ID 			T1-0439	T1-0451	T1-0339	T1-0177	T1-0517	T1-0514	T1-0155	T1-0156	T1-0412	T1-0692	T1-1805	T1-0430
Positive	POS_A(128)	ERCC_00117.1	11039	14824	10070	9364	8038	7745	7847	7405	9939	10326	8931	8944
Positive	POS_B(32)	ERCC_00112.1	3054	4153	2858	2815	2350	2261	2262	2214	2933	2925	2540	2695
Positive	POS_C(8)	ERCC_00002.1	691	958	647	613	564	509	521	500	659	680	601	614
Positive	POS_D(2)	ERCC_00092.1	238	291	231	226	161	196	160	194	296	253	179	200
Positive	POS_E(0.5)	ERCC_00035.1	30	49	40	30	23	28	32	23	61	41	39	26
Positive	POS_F(0.125)	ERCC_00034.1	46	58	37	34	25	23	24	42	39	43	28	21
Negative	NEG_A(0)	ERCC_00096.1	7	8	6	8	9	0	3	4	12	5	5	7
Negative	NEG_B(0)	ERCC_00041.1	12	18	11	7	8	19	20	15	26	22	11	9
Negative	NEG_C(0)	ERCC_00019.1	5	10	11	11	9	9	12	6	8	7	11	7
Negative	NEG_D(0)	ERCC_00076.1	5	9	6	11	6	2	7	5	8	6	14	13
Negative	NEG_E(0)	ERCC_00098.1	17	6	6	13	3	7	6	6	7	9	10	6
Negative	NEG_F(0)	ERCC_00126.1	10	21	6	7	6	5	8	6	19	7	10	9
Negative	NEG_G(0)	ERCC_00144.1	9	20	14	11	15	5	11	7	20	25	6	12
Negative	NEG_H(0)	ERCC_00154.1	14	29	20	8	13	12	24	7	29	32	13	18
Endogenous	AKR1C3	NM_003739.4	83	192	119	77	183	52	90	106	91	75	213	50
Endogenous	AKT3	NM_005465.3	237	368	877	1237	471	518	532	296	357	774	893	301
Endogenous	AQP1	NM_198098.1	2593	1067	99	454	965	256	709	1259	2806	1986	2827	244
Endogenous	ARC	NM_015193.3	135	969	2198	198	61	293	101	68	628	1428	159	665
Endogenous	AVIL	NM_006576.2	37	39	349	963	63	48	138	58	211	277	3152	72
Endogenous	B2M	NM_004048.2	9150	59177	45358	24857	50562	24480	37667	18669	71694	60346	52579	32032
Endogenous	B4GALT1	NM_001497.3	199	459	132	465	178	302	752	218	590	1103	528	257
Endogenous	BEX1	NM_018476.3	1451	2654	5343	4155	487	1300	1674	999	371	1477	1689	1396
Endogenous	BMP2	NM_001200.2	159	97	215	111	131	67	104	73	141	237	153	97
Endogenous	CAB39L	NM_001031724.1	359	764	391	346	180	263	255	218	428	955	274	152
Endogenous	CAPZA2	NM_006136.2	364	1026	720	672	558	390	654	472	1505	1119	544	522
Endogenous	CCL2	NM_002982.3	258	1629	84	356	202	215	352	750	11184	1894	357	447
Endogenous	CCND2	NM_001759.2	3224	2179	4908	7576	2670	1278	2890	1794	2906	9896	919	3754
Endogenous	CD163	NM_004244.4	495	1110	41	1765	321	282	1670	824	1735	2017	609	197
Endogenous	CD44	NM_000610.3	961	1636	202	1207	1169	2383	2470	999	5197	4239	488	1404
Endogenous	CDH4	NM_001794.2	48	169	192	89	20	173	164	76	243	105	78	254
Endogenous	CDK4	NM_000075.2	204	767	1139	25956	2155	511	653	563	1208	1150	7547	852
Endogenous	CDK6	NM_001259.5	64	477	697	194	446	523	1177	218	505	1672	195	361
Endogenous	CDKN2A	NM_000077.3	8	39	200	169	20	14	11	5	42	16	248	12
Endogenous	CDKN2B	NM_004936.3	48	46	382	184	33	18	35	15	28	55	709	37
Endogenous	CDKN2C	NM_001262.2	268	2375	2543	3359	2043	1369	558	612	850	2012	2014	1339
Endogenous	CEP170	NM_001042404.1	433	955	1644	1885	1259	515	1418	594	891	2141	1467	671
Endogenous	CFI	NM_000204.3	60	307	65	340	126	150	1003	163	502	1350	276	257
Endogenous	CHI3L1	NM_001276.2	881	52007	526	5737	6591	34272	30601	8676	138504	8419	233	10193
Endogenous	CHIC2	NM_012110.2	32	75	869	986	178	84	189	155	113	345	98	72
Endogenous	CLEC2B	NM_005127.2	153	285	1126	162	83	160	709	213	1984	2389	461	191
Endogenous	CLTC	NM_004859.2	773	1288	1301	1007	1933	988	1355	802	2087	2390	1397	883
Endogenous	COL1A2	NM_000089.3	98	220	313	1571	446	452	24658	310	2142	21523	2387	352
Endogenous	COL6A3	NM_004369.2	43	77	41	245	99	74	7633	118	227	6188	496	50
Endogenous	CTDSP2	NM_005730.3	459	1151	1719	7275	881	823	1662	598	2295	2457	10809	827
Endogenous	CYB5R2	NM_016229.3	33	141	32	48	20	44	82	22	98	62	43	70
Endogenous	CYP27B1	NM_000785.3	1	26	64	810	12	22	47	20	65	35	112	29
Endogenous	DARC	NM_002036.2	38	37	140	171	72	9	26	54	69	124	90	12
Endogenous	DDX1	NM_004939.1	504	1244	1999	1250	2392	969	1084	500	1454	2269	1200	873
Endogenous	DENND2A	NM_015689.3	219	894	542	227	385	615	556	328	1432	2366	291	505
Endogenous	DLL3	NM_203486.2	196	405	174	968	416	51	57	287	199	418	726	665
Endogenous	DNM3	NM_015569.3	185	183	1520	861	558	71	89	199	101	204	918	151
Endogenous	DPYD	NM_000110.3	236	589	161	604	106	116	801	339	786	812	625	712
Endogenous	DYRK3	NM_003582.2	77	187	131	128	616	151	170	111	271	528	204	77
Endogenous	DYRK4	NM_003845.1	18	42	58	51	12	12	30	17	52	20	67	29
Endogenous	E2F4	NM_001950.3	78	200	186	204	229	156	259	84	311	318	180	152
Endogenous	EDNRB	NM_000115.1	1994	3194	857	478	4846	2181	1897	2247	1768	2659	6277	3009
Endogenous	EGFR	NM_005228.3	2036	8602	205	132	255	8083	4633	1064	9147	3783	717	26585
Endogenous	EGFREX30	MSK_GMB2_006.1	2766	12662	248	184	372	12024	3674	1541	12432	4592	1052	26837
Endogenous	EGFRVII	MSK_GMB2_005.1	36	93	7	12	10	73	27	10	80	44	8	168
Endogenous	EGFRVIII	MSK_GMB2_008.1	14	684	11	11	17	14	28	343	2980	23	17	132
Endogenous	EMP3	NM_001425.2	255	758	105	212	422	787	380	228	997	1091	86	484
Endogenous	ENO1	NM_001428.2	5318	8533	6314	5876	7323	3047	6560	2398	7065	10169	2770	3203
Endogenous	EVI2B	NM_006495.3	252	802	126	331	150	266	370	212	431	451	932	190
Endogenous	FABP5	NM_001444.1	734	1619	463	1435	343	334	6105	1397	20822	1419	1044	4351
Endogenous	FABP7	NM_001446.3	513	3483	4205	1034	418	1570	3523	1251	4447	4144	2224	6780
Endogenous	FAF1	NM_007051.2	345	1362	1429	1490	1218	1071	795	597	1145	1834	1222	853
Endogenous	FAM119	NM_206914.1	54	165	131	3914	176	84	166	92	367	524	1525	73
Endogenous	G0S2	NM_015714.3	127	539	123	187	58	131	340	553	2823	491	73	223
Endogenous	GAPDH	NM_002046.3	38865	31631	44658	46262	62884	38051	53590	22624	72732	69366	22273	44776
Endogenous	GATM	NM_001482.2	1049	3107	2530	625	2942	2934	726	1047	4607	2037	2801	5687
Endogenous	GEN1	NM_182625.3	29	67	410	173	177	43	97	65	153	225	130	116
Endogenous	GOLT1A	NM_198447.1	5	20	5	7	4	305	17	4	131	13	9	8
Endogenous	GPNMB	NM_001005340.1	1256	1158	728	4042	7239	1182	1532	561	3098	2829	6052	682
Endogenous	GRIA2	NM_001083620.1	427	491	2488	1048	409	84	603	867	592	499	649	583
Endogenous	GRIK1	NM_000830.3	36	61	51	49	22	90	110	47	43	162	33	174
Endogenous	H6PD	NM_004285.3	186	294	305	316	313	183	355	175	366	844	293	142
Endogenous	HGF	NM_000601.4	50	147	98	158	64	71	132	154	156	459	209	39
Endogenous	HIPK3	NM_005734.2	434	636	706	667	735	675	1392	520	1041	1656	755	401
Endogenous	HOXA5	NM_019102.2	133	175	14	273	143	87	159	109	741	439	134	125
Endogenous	HP	NM_005143.3	39	341	14	2717	117	385	708	303	3069	172	523	120
Endogenous	HS1BP3	NM_022460.3	163	451	273	251	965	203	174	172	433	423	335	162
Endogenous	IGF2BP3	NM_006547.2	47	192	25	676	329	102	183	169	412	885	234	222
Endogenous	IGFBP2	NM_000597.2	663	981	1601	881	1735	2026	5254	525	2596	3017	308	2007
Endogenous	IGFBP6	NM_002178.2	84	108	89	89	81	513	882	79	122	641	149	42
Endogenous	IL8	NM_000584.2	627	671	39	809	104	2111	1773	14867	21842	982	142	1458
Endogenous	KIAA0746	NM_015187.3	95	180	1170	250	75	706	203	157	325	299	112	133
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	14	34	32	17	20	29	30	13	50	32	28	21
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	16	21	74	53	24	16	22	14	31	28	20	12
Endogenous	KPNA3	NM_002267.3	367	699	380	568	558	297	543	264	831	1245	562	311
Endogenous	KRIT1	NM_004912.3	666	997	1517	1557	796	1176	1003	734	1678	2839	1384	933
Endogenous	LAPTM4A	NM_014713.4	2504	6270	5311	2993	12708	5296	9148	2964	6952	10050	5307	3590
Endogenous	LGALS3	NM_002306.2	654	1656	1078	1225	301	9616	2500	483	5042	601	921	3339
Endogenous	LOC390940	XM_001129773.1	62	312	248	173	18	304	134	143	239	228	42	284
Endogenous	LTF	NM_002343.2	138	1112	17	1931	39	45	9314	1277	10925	631	66	173
Endogenous	MDM2	NM_002392.2	480	715	1143	23163	777	539	1042	543	1185	1994	882	740
Endogenous	MDM4	NM_002393.3	317	514	977	655	366	4438	408	335	11089	8117	753	572
Endogenous	MET	NM_000245.2	19	57	31	126	16	50	61	297	78	94	51	30
Endogenous	MGMT	NM_002412.3	76	213	106	384	43	68	132	87	235	399	217	191
Endogenous	MMP7	NM_002423.3	19	174	19	262	169	30	145	207	439	68	33	42
Endogenous	MYCN	NM_005378.4	96	58	399	132	135	92	33	29	65	104	65	81
Endogenous	NAG	NM_015909.2	333	376	820	509	837	388	457	264	700	989	655	400
Endogenous	NCAM1	NM_000615.5	2962	1894	3550	3470	4721	2023	1310	2431	1694	2691	5474	1753
Endogenous	NF1	NM_001042492.1	590	511	1600	778	882	607	800	519	978	1899	1218	548
Endogenous	NNMT	NM_006169.2	119	1963	23	1532	798	88	1801	1545	933	2302	92	68
Endogenous	NPTX2	NM_002523.1	105	330	595	711	297	67	318	91	87	268	3194	35
Endogenous	OLIG2	NM_005806.2	724	1433	8431	1347	1421	1319	196	1555	611	2470	4054	2177
Endogenous	OMG	NM_002544.3	584	628	1294	869	1130	880	79	367	360	201	1036	277
Endogenous	PARK2	NM_004562.2	59	53	45	39	59	51	19	37	67	70	73	23
Endogenous	PDGFA	NM_002607.5	128	352	274	111	54	355	387	40	488	637	77	359
Endogenous	PDGFRA	NM_006206.3	142	148	43392	20921	1225	745	1792	2876	1081	3342	1143	410
Endogenous	PDGFRAD89	MSK_GMB2_001.1	14	28	286	218	28	17	22	40	32	49	23	5
Endogenous	PDGFRADCt	MSK_GMB2_004.1	118	102	43206	22565	1249	900	1997	2985	1120	3749	1210	474
Endogenous	PDPN	NM_006474.4	1681	5912	190	6600	103	2257	1667	1151	10531	5163	662	3250
Endogenous	PHF11	NM_001040443.1	142	661	330	207	69	282	282	157	345	504	358	220
Endogenous	PI3	NM_002638.3	19	102	31	23	32	40	24	1390	821	29	22	25
Endogenous	PIK3CA	NM_006218.2	358	908	702	609	524	853	820	416	1542	1141	599	711
Endogenous	PLA2G2A	NM_000300.2	81	105	13	1349	14	142	744	391	2660	66	16	67
Endogenous	PLAT	NM_000930.3	278	511	4901	795	1715	1887	591	241	875	2287	454	925
Endogenous	POLR2A	NM_000937.2	550	838	1040	785	1361	602	1208	557	1188	1836	1182	519
Endogenous	PRKCZ	NM_002744.4	54	94	230	228	68	107	29	88	44	34	54	10
Endogenous	PROM1	NM_006017.1	103	102	290	318	44	163	2058	137	554	1377	340	276
Endogenous	PTEN	NM_000314.3	280	1157	1996	1158	1546	828	1884	424	1103	788	1415	884
Endogenous	PTGDS	NM_000954.5	1554	1440	598	832	9377	3232	74	479	921	792	1329	147
Endogenous	PTX3	NM_002852.3	86	202	38	175	86	1488	387	543	5379	746	65	262
Endogenous	RB1	NM_000321.1	409	855	610	669	649	801	643	288	979	1631	660	161
Endogenous	RDH14	NM_020905.3	97	209	328	232	420	171	216	103	243	426	239	151
Endogenous	REN	NM_000537.3	12	37	10	11	14	45	27	13	64	19	4	15
Endogenous	RERE	NM_001042681.1	198	350	946	1026	527	142	395	270	339	974	805	241
Endogenous	RGN	NM_152869.2	517	279	221	261	48	343	235	468	312	372	199	272
Endogenous	RHOB	NM_004040.2	465	560	337	357	500	697	339	352	458	846	582	189
Endogenous	RTN1	NM_206857.1	534	839	525	860	123	684	523	246	116	679	1796	99
Endogenous	S100A4	NM_002961.2	463	822	57	470	680	758	628	318	1252	1207	334	440
Endogenous	S100A9	NM_002965.2	284	1359	50	431	197	283	877	413	4154	616	567	337
Endogenous	SAA2	NM_030754.3	10	256	11	149	23	123	88	1161	1379	26	10	24
Endogenous	SAMD9	NM_017654.2	80	374	358	189	229	72	326	116	342	957	385	206
Endogenous	SAMD9L	NM_152703.2	96	395	125	175	136	193	324	166	661	821	418	198
Endogenous	SDCCAG8	NM_006642.2	450	1202	1012	1004	939	644	682	376	956	1506	999	555
Endogenous	SDHA	NM_004168.1	248	497	564	616	326	421	387	247	470	835	654	352
Endogenous	SEC61G	NM_001012456.1	1982	22177	1112	1876	862	23661	9430	2135	3469	3646	928	28706
Endogenous	SERPINA1	NM_000295.4	104	595	27	278	81	141	288	199	847	331	217	174
Endogenous	SETDB2	NM_031915.1	58	141	76	108	65	88	98	47	87	205	123	76
Endogenous	SLC4A4	NM_001098484.2	1282	3425	413	306	1586	6127	1325	1163	3480	4440	1799	1606
Endogenous	SOCS2	NM_003877.3	113	2376	325	347	740	1387	1159	300	2364	443	160	1486
Endogenous	SOX13	NM_005686.2	120	182	590	181	284	2273	376	82	1255	1820	369	202
Endogenous	SOX2	NM_003106.2	1075	1957	3313	1298	2125	1885	456	1013	1565	2821	2582	1851
Endogenous	SOX9	NM_000346.2	645	1477	581	202	1703	2189	1009	575	1880	4646	1333	1891
Endogenous	SPRY2	NM_005842.2	151	1512	588	154	218	1330	2086	127	1035	2100	249	721
Endogenous	SPSB1	NM_025106.3	77	402	111	135	122	44	74	45	460	231	60	52
Endogenous	SRPX	NM_006307.2	321	1190	437	878	1381	887	2544	151	1810	2495	232	384
Endogenous	STEAP3	NM_001008410.1	153	766	125	230	392	208	471	134	1411	758	143	454
Endogenous	TAGLN	NM_003186.3	226	627	993	1859	493	2446	4678	436	1841	4263	880	2499
Endogenous	TBP	NM_003194.3	236	677	631	671	369	564	571	318	927	788	469	583
Endogenous	TCF12	NM_207037.1	594	1828	3610	2932	2933	1275	1618	1956	1447	4030	2890	2576
Endogenous	TCL1A	NM_021966.1	24	26	13	15	21	24	27	9	36	25	24	10
Endogenous	TIMP1	NM_003254.2	973	3417	1910	2031	1509	4747	8336	2003	10165	6993	1518	2667
Endogenous	TMEM100	NM_018286.2	507	242	653	166	1384	28	841	241	214	551	1698	180
Endogenous	TUSC3	NM_006765.2	531	211	1360	569	634	111	1466	99	229	1217	1267	185
Endogenous	VEGFA	NM_001025366.1	7210	969	3342	4229	2462	5346	8324	2917	11878	11712	635	5549
Endogenous	WT1	NM_000378.3	8	20	9	21	14	18	27	11	46	20	15	7
Endogenous	ZNF238	NM_006352.3	43	29	163	606	40	34	66	57	70	172	210	33