ID 			T1-0524	T1-0875	T1-0960	T1-0410	T1-0846	T1-1830	T1-1834	T1-0963	T1-0850	T1-0849	T1-1600	T1-1047
Positive	POS_A(128)	ERCC_00117.1	3364	8543	9967	10570	7262	6888	10802	12636	11430	12897	12209	6732
Positive	POS_B(32)	ERCC_00112.1	852	2213	2531	2704	1859	1764	2763	3173	3028	3325	3163	1694
Positive	POS_C(8)	ERCC_00002.1	223	620	663	678	483	430	743	760	808	864	790	438
Positive	POS_D(2)	ERCC_00092.1	64	188	202	195	148	143	209	234	252	263	269	148
Positive	POS_E(0.5)	ERCC_00035.1	11	19	21	15	19	18	30	24	29	31	34	17
Positive	POS_F(0.125)	ERCC_00034.1	7	23	22	30	18	16	35	29	37	33	32	16
Negative	NEG_A(0)	ERCC_00096.1	0	2	3	4	0	4	1	2	3	6	3	4
Negative	NEG_B(0)	ERCC_00041.1	0	7	8	2	10	6	7	11	14	6	7	7
Negative	NEG_C(0)	ERCC_00019.1	3	2	5	4	2	1	4	8	3	3	11	9
Negative	NEG_D(0)	ERCC_00076.1	1	5	5	1	3	0	0	8	17	3	9	14
Negative	NEG_E(0)	ERCC_00098.1	0	2	8	2	1	0	3	4	9	7	4	2
Negative	NEG_F(0)	ERCC_00126.1	1	0	4	4	4	3	4	5	11	4	0	8
Negative	NEG_G(0)	ERCC_00144.1	0	3	8	6	4	3	5	2	9	4	6	4
Negative	NEG_H(0)	ERCC_00154.1	4	2	12	4	8	5	11	9	8	14	4	15
Endogenous	AKR1C3	NM_003739.4	10	25	119	76	212	52	356	245	108	1632	153	90
Endogenous	AKT3	NM_005465.3	374	553	1294	274	604	508	502	1035	1894	1363	390	688
Endogenous	AQP1	NM_198098.1	18	246	106	64	3876	1281	1213	6146	37	73	1014	754
Endogenous	ARC	NM_015193.3	133	335	408	395	251	606	336	358	747	659	3376	1385
Endogenous	AVIL	NM_006576.2	8	64	139	25	461	157	56	83	539	74	31	126
Endogenous	B2M	NM_004048.2	3218	13462	79040	29431	63155	29511	55053	44628	16540	57247	27102	58564
Endogenous	B4GALT1	NM_001497.3	34	231	329	88	482	685	437	396	83	512	258	250
Endogenous	BEX1	NM_018476.3	857	2090	4352	2259	2509	2050	3269	7738	13832	6585	575	1515
Endogenous	BMP2	NM_001200.2	24	62	1096	75	363	131	126	214	700	653	109	224
Endogenous	CAB39L	NM_001031724.1	56	219	515	306	393	305	568	1083	280	1696	654	561
Endogenous	CAPZA2	NM_006136.2	153	725	926	2813	691	745	943	1411	797	886	1045	873
Endogenous	CCL2	NM_002982.3	15	127	163	119	326	1657	539	2208	30	1624	36	608
Endogenous	CCND2	NM_001759.2	856	2801	1678	753	2639	2143	2070	7999	3781	2685	8113	8990
Endogenous	CD163	NM_004244.4	63	353	640	173	616	3205	132	1055	121	563	1005	1610
Endogenous	CD44	NM_000610.3	35	405	678	420	1437	2786	4224	2426	390	2929	1151	4694
Endogenous	CDH4	NM_001794.2	17	50	103	37	91	126	78	128	61	132	672	170
Endogenous	CDK4	NM_000075.2	595	5728	18947	927	11627	627	774	1018	77999	895	1086	752
Endogenous	CDK6	NM_001259.5	90	111	422	163	185	249	133	365	377	133	63	701
Endogenous	CDKN2A	NM_000077.3	10	153	288	3	146	8	9	20	505	18	598	14
Endogenous	CDKN2B	NM_004936.3	12	145	439	14	474	31	23	57	577	356	1297	57
Endogenous	CDKN2C	NM_001262.2	304	606	2572	28	1192	824	729	930	2899	471	2388	1393
Endogenous	CEP170	NM_001042404.1	677	928	2319	379	1067	908	863	1618	3639	1776	992	1280
Endogenous	CFI	NM_000204.3	12	117	114	60	462	304	173	484	54	154	91	628
Endogenous	CHI3L1	NM_001276.2	226	2629	270	615	1881	6761	4853	18291	91	292	1997	53903
Endogenous	CHIC2	NM_012110.2	549	54	175	590	491	445	258	362	183	105	92	114
Endogenous	CLEC2B	NM_005127.2	17	61	139	71	363	485	373	1431	75	288	201	1177
Endogenous	CLTC	NM_004859.2	462	1248	2268	901	1308	1483	1583	2684	1587	2197	1546	1981
Endogenous	COL1A2	NM_000089.3	78	294	295	112	315	2205	691	1759	326	444	698	913
Endogenous	COL6A3	NM_004369.2	12	39	29	37	18	348	15	267	29	52	27	180
Endogenous	CTDSP2	NM_005730.3	234	1923	10208	533	9678	1430	1023	2032	46638	1918	1325	1773
Endogenous	CYB5R2	NM_016229.3	32	24	72	11	74	17	23	87	14	15	6	99
Endogenous	CYP27B1	NM_000785.3	4	47	120	15	386	22	9	45	426	6	9	49
Endogenous	DARC	NM_002036.2	5	30	34	30	73	109	113	128	38	62	8	9
Endogenous	DDX1	NM_004939.1	377	961	1960	564	1175	894	959	1641	138813	1508	1096	1222
Endogenous	DENND2A	NM_015689.3	52	416	1763	186	338	460	436	731	661	678	1054	2128
Endogenous	DLL3	NM_203486.2	159	852	2779	171	1585	295	236	597	421	2628	1097	204
Endogenous	DNM3	NM_015569.3	404	325	1109	212	404	276	236	658	1219	921	120	118
Endogenous	DPYD	NM_000110.3	10	190	299	120	251	1217	475	326	511	291	533	639
Endogenous	DYRK3	NM_003582.2	47	82	98	137	155	239	470	333	314	157	67	178
Endogenous	DYRK4	NM_003845.1	2	33	25	28	48	17	19	32	26	22	21	13
Endogenous	E2F4	NM_001950.3	101	299	289	158	154	182	195	381	412	277	238	267
Endogenous	EDNRB	NM_000115.1	67	1685	6414	750	8551	2207	2785	6419	385	11575	5970	2242
Endogenous	EGFR	NM_005228.3	53	116	89	45	712	539	1171	1888	614	3585	37503	36562
Endogenous	EGFREX30	MSK_GMB2_006.1	56	121	126	41	845	726	1415	2498	815	4473	42086	50982
Endogenous	EGFRVII	MSK_GMB2_005.1	2	1	4	2	5	6	14	9	9	27	157	155
Endogenous	EGFRVIII	MSK_GMB2_008.1	2	7	10	5	6	7	8	16	9	13	28	17
Endogenous	EMP3	NM_001425.2	21	153	171	306	338	602	784	607	13	79	639	1023
Endogenous	ENO1	NM_001428.2	2286	5146	6087	6665	4602	5380	4232	7462	10700	6854	9297	15779
Endogenous	EVI2B	NM_006495.3	19	319	405	116	728	625	683	391	92	479	467	240
Endogenous	FABP5	NM_001444.1	1016	4051	6629	446	4626	3481	2627	16385	161	308	4377	1175
Endogenous	FABP7	NM_001446.3	824	1875	6017	5818	1739	1343	5068	2478	1613	674	11895	5795
Endogenous	FAF1	NM_007051.2	327	864	1278	75	836	786	767	1737	2083	1163	1558	1312
Endogenous	FAM119	NM_206914.1	17	540	1491	65	1491	153	130	404	7499	186	202	457
Endogenous	G0S2	NM_015714.3	101	435	477	138	60	371	167	312	131	37	783	293
Endogenous	GAPDH	NM_002046.3	9256	44872	32815	43902	22506	46246	27258	97603	39148	53898	67830	140873
Endogenous	GATM	NM_001482.2	213	1281	4261	1082	1248	1744	2062	7378	1208	2295	4454	3669
Endogenous	GEN1	NM_182625.3	52	58	120	81	110	135	49	121	220	105	114	102
Endogenous	GOLT1A	NM_198447.1	2	3	4	3	13	4	4	17	13	4	3	14
Endogenous	GPNMB	NM_001005340.1	42	1564	1283	380	2880	2783	4941	819	369	1041	882	1515
Endogenous	GRIA2	NM_001083620.1	610	550	1802	556	1292	704	440	1691	3957	2651	561	2075
Endogenous	GRIK1	NM_000830.3	17	10	23	19	76	23	115	176	62	35	155	173
Endogenous	H6PD	NM_004285.3	49	143	355	122	196	402	345	329	345	439	279	640
Endogenous	HGF	NM_000601.4	4	81	42	16	58	137	126	459	303	107	195	55
Endogenous	HIPK3	NM_005734.2	68	265	759	158	490	711	777	1159	334	923	480	1233
Endogenous	HOXA5	NM_019102.2	0	308	9	21	142	176	248	619	17	32	14	586
Endogenous	HP	NM_005143.3	0	50	25	23	318	205	21	1492	26	131	49	295
Endogenous	HS1BP3	NM_022460.3	27	209	321	155	290	291	465	448	238	370	231	361
Endogenous	IGF2BP3	NM_006547.2	79	353	24	179	192	239	194	454	1104	7	175	214
Endogenous	IGFBP2	NM_000597.2	340	2502	2135	2582	195	1449	367	4761	2286	132	3826	5138
Endogenous	IGFBP6	NM_002178.2	12	55	47	73	85	117	64	293	39	140	71	149
Endogenous	IL8	NM_000584.2	12	2497	79	1626	31	1820	23	2089	249	321	117	1303
Endogenous	KIAA0746	NM_015187.3	749	195	759	104	96	168	115	385	65	139	237	205
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	2	8	18	12	18	9	15	30	9	12	9	14
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	21	7	66	21	21	8	10	16	16	14	16	17
Endogenous	KPNA3	NM_002267.3	229	557	1305	456	868	459	522	1369	445	1041	929	982
Endogenous	KRIT1	NM_004912.3	208	1095	1047	324	808	1120	1107	1584	1578	1203	1111	1844
Endogenous	LAPTM4A	NM_014713.4	477	1857	4599	3035	4224	5065	5215	8564	3873	9273	6299	8218
Endogenous	LGALS3	NM_002306.2	122	662	325	1224	1096	323	586	1982	107	334	1248	1423
Endogenous	LOC390940	XM_001129773.1	32	132	360	45	97	56	155	254	21	74	316	184
Endogenous	LTF	NM_002343.2	5	5	17	134	10	12677	265	176	12	2579	398	23604
Endogenous	MDM2	NM_002392.2	152	384	1155	459	744	631	748	1727	861	803	747	1538
Endogenous	MDM4	NM_002393.3	318	333	635	415	464	355	2274	1274	610	777	275	746
Endogenous	MET	NM_000245.2	62	55	43	1685	87	64	203	309	102	34	15	29
Endogenous	MGMT	NM_002412.3	82	102	153	103	155	238	91	428	464	249	502	198
Endogenous	MMP7	NM_002423.3	5	47	16	63	14	57	22	105	24	25	46	33
Endogenous	MYCN	NM_005378.4	29	42	546	69	237	44	74	128	13705	387	77	48
Endogenous	NAG	NM_015909.2	111	371	792	259	473	509	542	1005	67818	756	575	993
Endogenous	NCAM1	NM_000615.5	1001	3049	11711	1103	4096	2341	2726	7146	7089	11669	2949	4378
Endogenous	NF1	NM_001042492.1	264	450	1817	390	767	803	768	1452	1874	1520	744	1442
Endogenous	NNMT	NM_006169.2	17	91	40	195	51	1174	322	497	15	207	55	402
Endogenous	NPTX2	NM_002523.1	96	99	76	89	57	120	118	646	209	254	54	115
Endogenous	OLIG2	NM_005806.2	1759	2432	10352	1995	4294	1458	983	1745	12386	8583	3188	2191
Endogenous	OMG	NM_002544.3	110	719	3658	316	2108	620	697	1493	1113	2098	411	298
Endogenous	PARK2	NM_004562.2	6	57	126	37	53	76	91	155	91	117	69	68
Endogenous	PDGFA	NM_002607.5	13	197	180	117	117	209	130	330	128	86	1532	938
Endogenous	PDGFRA	NM_006206.3	13431	829	43075	12415	9927	4670	5447	2517	10307	778	1272	309
Endogenous	PDGFRAD89	MSK_GMB2_001.1	58	9	239	9404	24	23	45	27	54	6	13	15
Endogenous	PDGFRADCt	MSK_GMB2_004.1	10507	647	39019	8719	8643	3915	4682	2268	8610	684	1131	277
Endogenous	PDPN	NM_006474.4	379	419	1034	1044	2078	3071	3781	2552	1021	144	2151	6676
Endogenous	PHF11	NM_001040443.1	78	113	427	153	454	180	474	727	49	253	151	545
Endogenous	PI3	NM_002638.3	0	11	12	18	6	258	13	25	8	14	8	60
Endogenous	PIK3CA	NM_006218.2	157	414	932	275	580	588	443	746	1258	947	1057	1490
Endogenous	PLA2G2A	NM_000300.2	3	13	13	21	9	505	22	212	16	15	8	47
Endogenous	PLAT	NM_000930.3	324	1467	5637	1237	210	973	295	1956	417	176	1917	1393
Endogenous	POLR2A	NM_000937.2	444	800	1806	339	982	1034	908	2125	2032	2411	957	2081
Endogenous	PRKCZ	NM_002744.4	53	219	263	116	167	85	69	359	310	206	18	15
Endogenous	PROM1	NM_006017.1	82	444	171	318	500	118	253	1591	89	90	103	132
Endogenous	PTEN	NM_000314.3	467	782	2865	466	986	1545	1206	1594	1681	2683	1695	1780
Endogenous	PTGDS	NM_000954.5	57	715	3143	1095	2635	1051	2626	2636	46	801	230	407
Endogenous	PTX3	NM_002852.3	4	105	41	88	30	522	91	601	151	28	261	377
Endogenous	RB1	NM_000321.1	431	675	1633	444	780	658	662	1480	437	1086	275	1387
Endogenous	RDH14	NM_020905.3	59	181	354	110	220	226	323	485	253	433	225	363
Endogenous	REN	NM_000537.3	0	4	7	5	10	7	4	8	48	12	8	13
Endogenous	RERE	NM_001042681.1	161	375	832	244	443	416	391	443	1551	901	320	534
Endogenous	RGN	NM_152869.2	25	133	529	89	282	240	1125	852	20	87	239	251
Endogenous	RHOB	NM_004040.2	67	229	965	267	863	844	357	893	283	2056	357	564
Endogenous	RTN1	NM_206857.1	83	108	336	190	787	498	639	2102	549	3108	762	176
Endogenous	S100A4	NM_002961.2	8	181	82	203	366	739	728	454	68	1138	336	544
Endogenous	S100A9	NM_002965.2	25	524	117	357	479	1259	178	1644	111	295	379	485
Endogenous	SAA2	NM_030754.3	1	3	7	8	8	752	5	1936	11	5	6	44
Endogenous	SAMD9	NM_017654.2	18	127	566	138	1069	312	746	297	115	141	230	513
Endogenous	SAMD9L	NM_152703.2	9	51	170	40	917	427	1287	405	45	139	259	884
Endogenous	SDCCAG8	NM_006642.2	205	487	1100	322	686	698	872	1151	1032	1106	708	1193
Endogenous	SDHA	NM_004168.1	83	295	525	205	335	487	378	786	770	619	588	744
Endogenous	SEC61G	NM_001012456.1	362	2209	920	1115	968	1661	1774	4002	1727	1525	31474	109795
Endogenous	SERPINA1	NM_000295.4	12	187	203	71	356	656	521	498	59	232	146	206
Endogenous	SETDB2	NM_031915.1	25	61	113	65	117	78	88	228	58	152	150	169
Endogenous	SLC4A4	NM_001098484.2	27	285	891	393	1951	1208	1760	1623	137	2764	2048	5252
Endogenous	SOCS2	NM_003877.3	58	155	2775	497	242	478	224	2494	200	594	2164	2655
Endogenous	SOX13	NM_005686.2	189	231	797	140	568	271	172	676	513	615	181	366
Endogenous	SOX2	NM_003106.2	488	1113	4551	1158	1855	1490	2157	5231	5795	3679	3190	2620
Endogenous	SOX9	NM_000346.2	51	506	448	507	1122	861	1505	2466	8653	1887	3654	3892
Endogenous	SPRY2	NM_005842.2	113	219	904	438	368	414	371	862	288	474	1491	2522
Endogenous	SPSB1	NM_025106.3	36	68	235	51	109	286	136	133	101	222	43	175
Endogenous	SRPX	NM_006307.2	97	237	1604	368	338	780	535	1145	306	1112	1135	1246
Endogenous	STEAP3	NM_001008410.1	58	196	271	71	444	671	485	498	71	381	277	800
Endogenous	TAGLN	NM_003186.3	255	908	1116	597	179	1071	536	3043	374	478	717	859
Endogenous	TBP	NM_003194.3	137	404	640	348	334	391	393	739	1050	569	795	1160
Endogenous	TCF12	NM_207037.1	899	1181	12272	1301	3313	1347	1854	2675	7350	7085	1898	4341
Endogenous	TCL1A	NM_021966.1	1	10	17	9	9	15	16	16	8	22	20	27
Endogenous	TIMP1	NM_003254.2	463	1388	3110	2881	948	3440	1991	5058	741	707	3779	4237
Endogenous	TMEM100	NM_018286.2	44	168	1508	370	347	436	260	975	777	2854	733	579
Endogenous	TUSC3	NM_006765.2	401	757	129	497	189	357	130	751	3569	1147	864	200
Endogenous	VEGFA	NM_001025366.1	332	3167	3869	2991	265	4576	572	13669	6603	3376	2417	26464
Endogenous	WT1	NM_000378.3	23	5	6	2	9	4	6	15	20	8	54	12
Endogenous	ZNF238	NM_006352.3	52	76	102	23	118	85	96	104	178	128	14	94