	NM_000075.2	736	22132	514	2229	1059	1291	610	387	1095	340	765	269
Endogenous	CDK6	NM_001259.5	736	286	214	666	482	423	121	762	529	185	709	106
Endogenous	CDKN2A	NM_000077.3	8	461	22	604	9	12	6	10	27	8	326	19
Endogenous	CDKN2B	NM_004936.3	24	1065	27	1068	33	31	24	10	20	10	1623	35
Endogenous	CDKN2C	NM_001262.2	1539	1562	180	1760	986	1547	594	575	1109	192	1311	303
Endogenous	CEP170	NM_001042404.1	991	2739	616	2942	779	1723	222	551	1176	155	1529	513
Endogenous	CFI	NM_000204.3	208	172	758	147	1085	648	65	176	1611	193	1030	118
Endogenous	CHI3L1	NM_001276.2	6679	762	111994	4898	21996	5908	9390	35684	87441	6275	67871	11764
Endogenous	CHIC2	NM_012110.2	232	100	56	174	79	142	45	32	81	60	120	35
Endogenous	CLEC2B	NM_005127.2	327	121	437	161	677	453	253	50	1685	127	473	262
Endogenous	CLTC	NM_004859.2	1474	1617	1600	2223	1586	2360	663	676	2497	421	1647	1112
Endogenous	COL1A2	NM_000089.3	353	229	1082	408	14893	1430	103	96	5151	175	3483	508
Endogenous	COL6A3	NM_004369.2	61	39	200	68	3301	208	28	13	254	41	455	193
Endogenous	CTDSP2	NM_005730.3	1590	12829	886	2067	870	2424	326	902	2221	365	1709	604
Endogenous	CYB5R2	NM_016229.3	43	28	40	291	245	37	70	10	201	439	54	84
Endogenous	CYP27B1	NM_000785.3	42	307	23	87	22	48	14	21	28	10	45	8
Endogenous	DARC	NM_002036.2	109	40	49	173	38	142	19	14	37	7	31	61
Endogenous	DDX1	NM_004939.1	986	1391	596	2631	1559	1661	489	649	1729	265	925	682
Endogenous	DENND2A	NM_015689.3	1683	689	420	429	655	844	149	521	800	72	634	236
Endogenous	DLL3	NM_203486.2	335	648	79	244	41	775	44	69	371	9	171	109
Endogenous	DNM3	NM_015569.3	181	860	123	1122	149	1395	154	110	273	51	214	285
Endogenous	DPYD	NM_000110.3	355	244	1171	444	1006	1044	218	410	1682	119	2242	540
Endogenous	DYRK3	NM_003582.2	197	162	145	265	154	451	38	60	174	56	355	59
Endogenous	DYRK4	NM_003845.1	25	31	32	73	27	58	18	10	26	8	19	22
Endogenous	E2F4	NM_001950.3	224	149	208	373	249	413	75	141	343	75	345	112
Endogenous	EDNRB	NM_000115.1	8756	5807	1771	2083	1621	1327	1355	3099	6454	26	569	1204
Endogenous	EGFR	NM_005228.3	31869	3201	695	59	279	2062	2344	10376	245	128	781	5146
Endogenous	EGFREX30	MSK_GMB2_006.1	39839	4544	839	84	363	2689	1868	14152	305	168	919	5530
Endogenous	EGFRVII	MSK_GMB2_005.1	257	44	8	18	13	21	28	82	10	8	17	38
Endogenous	EGFRVIII	MSK_GMB2_008.1	29	22	24	25	20	13	821	20	28	27	21	20
Endogenous	EMP3	NM_001425.2	722	148	478	118	901	430	256	630	643	238	425	185
Endogenous	ENO1	NM_001428.2	1659	7996	4180	5427	8304	6642	2327	1162	7680	2097	6890	2147
Endogenous	EVI2B	NM_006495.3	260	254	679	215	407	465	100	126	907	85	429	609
Endogenous	FABP5	NM_001444.1	5143	1020	2564	15848	4159	3308	1935	259	2163	819	2177	4323
Endogenous	FABP7	NM_001446.3	5087	2069	6173	21306	7036	1384	4894	3946	31963	261	6272	1209
Endogenous	FAF1	NM_007051.2	983	1527	273	2405	1023	1516	789	676	1041	346	1272	612
Endogenous	FAM119	NM_206914.1	171	5433	84	126	109	286	67	67	270	38	232	66
Endogenous	G0S2	NM_015714.3	238	351	531	259	361	265	82	66	342	45	1272	470
Endogenous	GAPDH	NM_002046.3	33173	90844	50819	95557	67795	59870	37170	20147	94719	26169	89179	29348
Endogenous	GATM	NM_001482.2	4935	1416	1376	2075	1062	6323	1210	2745	2263	54	2027	3438
Endogenous	GEN1	NM_182625.3	106	150	50	473	106	273	29	53	113	40	120	27
Endogenous	GOLT1A	NM_198447.1	10	12	17	10	15	9	3	3	20	11	15	7
Endogenous	GPNMB	NM_001005340.1	472	1190	1448	814	2448	1821	612	233	1979	290	1176	2390
Endogenous	GRIA2	NM_001083620.1	776	1718	308	2232	216	2507	333	107	598	18	497	592
Endogenous	GRIK1	NM_000830.3	169	202	77	33	54	157	77	937	79	15	208	88
Endogenous	H6PD	NM_004285.3	201	276	278	180	465	917	46	164	845	86	477	112
Endogenous	HGF	NM_000601.4	65	222	208	142	810	141	25	155	641	51	171	72
Endogenous	HIPK3	NM_005734.2	750	626	639	747	502	1466	193	515	1173	246	850	546
Endogenous	HOXA5	NM_019102.2	309	827	41	28	32	757	36	31	118	16	206	95
Endogenous	HP	NM_005143.3	484	72	99	37	45	338	62	12	128	6	2042	505
Endogenous	HS1BP3	NM_022460.3	244	262	245	301	336	798	79	126	651	109	375	215
Endogenous	IGF2BP3	NM_006547.2	182	592	77	189	372	214	79	50	226	38	230	20
Endogenous	IGFBP2	NM_000597.2	855	3193	1541	4945	2869	1950	717	862	5164	1278	3252	256
Endogenous	IGFBP6	NM_002178.2	97	77	1325	195	2052	336	107	70	2813	9098	519	196
Endogenous	IL8	NM_000584.2	3796	913	4005	200	3359	2717	856	163	2484	312	1398	7001
Endogenous	KIAA0746	NM_015187.3	289	448	511	530	585	530	58	328	1501	127	311	112
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	15	17	29	43	33	17	24	17	38	27	26	17
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	21	32	19	48	30	13	11	7	26	15	20	8
Endogenous	KPNA3	NM_002267.3	686	1376	560	1544	679	650	326	421	828	192	406	418
Endogenous	KRIT1	NM_004912.3	1741	1561	657	1935	797	2887	318	835	1077	238	1492	425
Endogenous	LAPTM4A	NM_014713.4	5208	4688	5177	7390	11207	5183	2887	3273	14467	2986	6087	4580
Endogenous	LGALS3	NM_002306.2	1347	606	1861	6025	3795	1464	2170	1152	4431	2545	3635	1003
Endogenous	LOC390940	XM_001129773.1	371	282	114	364	168	184	183	138	266	78	100	87
Endogenous	LTF	NM_002343.2	288	14	390	126	66	1872	66	99	335	12	12046	3872
Endogenous	MDM2	NM_002392.2	909	779	1735	1314	822	1284	537	445	1241	386	56469	671
Endogenous	MDM4	NM_002393.3	759	638	203	961	146	887	211	302	411	87	499	120
Endogenous	MET	NM_000245.2	83	200	194	143	789	200	29	126	431	935	495	85
Endogenous	MGMT	NM_002412.3	88	212	244	208	390	369	174	41	233	195	99	280
Endogenous	MMP7	NM_002423.3	837	65	90	72	115	33	10	9	70	971	217	53
Endogenous	MYCN	NM_005378.4	56	266	18	544	11	76	22	68	60	24	38	26
Endogenous	NAG	NM_015909.2	529	740	352	660	501	1053	222	265	757	111	581	301
Endogenous	NCAM1	NM_000615.5	2939	9328	1132	6615	388	7838	1180	1455	1886	15	2756	2151
Endogenous	NF1	NM_001042492.1	1102	1094	247	1330	394	2112	278	622	530	142	790	413
Endogenous	NNMT	NM_006169.2	1708	94	777	356	732	423	408	88	194	416	1541	796
Endogenous	NPTX2	NM_002523.1	53	160	237	13033	5555	377	60	127	93	52	306	252
Endogenous	OLIG2	NM_005806.2	2271	3027	698	6607	221	4247	399	586	1161	10	933	576
Endogenous	OMG	NM_002544.3	356	983	316	1415	191	1260	514	92	513	18	220	718
Endogenous	PARK2	NM_004562.2	59	111	153	65	25	76	20	23	83	21	38	38
Endogenous	PDGFA	NM_002607.5	173	80	114	165	285	430	60	150	157	32	488	60
Endogenous	PDGFRA	NM_006206.3	2387	177	176	10455	199	1137	162	223	613	19	370	150
Endogenous	PDGFRAD89	MSK_GMB2_001.1	54	20	12	196	22	22	18	10	38	13	33	17
Endogenous	PDGFRADCt	MSK_GMB2_004.1	2561	169	182	10783	174	1248	121	250	749	8	422	196
Endogenous	PDPN	NM_006474.4	4610	2698	4967	895	4567	4333	1887	1727	5846	741	7839	1816
Endogenous	PHF11	NM_001040443.1	545	222	422	493	392	455	205	284	388	201	317	314
Endogenous	PI3	NM_002638.3	61	18	603	37	39	328	18	15	36	18	90	783
Endogenous	PIK3CA	NM_006218.2	1101	2093	870	1051	832	930	236	635	1812	324	1304	446
Endogenous	PLA2G2A	NM_000300.2	4382	53	443	19	163	33	40	31	29	17	1289	192
Endogenous	PLAT	NM_000930.3	611	1134	749	2105	1719	705	300	1179	3430	396	832	218
Endogenous	POLR2A	NM_000937.2	892	1198	794	2896	1001	1471	401	532	1629	261	1252	601
Endogenous	PRKCZ	NM_002744.4	44	344	38	220	27	199	82	25	139	14	24	171
Endogenous	PROM1	NM_006017.1	93	913	130	2396	55	957	110	63	276	17	356	28
Endogenous	PTEN	NM_000314.3	741	1284	949	2808	573	1701	216	426	1735	313	1696	775
Endogenous	PTGDS	NM_000954.5	444	784	179	331	941	1241	1217	158	2208	17	132	2152
Endogenous	PTX3	NM_002852.3	337	170	1167	145	422	790	145	1594	1489	60	1212	665
Endogenous	RB1	NM_000321.1	979	933	682	678	678	892	183	709	1156	214	218	478
Endogenous	RDH14	NM_020905.3	236	252	198	445	297	429	80	137	466	68	292	156
Endogenous	REN	NM_000537.3	14	12	26	14	19	15	9	22	35	15	30	11
Endogenous	RERE	NM_001042681.1	304	998	223	1219	177	1289	136	138	346	46	537	166
Endogenous	RGN	NM_152869.2	789	349	151	237	112	1359	232	177	294	101	281	316
Endogenous	RHOB	NM_004040.2	270	555	241	199	152	701	150	247	773	68	771	278
Endogenous	RTN1	NM_206857.1	1118	997	420	1251	365	1222	199	725	824	68	1606	575
Endogenous	S100A4	NM_002961.2	654	172	1378	268	10471	628	715	165	2163	1803	1223	752
Endogenous	S100A9	NM_002965.2	321	234	1191	184	1189	677	543	78	812	308	2148	2812
Endogenous	SAA2	NM_030754.3	925	10	153	19	14	383	11	21	43	8	2967	784
Endogenous	SAMD9	NM_017654.2	225	116	216	409	380	640	101	82	498	221	314	118
Endogenous	SAMD9L	NM_152703.2	530	139	251	68	318	625	105	306	593	78	497	159
Endogenous	SDCCAG8	NM_006642.2	1012	782	517	953	625	1981	393	495	1118	125	1092	451
Endogenous	SDHA	NM_004168.1	511	979	222	742	362	754	120	348	504	127	925	232
Endogenous	SEC61G	NM_001012456.1	29133	2504	2329	2054	4114	2377	12051	50975	2563	1506	2324	1044
Endogenous	SERPINA1	NM_000295.4	248	160	886	154	525	469	63	86	1031	113	528	450
Endogenous	SETDB2	NM_031915.1	172	170	71	238	107	103	45	101	127	37	86	92
Endogenous	SLC4A4	NM_001098484.2	2546	1113	2840	375	1680	1113	1709	1778	10713	37	1517	582
Endogenous	SOCS2	NM_003877.3	395	358	374	566	282	285	806	636	386	98	347	142
Endogenous	SOX13	NM_005686.2	156	560	127	436	245	388	45	173	428	149	266	65
Endogenous	SOX2	NM_003106.2	3269	5124	1025	3065	1471	3808	677	1843	2194	197	2961	568
Endogenous	SOX9	NM_000346.2	2904	1585	990	2098	954	2397	417	1865	1795	225	2325	410
Endogenous	SPRY2	NM_005842.2	828	362	905	3089	1080	326	247	696	1737	449	984	177
Endogenous	SPSB1	NM_025106.3	54	101	161	62	70	185	18	35	142	20	317	46
Endogenous	SRPX	NM_006307.2	721	539	728	1429	7739	981	232	265	3756	2077	6895	331
Endogenous	STEAP3	NM_001008410.1	278	444	582	186	1215	636	67	386	2208	475	1855	321
Endogenous	TAGLN	NM_003186.3	556	647	1166	1204	1157	961	722	438	1034	57	3496	945
Endogenous	TBP	NM_003194.3	748	660	467	1019	481	551	289	471	689	215	611	302
Endogenous	TCF12	NM_207037.1	2558	1886	1293	3094	1578	5263	819	1582	2733	215	2155	870
Endogenous	TCL1A	NM_021966.1	17	19	32	35	25	19	15	14	24	13	24	21
Endogenous	TIMP1	NM_003254.2	2126	1334	17882	9338	22405	3454	1835	4037	12631	27578	7219	5344
Endogenous	TMEM100	NM_018286.2	169	1109	152	542	453	799	153	29	381	38	291	198
Endogenous	TUSC3	NM_006765.2	143	903	225	4175	1065	191	525	435	224	45	207	409
Endogenous	VEGFA	NM_001025366.1	1976	17939	3092	2972	3093	10597	1701	867	8169	298	16775	799
Endogenous	WT1	NM_000378.3	7	19	29	11	20	17	6	9	36	18	42	10
Endogenous	ZNF238	NM_006352.3	82	246	33	213	30	224	21	40	44	11	89	17