ID 			T1-0686	T1-0025	T1-1386	T1-0333	T1-0775	T1-0522	T1-0509	T1-0422	T1-0518	T1-0645	T1-0104	T1-0357
Positive	POS_A(128)	ERCC_00117.1	1477	2352	601	8369	9195	9315	8944	9478	9035	10661	10787	7779
Positive	POS_B(32)	ERCC_00112.1	409	641	163	2565	2680	2691	2569	2755	2647	3113	3178	2147
Positive	POS_C(8)	ERCC_00002.1	94	164	36	622	683	666	593	711	691	794	845	535
Positive	POS_D(2)	ERCC_00092.1	22	69	18	214	232	234	211	222	232	303	283	195
Positive	POS_E(0.5)	ERCC_00035.1	10	12	25	27	42	25	37	32	26	41	18	33
Positive	POS_F(0.125)	ERCC_00034.1	2	13	4	34	33	31	23	29	35	37	28	21
Negative	NEG_A(0)	ERCC_00096.1	2	2	1	7	6	7	9	6	4	2	4	3
Negative	NEG_B(0)	ERCC_00041.1	1	1	3	7	18	5	27	10	11	15	10	10
Negative	NEG_C(0)	ERCC_00019.1	0	2	1	6	6	11	5	11	12	7	10	6
Negative	NEG_D(0)	ERCC_00076.1	1	0	1	13	2	11	3	6	6	9	6	7
Negative	NEG_E(0)	ERCC_00098.1	1	0	0	12	10	2	5	2	7	4	5	3
Negative	NEG_F(0)	ERCC_00126.1	0	0	0	10	12	4	22	3	6	12	6	12
Negative	NEG_G(0)	ERCC_00144.1	0	3	0	6	8	21	14	12	11	10	6	11
Negative	NEG_H(0)	ERCC_00154.1	0	7	3	11	15	26	16	18	17	10	6	13
Endogenous	AKR1C3	NM_003739.4	15	32	7	84	277	75	134	79	46	184	142	145
Endogenous	AKT3	NM_005465.3	129	71	41	438	493	569	406	361	209	325	591	623
Endogenous	AQP1	NM_198098.1	104	47	15	2443	70	51	750	472	1510	298	18	1670
Endogenous	ARC	NM_015193.3	53	5	187	1004	842	72	59	1361	328	541	297	2014
Endogenous	AVIL	NM_006576.2	4	27	10	99	92	75	97	42	117	90	21	55
Endogenous	B2M	NM_004048.2	4608	36263	6892	28210	43246	67805	60808	44277	28191	66497	15162	34255
Endogenous	B4GALT1	NM_001497.3	73	1055	54	240	1865	1898	1109	473	371	907	140	582
Endogenous	BEX1	NM_018476.3	949	202	81	1888	1669	500	1070	2624	327	966	4816	2405
Endogenous	BMP2	NM_001200.2	23	67	13	167	197	51	230	102	302	372	215	94
Endogenous	CAB39L	NM_001031724.1	65	44	31	622	382	340	268	438	510	351	162	407
Endogenous	CAPZA2	NM_006136.2	133	165	46	739	1012	910	831	738	753	1032	845	998
Endogenous	CCL2	NM_002982.3	72	466	27	361	2044	1251	4948	323	797	4420	53	1064
Endogenous	CCND2	NM_001759.2	865	104	2194	7569	1454	693	2527	4998	3099	2370	189	5879
Endogenous	CD163	NM_004244.4	120	1042	4	780	9966	4771	2702	608	719	3899	59	614
Endogenous	CD44	NM_000610.3	150	535	38	1530	4216	2528	1672	1955	3297	3431	130	2805
Endogenous	CDH4	NM_001794.2	9	37	77	685	122	112	75	470	274	172	17	814
Endogenous	CDK4	NM_000075.2	6536	149	92	872	594	942	616	979	1228	651	1354	1169
Endogenous	CDK6	NM_001259.5	28	89	56	209	440	555	761	976	315	369	174	433
Endogenous	CDKN2A	NM_000077.3	62	41	2	14	33	16	45	22	10	69	9	14
Endogenous	CDKN2B	NM_004936.3	83	76	4	23	54	54	51	25	21	381	34	75
Endogenous	CDKN2C	NM_001262.2	336	414	254	105	929	657	908	1995	1133	884	4108	1251
Endogenous	CEP170	NM_001042404.1	225	167	112	1172	1174	1695	1267	748	916	1127	725	1578
Endogenous	CFI	NM_000204.3	74	220	28	504	1436	695	1806	319	147	460	20	446
Endogenous	CHI3L1	NM_001276.2	706	6062	1772	25713	160583	13590	93198	29174	49648	91572	122	31069
Endogenous	CHIC2	NM_012110.2	21	39	18	123	95	124	89	87	80	74	71	120
Endogenous	CLEC2B	NM_005127.2	19	236	15	204	706	1152	1055	130	456	503	31	292
Endogenous	CLTC	NM_004859.2	247	218	105	1602	2219	2359	2361	1476	1490	1812	583	2509
Endogenous	COL1A2	NM_000089.3	88	4807	33	379	4767	3770	683	558	602	1806	78	725
Endogenous	COL6A3	NM_004369.2	6	88	0	57	373	1192	52	69	81	326	38	69
Endogenous	CTDSP2	NM_005730.3	119	321	134	1818	1985	1946	1750	1134	2290	1484	404	1730
Endogenous	CYB5R2	NM_016229.3	11	12	5	40	56	129	75	148	34	43	9	53
Endogenous	CYP27B1	NM_000785.3	7	6	6	28	21	15	38	21	43	48	22	27
Endogenous	DARC	NM_002036.2	2	11	3	32	146	35	21	15	12	85	62	18
Endogenous	DDX1	NM_004939.1	331	300	202	1714	1101	1575	1096	1352	1431	1189	1902	1635
Endogenous	DENND2A	NM_015689.3	80	56	224	1227	591	514	843	1392	1657	687	114	1500
Endogenous	DLL3	NM_203486.2	225	6	15	106	69	13	63	220	47	442	362	578
Endogenous	DNM3	NM_015569.3	129	29	2	133	248	50	166	224	20	207	238	253
Endogenous	DPYD	NM_000110.3	35	301	16	468	2714	1072	1164	838	870	748	537	557
Endogenous	DYRK3	NM_003582.2	16	17	2	156	240	125	181	126	119	259	26	183
Endogenous	DYRK4	NM_003845.1	7	10	6	15	48	50	45	20	19	39	62	20
Endogenous	E2F4	NM_001950.3	32	51	20	275	296	530	447	216	248	287	119	299
Endogenous	EDNRB	NM_000115.1	499	91	402	2827	1324	598	824	4132	4323	2081	687	5790
Endogenous	EGFR	NM_005228.3	53	116	4024	36410	787	143	748	20822	8777	11670	347	18946
Endogenous	EGFREX30	MSK_GMB2_006.1	82	136	5769	40791	1116	148	953	29989	12226	14631	343	26402
Endogenous	EGFRVII	MSK_GMB2_005.1	1	2	28	188	10	20	16	204	83	325	6	186
Endogenous	EGFRVIII	MSK_GMB2_008.1	2	9	200	3756	26	27	13	15081	6069	1162	14	12424
Endogenous	EMP3	NM_001425.2	63	138	76	825	809	1455	496	606	963	726	9	777
Endogenous	ENO1	NM_001428.2	1266	1049	183	6935	5024	6010	3456	7342	8430	5391	1912	5976
Endogenous	EVI2B	NM_006495.3	87	358	30	265	867	1199	1031	406	267	649	66	449
Endogenous	FABP5	NM_001444.1	1158	407	65	7608	10068	704	4531	288	14099	6523	215	735
Endogenous	FABP7	NM_001446.3	865	49	972	11938	2582	4438	16312	7850	16958	6209	248	14228
Endogenous	FAF1	NM_007051.2	188	254	72	125	897	907	963	976	1187	933	2440	1463
Endogenous	FAM119	NM_206914.1	4	39	12	162	166	138	151	204	373	191	40	270
Endogenous	G0S2	NM_015714.3	50	39	5	306	661	280	401	205	145	1756	20	198
Endogenous	GAPDH	NM_002046.3	12030	6535	2850	74193	53201	70421	48008	91592	119974	58137	23561	78708
Endogenous	GATM	NM_001482.2	179	102	333	7765	1663	739	1121	8568	6254	2767	608	3944
Endogenous	GEN1	NM_182625.3	39	47	22	120	100	138	127	88	103	91	549	127
Endogenous	GOLT1A	NM_198447.1	2	3	4	8	47	4	36	8	13	13	12	11
Endogenous	GPNMB	NM_001005340.1	217	3061	34	513	865	4940	754	752	1254	2058	272	1078
Endogenous	GRIA2	NM_001083620.1	250	17	79	564	711	122	311	835	980	899	1020	723
Endogenous	GRIK1	NM_000830.3	24	3	87	174	81	27	23	178	381	145	30	398
Endogenous	H6PD	NM_004285.3	55	272	76	707	1140	752	502	467	755	293	83	409
Endogenous	HGF	NM_000601.4	48	152	5	121	403	233	905	84	41	164	29	133
Endogenous	HIPK3	NM_005734.2	64	210	69	1076	1151	1036	1307	685	1025	860	259	842
Endogenous	HOXA5	NM_019102.2	46	8	1	19	221	224	41	208	88	117	145	23
Endogenous	HP	NM_005143.3	7	5	5	158	635	32	608	832	445	3151	24	446
Endogenous	HS1BP3	NM_022460.3	31	60	19	356	379	375	369	290	244	328	195	382
Endogenous	IGF2BP3	NM_006547.2	133	36	24	91	77	423	331	200	244	250	322	203
Endogenous	IGFBP2	NM_000597.2	408	169	241	2089	2956	4107	649	4051	2901	1953	82	3733
Endogenous	IGFBP6	NM_002178.2	26	308	29	145	1975	2259	171	242	191	422	93	268
Endogenous	IL8	NM_000584.2	56	68	16	972	2358	2429	375	928	2394	18628	64	1990
Endogenous	KIAA0746	NM_015187.3	71	330	58	361	964	1224	847	137	102	101	128	457
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	1	11	2	15	19	31	20	26	27	38	14	23
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	2	7	2	9	21	26	17	23	24	22	8	20
Endogenous	KPNA3	NM_002267.3	135	124	42	747	868	979	459	764	799	729	367	730
Endogenous	KRIT1	NM_004912.3	187	280	149	991	1109	1058	1074	880	1311	1028	674	1345
Endogenous	LAPTM4A	NM_014713.4	488	1631	381	5709	8864	9322	6944	7257	6165	5866	8068	6794
Endogenous	LGALS3	NM_002306.2	203	575	204	7005	3513	4316	2994	2823	4645	6868	159	4927
Endogenous	LOC390940	XM_001129773.1	10	90	43	252	132	365	203	354	268	216	15	213
Endogenous	LTF	NM_002343.2	10	81	7	753	677	49	162487	645	625	21689	12	6605
Endogenous	MDM2	NM_002392.2	6443	188	105	1218	1828	1108	1139	1247	923	1157	731	1449
Endogenous	MDM4	NM_002393.3	85	48	55	690	3325	342	313	359	487	399	437	4323
Endogenous	MET	NM_000245.2	12	149	3	61	525	602	197	32	14	77	10	54
Endogenous	MGMT	NM_002412.3	18	137	14	78	215	289	216	65	277	185	231	146
Endogenous	MMP7	NM_002423.3	51	125	0	155	253	175	210	34	16	1436	254	111
Endogenous	MYCN	NM_005378.4	12	2	17	107	32	17	10	66	26	48	188	91
Endogenous	NAG	NM_015909.2	75	77	69	680	592	660	468	597	563	468	381	753
Endogenous	NCAM1	NM_000615.5	545	59	159	3179	1670	1084	1236	3379	3752	1763	2303	3720
Endogenous	NF1	NM_001042492.1	147	136	100	1348	546	721	938	730	1036	732	387	1479
Endogenous	NNMT	NM_006169.2	14	645	22	398	1336	1035	4378	178	1906	2739	36	36
Endogenous	NPTX2	NM_002523.1	79	23	35	366	491	5413	126	159	9050	286	2906	312
Endogenous	OLIG2	NM_005806.2	707	13	240	2629	319	246	546	3590	488	943	962	3932
Endogenous	OMG	NM_002544.3	131	17	13	771	183	42	192	395	204	201	157	940
Endogenous	PARK2	NM_004562.2	17	2	1	85	80	24	50	19	70	52	25	70
Endogenous	PDGFA	NM_002607.5	43	23	64	777	224	545	146	478	695	288	38	504
Endogenous	PDGFRA	NM_006206.3	373	261	45	452	344	149	2013	460	397	578	523	883
Endogenous	PDGFRAD89	MSK_GMB2_001.1	3	6	0	15	27	18	44	20	16	25	9	34
Endogenous	PDGFRADCt	MSK_GMB2_004.1	269	194	18	473	349	130	1965	505	428	640	322	1044
Endogenous	PDPN	NM_006474.4	373	69	28384	7031	9830	2676	6286	3816	7412	5751	85	6366
Endogenous	PHF11	NM_001040443.1	41	124	26	288	490	755	279	404	562	437	47	328
Endogenous	PI3	NM_002638.3	1	9	3	127	1036	140	18	84	23	897	12	202
Endogenous	PIK3CA	NM_006218.2	144	201	264	1449	1515	857	1377	1079	1167	1180	285	1079
Endogenous	PLA2G2A	NM_000300.2	7	72	4	543	312	15	2400	178	305	6311	12	45
Endogenous	PLAT	NM_000930.3	160	63	110	1082	1210	2517	544	2482	798	489	42	1698
Endogenous	POLR2A	NM_000937.2	212	184	65	1336	1954	1203	1599	1008	1178	889	404	1609
Endogenous	PRKCZ	NM_002744.4	87	12	15	74	136	15	99	64	40	94	73	78
Endogenous	PROM1	NM_006017.1	148	13	17	538	40	18	196	179	672	311	18	663
Endogenous	PTEN	NM_000314.3	122	360	105	1084	1324	2612	1278	1213	1031	1006	470	1592
Endogenous	PTGDS	NM_000954.5	219	1302	22	477	1975	111	299	1001	110	881	376	432
Endogenous	PTX3	NM_002852.3	31	18	28	783	3797	1146	97	549	360	3920	181	809
Endogenous	RB1	NM_000321.1	148	165	89	1633	1050	1251	851	1173	1137	936	103	921
Endogenous	RDH14	NM_020905.3	33	46	16	327	316	405	339	282	222	251	268	386
Endogenous	REN	NM_000537.3	3	5	4	14	41	13	53	23	14	27	13	11
Endogenous	RERE	NM_001042681.1	170	185	40	528	414	338	414	332	358	345	588	584
Endogenous	RGN	NM_152869.2	51	91	51	513	161	19	379	324	500	251	29	463
Endogenous	RHOB	NM_004040.2	48	115	24	628	851	229	367	219	559	571	177	330
Endogenous	RTN1	NM_206857.1	80	97	56	2272	429	1908	1190	162	66	528	209	804
Endogenous	S100A4	NM_002961.2	32	487	40	361	498	1278	1152	503	1125	758	110	953
Endogenous	S100A9	NM_002965.2	25	186	16	506	1517	1474	1073	312	231	3853	119	1123
Endogenous	SAA2	NM_030754.3	4	61	1	158	222	9	116	122	23	1429	2	255
Endogenous	SAMD9	NM_017654.2	14	72	23	187	329	940	440	335	94	252	112	359
Endogenous	SAMD9L	NM_152703.2	26	85	66	357	408	476	738	280	256	384	34	419
Endogenous	SDCCAG8	NM_006642.2	139	271	174	1079	1248	1123	1112	537	914	844	776	1131
Endogenous	SDHA	NM_004168.1	51	106	35	544	472	489	419	554	694	615	314	530
Endogenous	SEC61G	NM_001012456.1	501	372	6595	22876	1710	2483	1768	1235	1935	38325	1002	1506
Endogenous	SERPINA1	NM_000295.4	18	205	7	194	1479	1010	1219	277	114	1206	21	405
Endogenous	SETDB2	NM_031915.1	15	35	8	125	158	148	138	96	106	99	81	119
Endogenous	SLC4A4	NM_001098484.2	91	45	371	5376	3166	1467	1224	4617	8052	633	388	5355
Endogenous	SOCS2	NM_003877.3	28	252	348	2837	250	162	254	3410	1843	1623	282	3500
Endogenous	SOX13	NM_005686.2	41	32	21	270	1233	206	151	392	142	99	59	2177
Endogenous	SOX2	NM_003106.2	354	162	197	3285	1340	716	1314	2314	1515	1358	1286	3231
Endogenous	SOX9	NM_000346.2	128	98	302	4354	1995	2128	1250	2963	3322	1820	203	5640
Endogenous	SPRY2	NM_005842.2	109	158	340	2564	1843	2282	610	1940	1668	662	53	1903
Endogenous	SPSB1	NM_025106.3	37	59	6	153	281	187	206	75	125	172	25	121
Endogenous	SRPX	NM_006307.2	79	137	81	1088	1997	13467	3256	2994	3079	724	141	232
Endogenous	STEAP3	NM_001008410.1	35	217	38	619	2210	3302	1028	538	505	716	35	490
Endogenous	TAGLN	NM_003186.3	332	6100	105	3938	2101	1086	1449	1129	3235	5554	358	1485
Endogenous	TBP	NM_003194.3	74	134	77	924	659	571	725	574	691	792	519	795
Endogenous	TCF12	NM_207037.1	562	309	673	4295	2189	1794	2545	5376	1917	1835	1744	4233
Endogenous	TCL1A	NM_021966.1	6	3	1	18	22	23	18	25	23	33	11	17
Endogenous	TIMP1	NM_003254.2	344	1477	218	5775	29854	48188	5685	5231	6034	9437	263	5455
Endogenous	TMEM100	NM_018286.2	61	5	52	698	317	18	91	1385	812	256	746	235
Endogenous	TUSC3	NM_006765.2	41	43	15	153	355	1132	256	230	181	341	978	424
Endogenous	VEGFA	NM_001025366.1	1538	146	165	10527	5443	5620	2207	6320	28067	7618	166	2368
Endogenous	WT1	NM_000378.3	2	1	6	8	50	44	32	12	14	18	11	12
Endogenous	ZNF238	NM_006352.3	16	13	4	30	49	46	51	29	47	42	208	45