ID 			T1-0409	T1-0260	T1-0662	T1-0016	T1-0023	T1-0352	T1-0246	T1-0525	T1-0616	T1-0402	T1-0143	T1-0348
Positive	POS_A(128)	ERCC_00117.1	15238	11322	10538	7993	6476	1933	9680	7923	10415	6759	6732	8465
Positive	POS_B(32)	ERCC_00112.1	3835	3166	3082	2466	1886	594	2751	2334	3123	1827	1924	2335
Positive	POS_C(8)	ERCC_00002.1	904	762	656	553	464	141	644	547	782	444	460	564
Positive	POS_D(2)	ERCC_00092.1	292	214	262	181	154	45	219	194	243	160	160	209
Positive	POS_E(0.5)	ERCC_00035.1	77	30	35	22	32	19	31	36	25	32	36	25
Positive	POS_F(0.125)	ERCC_00034.1	36	33	37	34	13	11	31	28	29	22	26	28
Negative	NEG_A(0)	ERCC_00096.1	6	13	7	4	3	2	8	4	5	5	3	3
Negative	NEG_B(0)	ERCC_00041.1	28	12	18	11	4	7	17	20	12	12	7	12
Negative	NEG_C(0)	ERCC_00019.1	13	13	9	9	1	1	8	9	12	6	17	8
Negative	NEG_D(0)	ERCC_00076.1	12	13	5	18	9	2	20	15	26	16	7	1
Negative	NEG_E(0)	ERCC_00098.1	8	8	7	9	4	1	4	7	8	3	4	8
Negative	NEG_F(0)	ERCC_00126.1	14	10	12	12	5	5	9	9	4	9	9	5
Negative	NEG_G(0)	ERCC_00144.1	17	10	19	9	7	5	15	11	11	12	13	12
Negative	NEG_H(0)	ERCC_00154.1	26	19	22	15	14	2	17	16	13	12	21	26
Endogenous	AKR1C3	NM_003739.4	137	87	95	458	83	49	82	301	68	55	53	69
Endogenous	AKT3	NM_005465.3	395	511	213	723	218	115	279	404	374	273	338	872
Endogenous	AQP1	NM_198098.1	2909	839	404	7361	1238	150	1100	912	910	88	1112	1257
Endogenous	ARC	NM_015193.3	618	3201	215	366	332	212	418	621	443	1139	422	692
Endogenous	AVIL	NM_006576.2	960	173	44	291	131	39	54	136	91	393	216	56
Endogenous	B2M	NM_004048.2	55313	28733	50146	30347	39758	16284	62852	19097	33941	25367	40700	28504
Endogenous	B4GALT1	NM_001497.3	737	164	453	246	248	234	366	395	150	311	728	551
Endogenous	BEX1	NM_018476.3	262	1534	148	1199	902	398	221	864	1745	1213	385	3543
Endogenous	BMP2	NM_001200.2	190	179	93	15	52	149	53	261	54	218	156	104
Endogenous	CAB39L	NM_001031724.1	488	721	294	1290	461	94	354	339	335	111	197	316
Endogenous	CAPZA2	NM_006136.2	980	1085	583	864	305	243	616	634	4522	655	677	739
Endogenous	CCL2	NM_002982.3	10455	247	544	255	212	804	1127	1519	273	344	7843	611
Endogenous	CCND2	NM_001759.2	3050	9269	1294	4102	3337	3390	4892	5622	1847	6001	3422	5114
Endogenous	CD163	NM_004244.4	3404	378	2091	195	842	383	1605	1329	765	179	2365	1272
Endogenous	CD44	NM_000610.3	2910	1209	1258	274	1689	1137	1786	3276	1301	988	2993	2405
Endogenous	CDH4	NM_001794.2	192	128	53	1072	346	74	559	316	66	72	170	253
Endogenous	CDK4	NM_000075.2	1401	815	722	558	311	240	711	692	48412	11123	465	804
Endogenous	CDK6	NM_001259.5	183	1705	678	314	577	99	340	1089	407	2860	458	273
Endogenous	CDKN2A	NM_000077.3	66	7	421	22	20	12	18	19	342	233	20	12
Endogenous	CDKN2B	NM_004936.3	235	31	1054	103	35	179	28	32	347	669	20	36
Endogenous	CDKN2C	NM_001262.2	603	2628	1228	931	916	243	1714	1640	866	1617	644	1548
Endogenous	CEP170	NM_001042404.1	790	1197	481	1029	426	232	646	760	791	661	1028	1576
Endogenous	CFI	NM_000204.3	866	148	353	107	238	333	145	396	235	160	411	186
Endogenous	CHI3L1	NM_001276.2	88452	13241	36630	13056	17889	38242	29658	38605	1980	6618	35129	2742
Endogenous	CHIC2	NM_012110.2	88	105	64	92	47	30	78	73	79	238	290	84
Endogenous	CLEC2B	NM_005127.2	1385	132	287	191	186	116	366	285	188	155	517	296
Endogenous	CLTC	NM_004859.2	1227	1467	1311	1352	686	398	1008	1118	706	956	1253	1782
Endogenous	COL1A2	NM_000089.3	3108	570	1692	233	558	313	311	3297	365	446	1098	1044
Endogenous	COL6A3	NM_004369.2	444	54	219	29	50	34	56	77	32	55	166	100
Endogenous	CTDSP2	NM_005730.3	3832	1501	915	1329	809	362	1144	1868	859	5252	1404	1638
Endogenous	CYB5R2	NM_016229.3	59	108	137	58	72	11	60	146	43	28	61	51
Endogenous	CYP27B1	NM_000785.3	84	36	20	34	20	16	16	30	12	183	40	14
Endogenous	DARC	NM_002036.2	142	15	17	18	11	2	13	24	34	14	127	46
Endogenous	DDX1	NM_004939.1	843	1671	1058	1460	623	360	858	1212	860	1029	891	1474
Endogenous	DENND2A	NM_015689.3	682	1880	553	1606	595	195	477	801	258	701	824	572
Endogenous	DLL3	NM_203486.2	35	661	26	104	46	13	99	178	86	36	57	1994
Endogenous	DNM3	NM_015569.3	93	114	114	103	103	61	95	168	349	61	321	568
Endogenous	DPYD	NM_000110.3	1624	204	1209	220	560	483	1053	893	332	567	695	445
Endogenous	DYRK3	NM_003582.2	259	177	142	109	56	65	82	201	89	145	269	155
Endogenous	DYRK4	NM_003845.1	73	36	19	64	24	7	18	35	26	22	26	35
Endogenous	E2F4	NM_001950.3	209	209	186	191	104	48	144	168	115	161	208	235
Endogenous	EDNRB	NM_000115.1	3664	3516	944	10739	1843	404	1138	2884	1014	2143	841	7108
Endogenous	EGFR	NM_005228.3	12560	26631	7437	26256	11642	5610	24082	16595	1441	16196	13478	263
Endogenous	EGFREX30	MSK_GMB2_006.1	15686	26359	7258	39314	15153	8484	32595	22752	1657	16464	18354	427
Endogenous	EGFRVII	MSK_GMB2_005.1	118	87	26	182	59	36	79	83	17	86	9485	9
Endogenous	EGFRVIII	MSK_GMB2_008.1	54	129	45	18	17	11	81	17	26	27	75	16
Endogenous	EMP3	NM_001425.2	1323	455	436	455	467	478	770	1369	282	543	746	207
Endogenous	ENO1	NM_001428.2	12017	10885	10276	7908	2478	1729	9194	8541	4076	5278	4661	7653
Endogenous	EVI2B	NM_006495.3	819	178	687	459	291	155	331	386	244	196	452	491
Endogenous	FABP5	NM_001444.1	13517	9214	1411	21956	5354	981	6551	12909	5109	2866	7626	2036
Endogenous	FABP7	NM_001446.3	2686	12070	5748	7004	6059	1046	3220	6615	3790	12314	1512	3954
Endogenous	FAF1	NM_007051.2	809	1542	1359	1563	630	237	937	1173	694	923	808	1207
Endogenous	FAM119	NM_206914.1	491	278	83	211	131	32	223	99	90	898	170	207
Endogenous	G0S2	NM_015714.3	2244	138	870	643	178	106	961	541	129	525	1469	484
Endogenous	GAPDH	NM_002046.3	58660	71251	49255	40140	34078	17284	76797	65291	24095	40693	47071	83351
Endogenous	GATM	NM_001482.2	3187	4438	1596	12017	2794	671	1331	1152	767	1474	1490	3209
Endogenous	GEN1	NM_182625.3	109	257	53	195	39	27	61	133	89	98	145	111
Endogenous	GOLT1A	NM_198447.1	12	7	15	13	7	9	15	10	3	10	9	13
Endogenous	GPNMB	NM_001005340.1	2262	370	1245	578	1037	388	1385	1902	491	380	2660	1580
Endogenous	GRIA2	NM_001083620.1	529	2343	81	361	429	134	189	278	713	247	1187	1080
Endogenous	GRIK1	NM_000830.3	91	206	78	221	163	42	34	439	25	353	64	23
Endogenous	H6PD	NM_004285.3	362	497	310	324	105	192	284	451	107	249	455	357
Endogenous	HGF	NM_000601.4	630	53	104	62	87	63	91	113	114	35	76	67
Endogenous	HIPK3	NM_005734.2	804	885	573	855	573	333	848	944	258	503	879	869
Endogenous	HOXA5	NM_019102.2	198	297	87	61	150	35	68	120	145	34	169	748
Endogenous	HP	NM_005143.3	8862	254	344	1415	85	331	632	598	124	26	2947	47
Endogenous	HS1BP3	NM_022460.3	412	145	239	266	191	62	206	201	171	161	304	367
Endogenous	IGF2BP3	NM_006547.2	50	629	339	25	101	26	157	422	214	306	64	357
Endogenous	IGFBP2	NM_000597.2	614	7107	3329	1899	1824	575	2461	2277	1576	2726	1867	2118
Endogenous	IGFBP6	NM_002178.2	406	72	98	132	215	421	332	195	62	84	409	88
Endogenous	IL8	NM_000584.2	5104	6854	775	105	664	289	1154	2076	61	424	11973	1774
Endogenous	KIAA0746	NM_015187.3	222	105	795	95	69	149	151	252	267	219	517	326
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	60	20	33	16	20	6	25	24	33	30	37	17
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	30	19	23	13	17	5	27	25	12	15	17	20
Endogenous	KPNA3	NM_002267.3	696	848	313	782	313	186	371	612	460	309	376	531
Endogenous	KRIT1	NM_004912.3	1017	1815	741	2213	795	424	601	1013	617	763	1288	1276
Endogenous	LAPTM4A	NM_014713.4	4848	6724	6150	7002	2939	1502	7939	5608	2685	3819	5097	4433
Endogenous	LGALS3	NM_002306.2	3710	1897	3154	1000	3375	1433	3937	7611	898	4214	2489	317
Endogenous	LOC390940	XM_001129773.1	207	352	176	229	140	91	308	230	63	247	186	65
Endogenous	LTF	NM_002343.2	186	1977	8552	30	2105	153	1237	4292	3774	91	12201	198
Endogenous	MDM2	NM_002392.2	1479	1086	711	1570	725	434	1109	910	40644	558	1611	1467
Endogenous	MDM4	NM_002393.3	547	886	140	879	340	104	300	439	351	448	11311	458
Endogenous	MET	NM_000245.2	146	34	79	59	45	90	66	114	5966	54	131	45
Endogenous	MGMT	NM_002412.3	175	212	93	69	177	63	196	200	81	68	160	344
Endogenous	MMP7	NM_002423.3	1434	22	3124	19	20	46	24	192	14	25	85	71
Endogenous	MYCN	NM_005378.4	18	115	133	121	70	9	77	93	94	107	90	172
Endogenous	NAG	NM_015909.2	526	989	355	837	334	135	455	515	317	378	533	658
Endogenous	NCAM1	NM_000615.5	1031	3016	625	4443	1088	611	1905	1951	1210	1012	2105	6254
Endogenous	NF1	NM_001042492.1	659	1184	394	1250	524	181	655	660	471	538	927	991
Endogenous	NNMT	NM_006169.2	7053	660	1724	252	242	686	5322	3065	442	1730	818	315
Endogenous	NPTX2	NM_002523.1	96	388	1874	805	6499	259	133	261	727	55	176	164
Endogenous	OLIG2	NM_005806.2	362	3504	340	1947	880	108	1269	2241	1743	1094	1057	4480
Endogenous	OMG	NM_002544.3	74	385	98	321	310	51	168	76	123	137	334	1331
Endogenous	PARK2	NM_004562.2	60	70	40	109	35	17	30	60	20	26	57	127
Endogenous	PDGFA	NM_002607.5	676	1251	392	426	1603	279	391	641	316	543	287	393
Endogenous	PDGFRA	NM_006206.3	72	1459	183	278	101	30	57	351	1162	1893	1074	1011
Endogenous	PDGFRAD89	MSK_GMB2_001.1	32	16	13	12	8	2	12	11	16	30	25	16
Endogenous	PDGFRADCt	MSK_GMB2_004.1	84	1274	163	298	101	19	61	327	1101	1826	1182	1129
Endogenous	PDPN	NM_006474.4	7053	4061	5513	2462	1258	3175	3238	4861	1045	3226	6496	2845
Endogenous	PHF11	NM_001040443.1	530	384	313	607	393	115	425	475	215	205	384	251
Endogenous	PI3	NM_002638.3	647	34	54	10	42	30	80	115	13	14	443	37
Endogenous	PIK3CA	NM_006218.2	1155	1267	762	1210	710	676	929	1254	364	1448	1020	663
Endogenous	PLA2G2A	NM_000300.2	416	764	463	29	52	2821	5221	225	69	290	6375	79
Endogenous	PLAT	NM_000930.3	458	709	680	474	420	158	412	935	3394	611	1246	2789
Endogenous	POLR2A	NM_000937.2	883	1488	961	710	524	268	725	710	612	688	913	1208
Endogenous	PRKCZ	NM_002744.4	27	40	17	70	57	28	30	27	55	17	145	332
Endogenous	PROM1	NM_006017.1	138	792	451	78	214	24	318	196	330	487	277	467
Endogenous	PTEN	NM_000314.3	1544	943	810	1391	685	296	1047	1142	691	1044	1095	1175
Endogenous	PTGDS	NM_000954.5	269	91	57	423	686	260	294	180	133	42	779	931
Endogenous	PTX3	NM_002852.3	877	279	227	267	329	387	192	936	80	475	3816	328
Endogenous	RB1	NM_000321.1	712	1465	867	1065	456	257	588	928	583	385	445	626
Endogenous	RDH14	NM_020905.3	220	276	159	234	123	67	229	170	109	120	192	307
Endogenous	REN	NM_000537.3	53	19	24	22	14	15	16	24	16	17	37	14
Endogenous	RERE	NM_001042681.1	240	704	238	394	183	81	284	316	356	287	377	707
Endogenous	RGN	NM_152869.2	471	163	226	1234	326	126	441	279	173	231	381	216
Endogenous	RHOB	NM_004040.2	1790	489	465	461	351	161	649	392	514	466	336	418
Endogenous	RTN1	NM_206857.1	786	1492	1252	293	734	145	220	1127	203	1610	416	497
Endogenous	S100A4	NM_002961.2	1224	264	1554	560	149	104	285	3583	161	357	474	422
Endogenous	S100A9	NM_002965.2	3622	272	664	213	102	148	1391	1025	111	206	1331	615
Endogenous	SAA2	NM_030754.3	9623	27	110	22	74	89	539	168	9	17	3638	31
Endogenous	SAMD9	NM_017654.2	349	250	283	307	297	104	387	226	221	597	357	183
Endogenous	SAMD9L	NM_152703.2	506	379	189	476	435	192	415	332	142	447	386	134
Endogenous	SDCCAG8	NM_006642.2	931	975	514	1450	511	312	689	569	467	450	910	1034
Endogenous	SDHA	NM_004168.1	454	859	272	1093	345	109	379	477	244	238	505	473
Endogenous	SEC61G	NM_001012456.1	56694	64853	22114	1148	33402	587	22927	58578	10076	26022	1969	2278
Endogenous	SERPINA1	NM_000295.4	702	97	538	220	105	96	371	429	133	138	426	439
Endogenous	SETDB2	NM_031915.1	132	157	50	171	85	20	92	106	58	86	74	86
Endogenous	SLC4A4	NM_001098484.2	895	3478	1842	10471	3198	926	3335	2266	180	1532	1367	1131
Endogenous	SOCS2	NM_003877.3	2447	1762	1563	757	1426	129	868	1333	659	2685	1860	334
Endogenous	SOX13	NM_005686.2	147	232	125	367	213	42	243	160	149	135	1825	271
Endogenous	SOX2	NM_003106.2	997	2424	2020	2134	1558	319	1422	1592	2611	2323	1090	2054
Endogenous	SOX9	NM_000346.2	627	3907	911	2932	1308	292	1737	1733	417	1509	1145	799
Endogenous	SPRY2	NM_005842.2	946	2003	698	2062	842	535	699	1391	422	1285	609	379
Endogenous	SPSB1	NM_025106.3	265	110	124	40	42	79	129	157	67	73	247	178
Endogenous	SRPX	NM_006307.2	1406	2662	2923	93	1091	764	6002	2011	564	2047	995	744
Endogenous	STEAP3	NM_001008410.1	2169	254	793	342	224	250	589	1107	233	331	1114	485
Endogenous	TAGLN	NM_003186.3	3253	2039	1396	728	972	1082	3403	2679	473	1288	1519	1236
Endogenous	TBP	NM_003194.3	815	974	556	844	425	221	691	712	361	625	626	457
Endogenous	TCF12	NM_207037.1	904	5138	1543	3528	1440	400	1268	1848	1731	1382	1403	1336
Endogenous	TCL1A	NM_021966.1	41	21	18	15	21	5	34	22	21	18	28	18
Endogenous	TIMP1	NM_003254.2	8247	4425	6096	2759	2484	1601	5162	5319	1778	3707	6497	3011
Endogenous	TMEM100	NM_018286.2	983	378	291	847	215	98	1197	539	307	116	199	1605
Endogenous	TUSC3	NM_006765.2	244	315	115	320	148	100	144	139	1018	139	117	250
Endogenous	VEGFA	NM_001025366.1	9291	12291	1557	1378	3407	2249	4830	7768	562	1521	11438	6200
Endogenous	WT1	NM_000378.3	74	18	16	27	13	19	17	27	16	5	24	11
Endogenous	ZNF238	NM_006352.3	38	114	8	127	34	20	34	35	51	35	79	127