ID 			T1-1084	T1-0238	T1-0397	T1-0780	T1-0390	T1-0749	T1-1823	T1-0750	T1-0657	T1-0817	T1-0520	T1-1825
Positive	POS_A(128)	ERCC_00117.1	17021	20442	17996	15145	14134	15790	15770	5379	2521	17575	14447	10766
Positive	POS_B(32)	ERCC_00112.1	4627	5959	4940	4531	4017	4535	4286	1573	645	4866	3991	2760
Positive	POS_C(8)	ERCC_00002.1	1186	1445	1245	1069	993	1025	1089	389	153	1167	1068	755
Positive	POS_D(2)	ERCC_00092.1	338	436	393	341	274	348	345	115	59	399	304	236
Positive	POS_E(0.5)	ERCC_00035.1	36	74	51	57	52	40	51	26	16	57	32	30
Positive	POS_F(0.125)	ERCC_00034.1	36	62	43	51	31	33	48	12	6	41	38	25
Negative	NEG_A(0)	ERCC_00096.1	10	8	9	9	4	12	3	2	5	3	4	8
Negative	NEG_B(0)	ERCC_00041.1	16	14	8	16	18	9	13	16	1	17	17	10
Negative	NEG_C(0)	ERCC_00019.1	10	14	10	8	5	1	7	4	5	5	8	5
Negative	NEG_D(0)	ERCC_00076.1	6	6	5	8	7	4	6	8	2	5	2	4
Negative	NEG_E(0)	ERCC_00098.1	13	6	7	13	4	8	12	7	1	6	6	7
Negative	NEG_F(0)	ERCC_00126.1	9	7	7	6	8	10	7	11	2	6	5	11
Negative	NEG_G(0)	ERCC_00144.1	9	11	9	26	15	7	11	8	2	9	7	11
Negative	NEG_H(0)	ERCC_00154.1	35	13	7	17	14	11	19	9	1	18	10	10
Endogenous	AKR1C3	NM_003739.4	348	150	50	182	150	222	95	78	23	183	120	147
Endogenous	AKT3	NM_005465.3	271	563	286	912	353	570	273	284	163	203	236	980
Endogenous	AQP1	NM_198098.1	216	3864	10	402	514	3176	1282	386	101	370	536	1081
Endogenous	ARC	NM_015193.3	85	456	53	3249	207	401	44	451	331	406	231	604
Endogenous	AVIL	NM_006576.2	110	1346	42	178	87	68	138	77	375	40	40	48
Endogenous	B2M	NM_004048.2	86270	44165	27068	72801	74939	38487	79589	42654	13790	85190	24656	36109
Endogenous	B4GALT1	NM_001497.3	590	293	634	527	1176	441	600	436	171	262	293	333
Endogenous	BEX1	NM_018476.3	503	4064	892	3885	2444	4951	1278	708	353	2813	2545	10570
Endogenous	BMP2	NM_001200.2	47	203	129	233	114	61	152	195	50	95	138	632
Endogenous	CAB39L	NM_001031724.1	205	383	198	648	473	1271	267	387	155	420	533	565
Endogenous	CAPZA2	NM_006136.2	1282	884	538	8605	1931	1167	1294	573	193	1401	1156	1360
Endogenous	CCL2	NM_002982.3	9545	311	593	1264	799	918	6240	1263	224	1007	211	236
Endogenous	CCND2	NM_001759.2	328	2863	1573	10861	2221	1492	847	1677	1450	692	2220	6026
Endogenous	CD163	NM_004244.4	1071	985	1833	550	2407	373	730	1095	952	340	410	299
Endogenous	CD44	NM_000610.3	2078	1309	2622	1962	4428	2222	3157	1961	1099	913	1310	1136
Endogenous	CDH4	NM_001794.2	73	115	132	1209	380	107	115	93	56	79	49	115
Endogenous	CDK4	NM_000075.2	830	10679	659	1486	2035	707	1132	683	4642	1059	1269	2230
Endogenous	CDK6	NM_001259.5	181	293	544	1416	1048	97	2675	216	134	345	52	413
Endogenous	CDKN2A	NM_000077.3	93	250	10	23	28	19	24	22	5	26	17	15
Endogenous	CDKN2B	NM_004936.3	309	243	18	55	39	71	31	61	11	23	25	29
Endogenous	CDKN2C	NM_001262.2	1054	1205	689	2832	1253	148	2244	505	479	2502	1016	1862
Endogenous	CEP170	NM_001042404.1	685	1206	701	2057	869	984	466	742	297	478	579	1433
Endogenous	CFI	NM_000204.3	799	642	453	859	1338	88	715	583	61	115	85	162
Endogenous	CHI3L1	NM_001276.2	9647	6876	23423	27347	47741	4726	124811	175861	16997	25188	17741	1198
Endogenous	CHIC2	NM_012110.2	95	109	79	160	118	76	71	78	42	162	183	175
Endogenous	CLEC2B	NM_005127.2	2357	318	329	130	978	165	861	247	100	437	229	238
Endogenous	CLTC	NM_004859.2	1458	1422	1017	3288	1836	1724	1768	1190	338	824	1570	2293
Endogenous	COL1A2	NM_000089.3	2096	1635	217	1322	606	63	184	1940	119	236	568	567
Endogenous	COL6A3	NM_004369.2	521	119	38	97	24	20	99	387	20	84	104	62
Endogenous	CTDSP2	NM_005730.3	843	7205	1265	3102	2103	1200	1388	783	6427	549	671	1263
Endogenous	CYB5R2	NM_016229.3	89	93	53	124	465	83	24	45	42	58	18	73
Endogenous	CYP27B1	NM_000785.3	22	149	13	44	30	21	26	28	120	15	38	46
Endogenous	DARC	NM_002036.2	86	81	14	33	92	74	28	35	8	26	17	57
Endogenous	DDX1	NM_004939.1	854	1446	640	2764	1660	1301	1213	929	447	1232	990	2048
Endogenous	DENND2A	NM_015689.3	464	512	812	2159	808	988	386	533	204	345	354	642
Endogenous	DLL3	NM_203486.2	16	1151	13	167	48	224	52	110	14	207	58	518
Endogenous	DNM3	NM_015569.3	177	775	80	446	275	398	49	156	40	141	58	1021
Endogenous	DPYD	NM_000110.3	1482	598	613	1011	2427	301	1932	896	431	879	321	157
Endogenous	DYRK3	NM_003582.2	152	172	62	207	251	141	229	178	67	138	272	130
Endogenous	DYRK4	NM_003845.1	46	59	6	43	48	59	30	14	10	45	20	42
Endogenous	E2F4	NM_001950.3	224	311	166	451	429	200	181	236	56	186	138	298
Endogenous	EDNRB	NM_000115.1	1059	4772	617	4021	3953	4804	2068	909	615	1201	1696	6172
Endogenous	EGFR	NM_005228.3	392	401	135	3744	1172	1940	8580	14723	4079	9107	1670	2091
Endogenous	EGFREX30	MSK_GMB2_006.1	387	419	169	3835	1415	2448	7944	8313	5432	5444	2015	2522
Endogenous	EGFRVII	MSK_GMB2_005.1	7	10	7	25	8	14	45	66	23	40	17	26
Endogenous	EGFRVIII	MSK_GMB2_008.1	23	14	17	27	17	10	22	277	6	30	14	23
Endogenous	EMP3	NM_001425.2	469	419	896	1636	1283	959	947	555	250	654	494	194
Endogenous	ENO1	NM_001428.2	3150	3198	6355	10522	4529	5380	6056	3058	1282	6052	2896	8571
Endogenous	EVI2B	NM_006495.3	488	463	393	817	1261	790	638	299	183	404	263	341
Endogenous	FABP5	NM_001444.1	5694	5677	1602	5299	9081	4855	2694	1099	933	9236	2373	3457
Endogenous	FABP7	NM_001446.3	10514	5455	4939	10217	17445	3030	2810	977	1419	9943	1995	10056
Endogenous	FAF1	NM_007051.2	1743	1047	813	2072	1889	513	1140	365	281	1257	1101	1719
Endogenous	FAM119	NM_206914.1	107	787	100	289	171	116	151	92	802	59	163	168
Endogenous	G0S2	NM_015714.3	325	253	379	267	82	250	1219	231	89	303	194	104
Endogenous	GAPDH	NM_002046.3	47199	45233	56204	114280	50939	36133	52395	30280	9551	35149	72229	71138
Endogenous	GATM	NM_001482.2	1990	1795	1646	9070	3901	3288	3773	2199	677	1798	2214	4557
Endogenous	GEN1	NM_182625.3	153	187	62	242	126	60	58	98	33	88	50	273
Endogenous	GOLT1A	NM_198447.1	19	8	8	10	19	7	16	62	6	10	12	8
Endogenous	GPNMB	NM_001005340.1	1283	2105	1311	901	641	4309	1554	1328	158	1489	1451	1241
Endogenous	GRIA2	NM_001083620.1	61	2224	143	1906	354	807	45	422	138	421	34	1947
Endogenous	GRIK1	NM_000830.3	23	155	24	484	53	220	42	96	282	207	268	90
Endogenous	H6PD	NM_004285.3	141	249	194	603	247	336	201	543	236	232	156	322
Endogenous	HGF	NM_000601.4	151	209	53	180	349	127	232	138	41	71	63	162
Endogenous	HIPK3	NM_005734.2	660	449	570	1285	1010	714	852	677	312	288	389	721
Endogenous	HOXA5	NM_019102.2	41	345	25	209	379	295	217	196	1	116	321	359
Endogenous	HP	NM_005143.3	128	1039	34	106	1724	116	5331	186	57	399	77	70
Endogenous	HS1BP3	NM_022460.3	422	327	152	367	390	387	376	310	56	327	420	318
Endogenous	IGF2BP3	NM_006547.2	118	602	168	638	405	65	111	70	63	260	41	565
Endogenous	IGFBP2	NM_000597.2	2196	1198	2554	5196	1911	262	403	1554	359	1487	670	2900
Endogenous	IGFBP6	NM_002178.2	2748	133	917	527	6420	261	226	489	84	119	287	159
Endogenous	IL8	NM_000584.2	2343	2159	805	839	390	257	5285	1252	344	797	2020	626
Endogenous	KIAA0746	NM_015187.3	755	597	540	435	358	156	200	389	200	137	81	764
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	35	28	24	29	24	20	26	15	1	31	12	14
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	26	13	24	32	15	16	18	7	5	16	18	11
Endogenous	KPNA3	NM_002267.3	398	848	433	1317	1064	954	619	506	177	498	477	1373
Endogenous	KRIT1	NM_004912.3	1003	1263	590	1827	901	1053	17964	921	342	588	943	1330
Endogenous	LAPTM4A	NM_014713.4	6675	4407	3978	9967	8828	5514	9361	4380	1615	7165	6852	5536
Endogenous	LGALS3	NM_002306.2	4641	1440	2494	8340	2809	1444	4349	1775	1365	3407	1164	700
Endogenous	LOC390940	XM_001129773.1	123	97	73	664	350	311	295	159	68	304	98	392
Endogenous	LTF	NM_002343.2	29	107	29	19	131	1163	802	18663	41	3884	2800	48
Endogenous	MDM2	NM_002392.2	5913	662	893	2259	3221	785	1911	990	359	455	661	1061
Endogenous	MDM4	NM_002393.3	610	440	187	682	500	479	273	2098	157	319	348	705
Endogenous	MET	NM_000245.2	210	78	354	7394	486	128	129	51	20	32	166	42
Endogenous	MGMT	NM_002412.3	185	366	58	574	189	265	174	230	28	486	91	521
Endogenous	MMP7	NM_002423.3	1056	120	45	3152	165	15	51	20	156	40	30	63
Endogenous	MYCN	NM_005378.4	15	121	13	161	11	67	46	23	18	119	147	182
Endogenous	NAG	NM_015909.2	304	421	277	1116	579	516	580	437	132	374	397	722
Endogenous	NCAM1	NM_000615.5	849	4417	1067	4785	1796	4337	870	1874	734	756	1616	9005
Endogenous	NF1	NM_001042492.1	473	600	142	912	425	713	479	532	223	309	521	1011
Endogenous	NNMT	NM_006169.2	2081	816	914	278	5368	222	6333	451	68	3045	280	294
Endogenous	NPTX2	NM_002523.1	71	148	152	1146	743	510	63	144	78	151	67	100
Endogenous	OLIG2	NM_005806.2	34	2759	618	4491	1572	1497	149	755	404	1181	170	7784
Endogenous	OMG	NM_002544.3	97	1784	37	872	545	1246	116	464	118	428	957	1993
Endogenous	PARK2	NM_004562.2	26	62	27	45	58	102	34	29	15	26	61	100
Endogenous	PDGFA	NM_002607.5	114	116	529	1460	367	175	207	265	97	144	199	256
Endogenous	PDGFRA	NM_006206.3	174	711	77	1309	700	320	33	332	9	2621	503	3236
Endogenous	PDGFRAD89	MSK_GMB2_001.1	23	15	9	25	22	13	19	12	5	40	15	64
Endogenous	PDGFRADCt	MSK_GMB2_004.1	120	680	72	1224	573	322	38	282	7	235	414	3133
Endogenous	PDPN	NM_006474.4	2859	2641	1275	11203	7257	2424	4100	2826	1380	3309	3362	1715
Endogenous	PHF11	NM_001040443.1	461	225	352	737	837	732	451	456	148	464	319	180
Endogenous	PI3	NM_002638.3	31	21	133	70	26	15	2330	23	62	22	26	19
Endogenous	PIK3CA	NM_006218.2	434	549	613	2078	924	534	1144	1796	559	566	499	983
Endogenous	PLA2G2A	NM_000300.2	21	175	17	55	305	57	14439	434	180	5951	98	41
Endogenous	PLAT	NM_000930.3	1486	1230	1198	4475	6905	263	413	613	127	516	154	1128
Endogenous	POLR2A	NM_000937.2	1017	1014	488	2513	930	1012	742	886	332	462	735	1586
Endogenous	PRKCZ	NM_002744.4	15	240	28	250	190	326	25	112	17	65	12	392
Endogenous	PROM1	NM_006017.1	280	794	20	183	80	148	45	493	99	72	61	1145
Endogenous	PTEN	NM_000314.3	862	822	1231	2607	1986	1027	679	811	362	670	970	782
Endogenous	PTGDS	NM_000954.5	851	3952	100	760	1704	2897	1998	2792	69	1302	2078	1128
Endogenous	PTX3	NM_002852.3	1009	184	975	3205	1202	62	1157	488	121	141	120	138
Endogenous	RB1	NM_000321.1	204	819	620	2450	1127	883	688	569	163	469	95	1346
Endogenous	RDH14	NM_020905.3	172	206	150	498	399	300	235	188	52	196	232	332
Endogenous	REN	NM_000537.3	10	22	9	24	16	10	30	30	3	18	11	9
Endogenous	RERE	NM_001042681.1	242	851	175	889	329	447	224	328	194	317	139	667
Endogenous	RGN	NM_152869.2	307	228	18	503	414	1103	269	304	77	396	1174	417
Endogenous	RHOB	NM_004040.2	410	933	119	1088	245	869	323	235	256	444	408	580
Endogenous	RTN1	NM_206857.1	448	923	617	824	1016	957	468	282	305	500	1311	723
Endogenous	S100A4	NM_002961.2	3188	687	1371	581	1564	1832	1762	612	134	2332	624	635
Endogenous	S100A9	NM_002965.2	3071	942	664	1657	1573	681	2107	925	210	1735	980	381
Endogenous	SAA2	NM_030754.3	41	32	14	17	47	11	1787	55	78	85	18	9
Endogenous	SAMD9	NM_017654.2	319	271	98	451	273	240	434	270	54	176	190	187
Endogenous	SAMD9L	NM_152703.2	367	392	139	611	422	373	549	352	106	261	381	175
Endogenous	SDCCAG8	NM_006642.2	1127	1054	491	1398	976	1026	856	958	536	778	870	817
Endogenous	SDHA	NM_004168.1	403	471	415	1034	639	502	270	388	156	233	372	992
Endogenous	SEC61G	NM_001012456.1	2308	1596	1824	4439	4962	1342	44313	24209	4965	30062	2459	3583
Endogenous	SERPINA1	NM_000295.4	813	260	264	478	864	475	662	144	94	407	127	188
Endogenous	SETDB2	NM_031915.1	78	108	68	153	214	199	111	87	36	121	53	159
Endogenous	SLC4A4	NM_001098484.2	1391	667	2608	12960	3188	2638	898	1648	820	1250	559	2023
Endogenous	SOCS2	NM_003877.3	840	249	218	375	452	258	1593	489	829	2183	399	151
Endogenous	SOX13	NM_005686.2	255	298	101	477	383	208	127	562	101	82	173	362
Endogenous	SOX2	NM_003106.2	1449	2671	843	2621	1444	1993	1265	1155	788	1473	1990	4996
Endogenous	SOX9	NM_000346.2	751	995	1205	5924	1618	2209	563	1157	797	820	1267	1163
Endogenous	SPRY2	NM_005842.2	901	363	2099	4143	4688	866	649	755	626	423	269	335
Endogenous	SPSB1	NM_025106.3	33	104	112	208	154	80	348	176	99	108	61	211
Endogenous	SRPX	NM_006307.2	700	351	4026	22833	10625	451	955	327	392	1393	702	278
Endogenous	STEAP3	NM_001008410.1	565	320	785	836	1492	843	1316	962	185	557	496	124
Endogenous	TAGLN	NM_003186.3	4673	1944	538	2891	6597	342	939	2407	3353	1032	934	1479
Endogenous	TBP	NM_003194.3	500	573	362	838	858	459	698	603	210	554	453	590
Endogenous	TCF12	NM_207037.1	750	2103	1170	5818	2301	1914	1256	1773	816	1334	1377	8556
Endogenous	TCL1A	NM_021966.1	23	27	23	33	21	14	19	7	7	33	20	20
Endogenous	TIMP1	NM_003254.2	7754	2100	6879	14676	11569	1563	10462	4355	1719	3788	2842	3359
Endogenous	TMEM100	NM_018286.2	302	939	52	869	531	490	50	142	32	116	442	1231
Endogenous	TUSC3	NM_006765.2	151	183	106	496	310	659	531	322	27	205	438	1775
Endogenous	VEGFA	NM_001025366.1	2046	2713	2150	7155	1154	496	2175	3359	863	908	5115	4671
Endogenous	WT1	NM_000378.3	8	13	9	25	16	8	14	32	2	11	13	19
Endogenous	ZNF238	NM_006352.3	52	211	21	39	46	65	17	25	13	36	41	106