ID 			T2-0511	T2-0043	T2-1045	T2-1789	T2-1060	T2-1453	T2-1452	T2-1063	T2-1791	T2-1388	T2-0147	T2-1389
Positive	POS_A(128)	ERCC_00117.1	11563	17017	14838	17097	14437	16207	14334	15756	19269	13891	16923	13907
Positive	POS_B(32)	ERCC_00112.1	3156	4812	4313	4716	3929	4511	3797	4376	5506	3832	4536	3918
Positive	POS_C(8)	ERCC_00002.1	709	1090	923	1061	911	1011	897	1021	1211	881	1111	906
Positive	POS_D(2)	ERCC_00092.1	222	372	346	368	317	341	322	314	446	295	347	348
Positive	POS_E(0.5)	ERCC_00035.1	38	52	45	65	52	48	48	42	57	56	50	43
Positive	POS_F(0.125)	ERCC_00034.1	27	34	35	41	41	38	31	28	41	32	42	35
Negative	NEG_A(0)	ERCC_00096.1	4	4	7	2	5	3	13	4	10	6	4	6
Negative	NEG_B(0)	ERCC_00041.1	8	10	7	10	7	9	10	3	7	16	7	10
Negative	NEG_C(0)	ERCC_00019.1	4	10	5	8	7	12	4	8	8	7	10	10
Negative	NEG_D(0)	ERCC_00076.1	7	9	6	11	4	7	6	7	11	12	9	8
Negative	NEG_E(0)	ERCC_00098.1	7	5	4	5	1	2	5	8	8	5	5	5
Negative	NEG_F(0)	ERCC_00126.1	7	9	9	10	10	6	6	10	10	16	11	6
Negative	NEG_G(0)	ERCC_00144.1	9	9	11	13	12	10	8	1	18	9	8	11
Negative	NEG_H(0)	ERCC_00154.1	6	8	11	17	6	9	8	16	17	14	9	10
Endogenous	AKR1C3	NM_003739.4	135	40	254	156	183	80	57	62	446	235	260	261
Endogenous	AKT3	NM_005465.3	703	820	606	614	669	273	817	574	938	1826	394	689
Endogenous	AQP1	NM_198098.1	329	44	1574	366	53	135	347	1078	958	606	232	267
Endogenous	ARC	NM_015193.3	2105	1254	369	375	338	2247	76	1962	322	137	110	505
Endogenous	AVIL	NM_006576.2	33	118	78	44	136	63	94	73	236	154	75	125
Endogenous	B2M	NM_004048.2	88754	95712	110028	51844	90835	73872	111083	63539	42823	216855	208576	107247
Endogenous	B4GALT1	NM_001497.3	679	708	1356	537	1874	345	755	523	386	2396	3082	3165
Endogenous	BEX1	NM_018476.3	2234	1804	1656	2112	3380	1942	2159	7100	781	3162	849	641
Endogenous	BMP2	NM_001200.2	152	188	231	386	323	336	310	121	60	637	622	253
Endogenous	CAB39L	NM_001031724.1	594	604	863	2062	305	326	413	800	2594	951	241	437
Endogenous	CAPZA2	NM_006136.2	997	1699	1936	1465	1611	1037	1226	1936	2204	2062	1713	2103
Endogenous	CCL2	NM_002982.3	929	1061	1651	56	4946	312	5279	607	239	938	4190	13178
Endogenous	CCND2	NM_001759.2	9398	4322	3299	10843	12779	2797	5318	3856	3879	6895	1340	1485
Endogenous	CD163	NM_004244.4	1733	1099	13979	823	8510	482	2498	1995	179	3327	15306	9497
Endogenous	CD44	NM_000610.3	2039	1838	2443	750	3673	533	3614	750	570	1488	2922	6067
Endogenous	CDH4	NM_001794.2	584	1511	334	1888	878	904	839	346	322	148	303	230
Endogenous	CDK4	NM_000075.2	619	976	804	429	849	865	653	898	7024	741	588	893
Endogenous	CDK6	NM_001259.5	653	1451	137	1742	668	761	432	308	49	3166	233	304
Endogenous	CDKN2A	NM_000077.3	19	20	23	9	21	10	10	14	125	174	237	44
Endogenous	CDKN2B	NM_004936.3	36	40	48	39	83	17	39	34	81	1390	880	135
Endogenous	CDKN2C	NM_001262.2	1523	1823	701	2287	2379	2669	897	2050	1799	2425	402	1165
Endogenous	CEP170	NM_001042404.1	2273	3352	2506	1706	2794	911	2894	1693	2169	4770	2391	3311
Endogenous	CFI	NM_000204.3	827	1408	754	158	1160	237	1008	284	66	967	2192	1736
Endogenous	CHI3L1	NM_001276.2	139598	177486	210592	2357	210393	889	8692	6351	613	10856	111873	275416
Endogenous	CHIC2	NM_012110.2	199	321	346	206	281	180	180	274	288	939	212	214
Endogenous	CLEC2B	NM_005127.2	263	752	1541	193	1128	194	758	550	370	1909	1240	612
Endogenous	CLTC	NM_004859.2	1077	1008	1427	1133	2152	1097	1125	973	692	1645	1172	2008
Endogenous	COL1A2	NM_000089.3	1111	1317	935	146	2240	232	397	525	228	882	5097	2821
Endogenous	COL6A3	NM_004369.2	256	117	335	29	652	36	169	98	9	30	1623	694
Endogenous	CTDSP2	NM_005730.3	1844	2575	2272	2260	3315	1025	2456	1816	8205	3877	2153	2988
Endogenous	CYB5R2	NM_016229.3	113	68	144	100	123	106	88	49	20	129	109	333
Endogenous	CYP27B1	NM_000785.3	14	65	15	37	24	19	19	27	118	56	54	34
Endogenous	DARC	NM_002036.2	30	35	72	30	252	24	33	86	25	67	435	104
Endogenous	DDX1	NM_004939.1	1686	2008	1287	2190	2072	1262	1811	1879	1394	2218	1166	1893
Endogenous	DENND2A	NM_015689.3	841	944	778	1498	531	758	480	1292	924	758	292	618
Endogenous	DLL3	NM_203486.2	282	615	366	156	221	321	83	605	134	320	49	47
Endogenous	DNM3	NM_015569.3	146	322	138	138	343	49	161	150	87	373	152	410
Endogenous	DPYD	NM_000110.3	1286	289	3237	585	2086	514	2098	749	416	1152	2802	3521
Endogenous	DYRK3	NM_003582.2	180	200	523	103	477	62	395	144	356	167	270	565
Endogenous	DYRK4	NM_003845.1	20	31	121	19	76	20	43	38	23	157	151	104
Endogenous	E2F4	NM_001950.3	225	410	260	298	367	253	284	269	236	507	373	334
Endogenous	EDNRB	NM_000115.1	2043	4939	1574	10810	808	1837	4513	6750	5805	2393	601	1767
Endogenous	EGFR	NM_005228.3	22055	39470	15467	78593	19450	31316	10103	35126	12468	140323	217	1334
Endogenous	EGFREX30	MSK_GMB2_006.1	2771	1054	25271	92420	27949	42978	15814	54646	19055	190603	276	1969
Endogenous	EGFRVII	MSK_GMB2_005.1	126	177	125	206	112	164	66	166	58	544	19	22
Endogenous	EGFRVIII	MSK_GMB2_008.1	230	41	26	29	91	25	75	43	68	38	10	18
Endogenous	EMP3	NM_001425.2	1668	1148	709	727	1201	668	1509	339	480	418	782	1050
Endogenous	ENO1	NM_001428.2	7947	9604	6799	10638	12197	5916	15962	7580	2782	4653	4242	9379
Endogenous	EVI2B	NM_006495.3	547	267	2122	468	1023	228	738	637	240	1904	1936	1958
Endogenous	FABP5	NM_001444.1	3798	387	5215	226	1916	277	1804	427	12563	9368	9370	9693
Endogenous	FABP7	NM_001446.3	15149	20256	2150	34726	7026	8062	36836	4911	8197	8057	8356	20076
Endogenous	FAF1	NM_007051.2	1312	1832	776	1833	1574	1445	1656	1493	1214	2794	812	2335
Endogenous	FAM119	NM_206914.1	276	218	285	176	355	70	208	171	1270	309	213	241
Endogenous	G0S2	NM_015714.3	117	332	1474	88	920	394	673	182	729	47	1882	462
Endogenous	GAPDH	NM_002046.3	60362	83979	76254	56358	80751	67869	92731	57638	23252	32698	38823	111514
Endogenous	GATM	NM_001482.2	11272	4907	2108	10162	6744	5265	8279	7588	2742	4361	2934	5980
Endogenous	GEN1	NM_182625.3	170	484	168	170	266	110	183	164	215	291	152	616
Endogenous	GOLT1A	NM_198447.1	31	38	40	30	39	32	29	28	11	11	19	47
Endogenous	GPNMB	NM_001005340.1	504	959	7739	505	3674	237	3900	1237	503	13436	11006	6794
Endogenous	GRIA2	NM_001083620.1	999	2444	696	1518	2020	153	1115	1035	935	585	289	429
Endogenous	GRIK1	NM_000830.3	424	183	355	766	193	205	708	897	571	91	95	204
Endogenous	H6PD	NM_004285.3	622	621	382	750	947	137	877	487	570	1699	391	1023
Endogenous	HGF	NM_000601.4	162	69	360	166	193	237	151	82	154	6907	627	627
Endogenous	HIPK3	NM_005734.2	440	505	620	622	699	247	575	394	512	907	613	973
Endogenous	HOXA5	NM_019102.2	13	145	288	20	87	347	174	279	10	117	14	73
Endogenous	HP	NM_005143.3	683	47	8258	197	17120	241	377	749	176	307	1394	816
Endogenous	HS1BP3	NM_022460.3	223	292	625	229	696	341	374	393	293	526	487	594
Endogenous	IGF2BP3	NM_006547.2	325	1383	329	134	939	665	1237	133	9	723	117	200
Endogenous	IGFBP2	NM_000597.2	3275	8419	1596	2749	3480	4003	2431	3591	743	413	1854	5646
Endogenous	IGFBP6	NM_002178.2	747	337	439	220	1494	115	107	197	39	155	984	4356
Endogenous	IL8	NM_000584.2	1923	1495	13872	290	8076	301	3855	1629	82	136	10521	3929
Endogenous	KIAA0746	NM_015187.3	619	601	1378	185	1052	107	150	1397	179	5179	4219	2854
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	12	6	11	10	7	4	10	7	7	3	1	9
Endogenous	KIAABRAF16-9	MSK_GMB2_003.1	4	12	15	16	5	9	5	6	4	20	13	8
Endogenous	KPNA3	NM_002267.3	731	1479	877	1336	952	597	1252	1213	1800	1793	961	1080
Endogenous	KRIT1	NM_004912.3	1253	2244	1383	1008	1347	1071	927	1441	1945	3470	1084	1801
Endogenous	LAPTM4A	NM_014713.4	7751	7393	11809	11399	8790	6423	7675	8795	9920	11387	7739	11535
Endogenous	LGALS3	NM_002306.2	9192	9506	2865	2660	13195	2217	14819	2773	429	4980	7728	5476
Endogenous	LOC390940	XM_001129773.1	638	552	377	641	585	585	320	610	548	231	377	526
Endogenous	LTF	NM_002343.2	240	164	24051	25	735	43	96	2440	136	49	1661	2750
Endogenous	MDM2	NM_002392.2	1025	796	753	590	1263	415	1137	981	661	2084	700	5311
Endogenous	MDM4	NM_002393.3	282	853	452	708	464	165	389	407	1170	1166	315	500
Endogenous	MET	NM_000245.2	211	155	88	59	321	21	37	33	27	375	348	758
Endogenous	MGMT	NM_002412.3	139	55	257	76	509	285	122	276	270	671	443	545
Endogenous	MMP7	NM_002423.3	50	79	923	24	160	18	94	42	15	69	356	15597
Endogenous	MYCN	NM_005378.4	110	202	45	89	101	42	38	40	165	182	25	37
Endogenous	NAG	NM_015909.2	687	920	661	1012	937	337	625	586	640	906	505	663
Endogenous	NCAM1	NM_000615.5	3269	3343	4269	11048	4944	2119	2692	3563	3500	12202	1425	4886
Endogenous	NF1	NM_001042492.1	980	1457	1036	1674	1365	276	948	829	873	2684	621	861
Endogenous	NNMT	NM_006169.2	1071	3003	3058	91	2887	600	4820	173	84	976	1987	5400
Endogenous	NPTX2	NM_002523.1	190	53	3687	595	92	132	112	111	103	433	316	702
Endogenous	OLIG2	NM_005806.2	3570	3099	1408	4025	1366	4676	1063	7034	1361	1109	443	680
Endogenous	OMG	NM_002544.3	604	185	723	1007	263	210	94	1092	358	926	365	690
Endogenous	PARK2	NM_004562.2	68	54	42	79	36	14	55	40	69	196	29	65
Endogenous	PDGFA	NM_002607.5	1237	1162	633	1682	1261	1040	844	831	1047	290	245	281
Endogenous	PDGFRA	NM_006206.3	206	5299	446	466	2018	1813	342	749	86	31389	517	471
Endogenous	PDGFRAD89	MSK_GMB2_001.1	13	61	20	23	29	16	13	14	16	158	22	27
Endogenous	PDGFRADCt	MSK_GMB2_004.1	144	3682	308	407	1508	1123	230	601	68	25276	406	373
Endogenous	PDPN	NM_006474.4	17055	11675	9844	3360	9500	3616	19026	5813	1761	7871	8567	15559
Endogenous	PHF11	NM_001040443.1	421	599	839	618	700	290	599	780	1370	1611	1119	901
Endogenous	PI3	NM_002638.3	62	305	2886	10	10723	4	96	49	9	26	103	1461
Endogenous	PIK3CA	NM_006218.2	1141	873	880	1426	1005	490	1255	960	501	12855	794	976
Endogenous	PLA2G2A	NM_000300.2	2453	1987	31152	14	2797	5	88	30	8	49	4171	401
Endogenous	PLAT	NM_000930.3	2611	3112	1158	510	2546	2146	1245	2045	165	5707	886	3086
Endogenous	POLR2A	NM_000937.2	1175	2130	1334	1648	2404	692	1993	1457	696	2965	1789	3397
Endogenous	PRKCZ	NM_002744.4	211	24	89	251	177	64	88	279	25	252	129	148
Endogenous	PROM1	NM_006017.1	56	823	517	138	1007	435	265	284	2350	276	71	119
Endogenous	PTEN	NM_000314.3	1665	318	2836	1630	2231	1089	1739	1819	259	4500	2394	2841
Endogenous	PTGDS	NM_000954.5	452	109	958	428	1548	126	173	1059	78	3347	2266	1531
Endogenous	PTX3	NM_002852.3	753	975	940	170	3326	137	2433	507	92	88	900	2413
Endogenous	RB1	NM_000321.1	811	1823	980	1681	1097	599	1682	1246	1261	2242	944	1204
Endogenous	RDH14	NM_020905.3	461	523	570	638	668	317	465	507	453	824	489	724
Endogenous	REN	NM_000537.3	27	39	22	33	23	28	21	23	27	27	29	13
Endogenous	RERE	NM_001042681.1	564	1323	445	763	1174	533	774	578	527	1971	336	849
Endogenous	RGN	NM_152869.2	310	233	558	870	325	310	381	590	1241	370	164	646
Endogenous	RHOB	NM_004040.2	647	500	516	1646	523	142	265	358	385	956	561	1230
Endogenous	RTN1	NM_206857.1	3709	242	468	1663	469	1508	1470	1928	174	1059	967	905
Endogenous	S100A4	NM_002961.2	684	1779	2398	285	4723	394	4129	910	555	1097	4752	2219
Endogenous	S100A9	NM_002965.2	677	452	2843	120	2264	472	1092	288	75	203	3522	1212
Endogenous	SAA2	NM_030754.3	106	71	9261	22	34303	22	134	28	17	72	639	3280
Endogenous	SAMD9	NM_017654.2	312	769	422	2399	412	247	405	498	383	1409	616	713
Endogenous	SAMD9L	NM_152703.2	377	695	425	5586	259	188	320	289	742	882	850	583
Endogenous	SDCCAG8	NM_006642.2	1595	1479	2476	1988	2340	1056	1947	1581	2759	3643	1794	2569
Endogenous	SDHA	NM_004168.1	631	895	869	1279	1002	525	763	787	601	1741	694	1153
Endogenous	SEC61G	NM_001012456.1	1589	2723	8143	24551	86141	61876	50366	64772	35298	12321	2440	3354
Endogenous	SERPINA1	NM_000295.4	146	249	802	128	645	111	573	137	81	537	1109	1167
Endogenous	SETDB2	NM_031915.1	134	179	246	199	180	78	203	204	303	520	242	218
Endogenous	SLC4A4	NM_001098484.2	4741	2870	5723	13815	1251	3395	4408	6637	2482	3671	840	5244
Endogenous	SOCS2	NM_003877.3	1672	2638	1027	6075	984	403	915	2098	4510	15598	366	1442
Endogenous	SOX13	NM_005686.2	487	508	367	702	730	337	395	643	112	1489	255	488
Endogenous	SOX2	NM_003106.2	2670	3042	1977	3609	2773	2092	2326	3433	3494	5554	1165	1794
Endogenous	SOX9	NM_000346.2	5754	5542	2189	5984	3473	2125	3810	3034	3250	6174	997	2887
Endogenous	SPRY2	NM_005842.2	1040	2698	1013	3235	789	961	1684	2429	1296	3646	779	1247
Endogenous	SPSB1	NM_025106.3	265	217	489	153	400	100	380	126	36	245	225	408
Endogenous	SRPX	NM_006307.2	5777	861	2126	4787	1599	3360	2138	1407	967	1482	1249	2465
Endogenous	STEAP3	NM_001008410.1	1040	1158	2284	508	1680	1099	1801	1019	608	483	1313	3209
Endogenous	TAGLN	NM_003186.3	1929	2170	1628	547	4255	905	1840	1777	202	760	5163	8291
Endogenous	TBP	NM_003194.3	360	583	278	293	283	160	320	250	391	1012	379	503
Endogenous	TCF12	NM_207037.1	4272	6557	2699	5885	5783	4916	4018	4355	1663	14812	2354	3341
Endogenous	TCL1A	NM_021966.1	7	7	10	6	18	6	5	3	5	20	21	13
Endogenous	TIMP1	NM_003254.2	16611	9512	20955	4284	37857	5429	10587	10346	1841	5338	29782	42184
Endogenous	TMEM100	NM_018286.2	267	31	391	112	147	914	140	782	34	1433	149	598
Endogenous	TUSC3	NM_006765.2	299	40	1001	185	222	172	142	195	21	282	319	1764
Endogenous	VEGFA	NM_001025366.1	7403	50724	9361	2117	9580	1643	18328	4112	452	2191	6090	17988
Endogenous	WT1	NM_000378.3	6	10	28	6	17	4	6	70	5	7	8	55
Endogenous	ZNF238	NM_006352.3	19	129	37	37	55	18	30	37	139	218	38	62