ID 			T2-0360	T2-0026	T2-0344	T2-0139	T2-1746	T2-0512	T2-0456	T2-1751	T2-0531	T2-1832	T2-1451	T2-0141
Positive	POS_A(128)	ERCC_00117.1	6420	9049	8465	9717	7936	7475	9300	8049	8530	9140	9391	7467
Positive	POS_B(32)	ERCC_00112.1	1654	2254	2007	2317	1870	1745	2111	1857	2073	2171	2195	1687
Positive	POS_C(8)	ERCC_00002.1	314	435	421	453	398	341	414	393	380	423	464	358
Positive	POS_D(2)	ERCC_00092.1	113	151	138	153	160	137	150	143	135	141	177	122
Positive	POS_E(0.5)	ERCC_00035.1	30	37	19	28	26	22	27	29	32	28	21	14
Positive	POS_F(0.125)	ERCC_00034.1	30	43	40	32	42	30	33	31	35	35	51	31
Negative	NEG_A(0)	ERCC_00096.1	9	11	12	6	7	11	8	7	10	4	17	9
Negative	NEG_B(0)	ERCC_00041.1	7	5	10	5	4	13	14	13	12	8	12	8
Negative	NEG_C(0)	ERCC_00019.1	10	9	8	9	17	10	9	14	10	13	11	13
Negative	NEG_D(0)	ERCC_00076.1	7	5	4	13	10	11	9	19	17	9	8	10
Negative	NEG_E(0)	ERCC_00098.1	13	11	10	3	10	8	10	9	6	6	11	7
Negative	NEG_F(0)	ERCC_00126.1	18	24	13	8	19	9	11	9	16	9	16	11
Negative	NEG_G(0)	ERCC_00144.1	15	14	2	13	3	23	5	13	8	15	7	10
Negative	NEG_H(0)	ERCC_00154.1	38	10	4	15	12	40	8	22	14	37	17	21
Endogenous	AKR1C3	NM_003739.4	128	305	507	319	235	204	445	133	69	496	180	612
Endogenous	AKT3	NM_005465.3	573	1478	693	199	1836	824	1033	954	357	299	786	417
Endogenous	AQP1	NM_198098.1	1400	728	40	32	6545	408	209	68	6390	76	5459	2146
Endogenous	ARC	NM_015193.3	385	422	148	71	1132	120	36	763	1209	135	874	131
Endogenous	AVIL	NM_006576.2	139	198	14	48	1486	64	43	71	34	149	384	53
Endogenous	B2M	NM_004048.2	94615	44482	23883	125578	34139	69334	95968	75092	30505	66255	94398	80177
Endogenous	B4GALT1	NM_001497.3	1751	708	157	1158	525	2538	3758	1726	362	1224	878	1033
Endogenous	BEX1	NM_018476.3	1051	10470	12256	457	9108	561	538	1807	2689	1123	6983	1857
Endogenous	BMP2	NM_001200.2	284	640	2873	95	533	165	184	942	139	222	564	203
Endogenous	CAB39L	NM_001031724.1	349	377	636	122	787	196	370	343	564	318	271	449
Endogenous	CAPZA2	NM_006136.2	1507	1340	848	1301	1831	950	1522	1506	1064	1245	1266	1444
Endogenous	CCL2	NM_002982.3	8853	360	35	3857	586	2479	457	6096	357	2736	1791	1448
Endogenous	CCND2	NM_001759.2	2358	2936	6747	259	9286	2514	684	4842	8821	508	5966	630
Endogenous	CD163	NM_004244.4	9525	1813	153	6347	702	5247	9681	3896	750	4210	2813	5067
Endogenous	CD44	NM_000610.3	14960	4842	365	2518	3338	12920	4788	8157	3762	12655	12110	4299
Endogenous	CDH4	NM_001794.2	84	158	300	76	90	96	36	399	647	263	186	99
Endogenous	CDK4	NM_000075.2	1327	2760	2286	457	19812	1266	5521	1261	1358	1478	24951	785
Endogenous	CDK6	NM_001259.5	499	875	90	187	936	177	632	1437	518	279	658	403
Endogenous	CDKN2A	NM_000077.3	33	1004	27	18	704	22	1509	25	17	23	517	11
Endogenous	CDKN2B	NM_004936.3	65	1746	856	50	1083	91	407	88	17	704	610	51
Endogenous	CDKN2C	NM_001262.2	332	7259	568	224	2787	1185	2174	762	1527	734	1660	594
Endogenous	CEP170	NM_001042404.1	1575	3232	4025	708	3387	1020	2524	1860	952	939	1649	938
Endogenous	CFI	NM_000204.3	2569	694	130	405	246	1848	1350	2186	375	2330	1812	571
Endogenous	CHI3L1	NM_001276.2	139254	5455	98	44615	28801	161126	9635	78996	39926	149047	13396	51085
Endogenous	CHIC2	NM_012110.2	429	696	359	229	352	371	431	396	229	386	361	308
Endogenous	CLEC2B	NM_005127.2	1479	437	99	1217	487	1215	5742	1239	300	775	591	989
Endogenous	CLTC	NM_004859.2	4044	4223	2917	1872	4253	3311	6437	3609	2405	2749	3533	2745
Endogenous	COL1A2	NM_000089.3	2702	1463	860	7798	1880	15234	21467	6489	293	7124	1777	3434
Endogenous	COL6A3	NM_004369.2	283	182	14	1234	171	1656	18364	970	39	343	200	854
Endogenous	CTDSP2	NM_005730.3	2654	2842	1591	801	15954	1702	3058	2602	1283	1769	19597	1234
Endogenous	CYB5R2	NM_016229.3	109	65	5	67	14	150	305	75	17	89	27	80
Endogenous	CYP27B1	NM_000785.3	35	49	7	19	199	17	54	24	23	20	95	25
Endogenous	DARC	NM_002036.2	232	142	14	144	81	293	12	60	20	119	95	66
Endogenous	DDX1	NM_004939.1	1623	3137	1951	656	2577	1354	2446	1764	1600	1265	1722	1039
Endogenous	DENND2A	NM_015689.3	1426	1190	412	164	3051	560	727	1379	1937	1428	910	643
Endogenous	DLL3	NM_203486.2	57	613	1061	8	6511	40	130	63	47	50	2104	64
Endogenous	DNM3	NM_015569.3	430	3164	882	120	1550	309	277	362	78	178	770	411
Endogenous	DPYD	NM_000110.3	2223	974	46	1454	497	2265	2986	2325	973	3224	1068	1337
Endogenous	DYRK3	NM_003582.2	835	458	115	166	372	557	1087	376	201	511	539	290
Endogenous	DYRK4	NM_003845.1	63	142	37	115	72	47	43	46	25	22	40	83
Endogenous	E2F4	NM_001950.3	606	722	347	455	891	422	799	876	452	440	478	544
Endogenous	EDNRB	NM_000115.1	676	2397	406	596	7762	727	1207	2278	5010	446	3505	1988
Endogenous	EGFR	NM_005228.3	3659	3997	9263	182	10537	770	1245	484	56864	3620	1375	1552
Endogenous	EGFREX30	MSK_GMB2_006.1	4021	4484	11885	173	12174	948	1577	584	70396	3816	1654	1545
Endogenous	EGFRVII	MSK_GMB2_005.1	24	26	71	11	58	13	19	17	354	21	17	15
Endogenous	EGFRVIII	MSK_GMB2_008.1	640	8	17	10	13	13	11	15	5513	13	14	7
Endogenous	EMP3	NM_001425.2	1192	503	38	477	144	1135	2029	2288	1457	1429	518	959
Endogenous	ENO1	NM_001428.2	7723	10610	1993	2829	9397	5450	22373	6380	466	7599	9825	4267
Endogenous	EVI2B	NM_006495.3	905	581	147	964	646	1138	848	980	479	976	610	1070
Endogenous	FABP5	NM_001444.1	6732	2061	194	4085	5236	5328	3666	7457	5874	4167	8088	5343
Endogenous	FABP7	NM_001446.3	2720	1332	4986	1713	1087	9775	9141	19832	12785	1584	10073	2816
Endogenous	FAF1	NM_007051.2	234	3475	537	463	1568	1230	1522	933	984	787	1100	766
Endogenous	FAM119	NM_206914.1	480	418	112	115	3110	181	227	196	227	287	5187	147
Endogenous	G0S2	NM_015714.3	1810	241	17	1938	1147	268	1233	2559	134	695	543	1269
Endogenous	GAPDH	NM_002046.3	107476	83396	66508	28343	81846	83432	129678	82464	124495	64997	62501	37605
Endogenous	GATM	NM_001482.2	3363	1624	121	1101	5666	2169	507	4569	6153	5112	5409	2934
Endogenous	GEN1	NM_182625.3	231	1398	105	88	300	178	398	144	76	156	187	223
Endogenous	GOLT1A	NM_198447.1	11	6	5	3	12	13	9	13	13	10	5	18
Endogenous	GPNMB	NM_001005340.1	4306	4233	184	3227	957	1738	31554	2759	943	973	2463	5281
Endogenous	GRIA2	NM_001083620.1	623	3342	3268	208	4878	47	126	933	626	74	1764	614
Endogenous	GRIK1	NM_000830.3	28	147	23	38	114	21	17	391	158	190	133	100
Endogenous	H6PD	NM_004285.3	888	400	85	210	521	605	736	773	36	951	321	343
Endogenous	HGF	NM_000601.4	1844	567	46	229	306	340	822	802	67	746	177	169
Endogenous	HIPK3	NM_005734.2	1468	1413	546	703	854	1378	1107	1499	541	1276	1155	883
Endogenous	HOXA5	NM_019102.2	378	233	2	19	398	38	37	59	31	59	172	46
Endogenous	HP	NM_005143.3	12011	78	207	872	196	76	127	669	557	718	922	406
Endogenous	HS1BP3	NM_022460.3	733	647	402	325	685	607	1007	478	433	577	523	445
Endogenous	IGF2BP3	NM_006547.2	351	1341	10	105	902	42	411	451	440	15	601	56
Endogenous	IGFBP2	NM_000597.2	2646	2885	185	674	3732	6645	10095	4468	3808	2988	4693	2237
Endogenous	IGFBP6	NM_002178.2	842	849	116	731	125	2225	361	2009	78	3967	78	3874
Endogenous	IL8	NM_000584.2	41796	1167	69	13013	1406	307	2879	21423	442	6630	4999	5536
Endogenous	KIAA0746	NM_015187.3	773	151	54	521	446	2730	714	1382	109	452	456	677
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	15	12	15	8	8	11	10	12	11	7	14	11
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	19	23	16	5	15	10	12	10	10	11	35	4
Endogenous	KPNA3	NM_002267.3	640	1245	891	475	1469	542	882	1019	805	475	798	664
Endogenous	KRIT1	NM_004912.3	1127	1731	614	324	2101	548	1010	892	608	803	640	692
Endogenous	LAPTM4A	NM_014713.4	8608	9136	5191	5799	6612	8319	15191	7925	6534	6589	6074	6122
Endogenous	LGALS3	NM_002306.2	3935	2801	129	5519	608	3360	7639	14960	6493	3720	2882	4087
Endogenous	LOC390940	XM_001129773.1	228	94	38	204	288	483	131	378	512	426	475	240
Endogenous	LTF	NM_002343.2	35385	320	44	1527	891	10959	14869	1650	440	27430	5028	18152
Endogenous	MDM2	NM_002392.2	1161	1409	1131	805	983	6521	911	1792	1061	1573	33365	1495
Endogenous	MDM4	NM_002393.3	306	789	205	167	455	105	186	256	189	184	146	198
Endogenous	MET	NM_000245.2	1339	64	15	182	264	364	370	1263	18	6731	216	394
Endogenous	MGMT	NM_002412.3	423	582	103	281	144	556	528	349	79	356	351	434
Endogenous	MMP7	NM_002423.3	81	1238	28	1387	148	188	841	1982	17	46	179	417
Endogenous	MYCN	NM_005378.4	36	747	853	22	663	13	7	59	59	30	262	44
Endogenous	NBAS	NM_015909.2	605	1141	638	287	1182	576	674	693	496	477	655	418
Endogenous	NCAM1	NM_000615.5	2911	11356	9604	446	12681	2345	426	1599	2464	2402	6707	1391
Endogenous	NF1	NM_001042492.1	1357	2529	2112	428	2096	413	881	1262	665	910	1166	612
Endogenous	NNMT	NM_006169.2	4216	258	42	2468	525	7259	7394	1398	1262	4001	2784	769
Endogenous	NPTX2	NM_002523.1	269	887	173	428	259	287	581	520	199	1028	439	2917
Endogenous	OLIG2	NM_005806.2	512	6055	16203	129	6259	32	36	1354	1157	62	3633	706
Endogenous	OMG	NM_002544.3	191	1090	1675	98	1850	13	20	216	569	31	1668	287
Endogenous	PARK2	NM_004562.2	101	90	112	18	200	29	27	87	80	26	119	41
Endogenous	PDGFA	NM_002607.5	331	139	66	77	382	65	44	964	448	53	194	107
Endogenous	PDGFRA	NM_006206.3	4264	2359	479	662	2307	540	2268	649	186	426	3486	707
Endogenous	PDGFRAD89	MSK_GMB2_001.1	18	13	8	7	10	5	5	5	4	9	14	5
Endogenous	PDGFRADCt	MSK_GMB2_004.1	2252	1175	241	300	1258	263	1225	338	100	245	1910	364
Endogenous	PDPN	NM_006474.4	17209	1204	57	4211	6508	4126	9393	15142	7165	5395	5573	3545
Endogenous	PHF11	NM_001040443.1	451	281	58	512	282	314	311	482	356	355	214	483
Endogenous	PI3	NM_002638.3	3371	217	5	1421	523	58	58	3365	20	135	377	1845
Endogenous	PIK3CA	NM_006218.2	751	1389	1127	275	975	775	1270	1119	408	699	872	455
Endogenous	PLA2G2A	NM_000300.2	7964	19	7	428	138	51	18	215	740	23	3249	72
Endogenous	PLAT	NM_000930.3	616	406	219	307	474	3659	1285	2554	322	1341	2235	561
Endogenous	POLR2A	NM_000937.2	2724	4698	2526	891	2246	2583	2072	2347	995	1916	1661	1541
Endogenous	PRKCZ	NM_002744.4	122	339	289	46	437	80	34	100	26	75	310	115
Endogenous	PROM1	NM_006017.1	247	70	28	24	968	125	40	102	268	236	1444	51
Endogenous	PTEN	NM_000314.3	1002	2715	2909	999	1992	1056	2278	1757	829	761	1018	1441
Endogenous	PTGDS	NM_000954.5	3100	4293	111	889	702	606	4366	1085	158	1103	698	3815
Endogenous	PTX3	NM_002852.3	6103	682	23	2070	709	1063	1695	8087	188	3576	2242	1218
Endogenous	RB1	NM_000321.1	870	655	881	523	1681	425	347	1547	980	356	701	592
Endogenous	RDH14	NM_020905.3	580	828	340	253	533	591	900	670	396	547	464	441
Endogenous	REN	NM_000537.3	24	31	18	11	17	19	21	28	23	20	26	21
Endogenous	RERE	NM_001042681.1	659	3119	865	195	1894	500	722	537	58	431	818	434
Endogenous	RGN	NM_152869.2	704	227	49	89	698	483	179	327	109	476	337	402
Endogenous	RHOB	NM_004040.2	478	668	281	109	764	547	303	538	295	447	602	287
Endogenous	RTN1	NM_206857.1	288	1504	595	149	4718	595	184	1395	222	1341	2113	317
Endogenous	S100A4	NM_002961.2	1748	1217	62	2570	497	928	4440	1764	1125	1785	1363	1613
Endogenous	S100A9	NM_002965.2	4228	838	74	9003	709	1030	2731	3234	425	3347	1800	4490
Endogenous	SAA2	NM_030754.3	7189	51	7	1850	58	73	13	211	43	131	1384	1529
Endogenous	SAMD9	NM_017654.2	680	262	160	213	488	500	619	353	127	595	251	310
Endogenous	SAMD9L	NM_152703.2	1010	362	43	282	515	566	462	783	217	897	213	593
Endogenous	SDCCAG8	NM_006642.2	1458	1249	863	821	1941	1433	1043	1774	1044	1262	1237	1282
Endogenous	SDHA	NM_004168.1	1030	1671	808	282	1385	862	1991	929	912	928	649	573
Endogenous	SEC61G	NM_001012456.1	3433	1669	1068	968	2494	1133	5246	2036	69902	3322	1311	1718
Endogenous	SERPINA1	NM_000295.4	1552	496	45	1612	771	1437	1764	1827	255	2597	1100	691
Endogenous	SETDB2	NM_031915.1	133	189	161	140	202	103	180	136	156	122	117	161
Endogenous	SLC4A4	NM_001098484.2	1343	1495	206	257	2444	4089	350	4524	6911	844	1627	3200
Endogenous	SOCS2	NM_003877.3	901	546	159	161	279	1230	1003	471	2379	1689	245	491
Endogenous	SOX13	NM_005686.2	239	868	537	43	374	487	152	185	108	238	201	276
Endogenous	SOX2	NM_003106.2	2762	8807	7861	462	8313	3213	1999	2122	3445	2958	5494	2217
Endogenous	SOX9	NM_000346.2	3785	6939	4502	317	7271	4392	2533	6816	6494	4774	4624	1744
Endogenous	SPRY2	NM_005842.2	744	1336	858	322	1169	1025	516	3880	1708	629	568	1000
Endogenous	SPSB1	NM_025106.3	1630	421	594	188	626	313	992	1081	34	439	691	232
Endogenous	SRPX	NM_006307.2	651	678	7154	457	846	1632	8354	8082	3612	10368	621	1319
Endogenous	STEAP3	NM_001008410.1	3210	759	196	524	1163	1275	1962	2009	510	1879	594	855
Endogenous	TAGLN	NM_003186.3	2625	1277	446	2203	1002	9204	382	6341	797	961	3604	759
Endogenous	TBP	NM_003194.3	435	1061	403	225	559	286	496	427	307	205	333	239
Endogenous	TCF12	NM_207037.1	2841	4727	16355	727	8225	1931	2958	2675	2446	1426	4967	1446
Endogenous	TCL1A	NM_021966.1	16	9	6	11	5	3	10	15	11	5	7	8
Endogenous	TIMP1	NM_003254.2	34845	11589	1391	35947	5297	36214	11672	35309	5731	12620	7395	42585
Endogenous	TMEM100	NM_018286.2	269	822	801	203	2126	2258	775	277	160	479	643	1445
Endogenous	TUSC3	NM_006765.2	78	2168	1149	303	243	2856	2903	213	89	1848	456	1253
Endogenous	VEGFA	NM_001025366.1	15886	28551	4987	1402	14481	3756	5876	16248	6508	2816	6205	1687
Endogenous	WT1	NM_000378.3	32	14	18	12	8	21	48	16	8	22	14	9
Endogenous	ZNF238	NM_006352.3	89	359	25	21	279	55	77	41	26	30	51	81