ID 			T2-1087	T2-1062	T2-1396	T2-1755	T2-1449	T2-0654	T2-0787	T2-1601	T2-0882	T2-0866	T2-0865	T2-0281
Positive	POS_A(128)	ERCC_00117.1	10454	9459	7508	9919	9278	8987	9071	8866	9682	9927	8481	7839
Positive	POS_B(32)	ERCC_00112.1	2526	2263	1946	2407	2252	2161	2160	2156	2238	2406	2064	1713
Positive	POS_C(8)	ERCC_00002.1	499	429	361	464	451	392	427	393	455	484	429	379
Positive	POS_D(2)	ERCC_00092.1	184	137	129	141	147	163	131	159	156	131	134	128
Positive	POS_E(0.5)	ERCC_00035.1	24	31	22	29	20	28	26	22	16	25	32	19
Positive	POS_F(0.125)	ERCC_00034.1	52	47	44	46	42	42	38	33	41	37	35	38
Negative	NEG_A(0)	ERCC_00096.1	17	9	15	10	4	7	8	4	4	6	11	5
Negative	NEG_B(0)	ERCC_00041.1	15	23	10	11	10	15	18	5	9	14	12	6
Negative	NEG_C(0)	ERCC_00019.1	8	11	13	13	2	10	5	4	7	10	6	9
Negative	NEG_D(0)	ERCC_00076.1	8	14	14	12	6	9	15	7	21	6	10	4
Negative	NEG_E(0)	ERCC_00098.1	16	17	15	14	9	10	15	11	12	13	16	9
Negative	NEG_F(0)	ERCC_00126.1	17	21	15	16	15	21	23	6	13	15	14	14
Negative	NEG_G(0)	ERCC_00144.1	6	14	11	8	5	9	9	11	6	7	2	10
Negative	NEG_H(0)	ERCC_00154.1	8	17	30	16	10	15	20	10	19	18	5	7
Endogenous	AKR1C3	NM_003739.4	25	53	104	82	148	163	149	99	155	149	126	110
Endogenous	AKT3	NM_005465.3	4123	619	607	807	2205	616	1503	128	628	357	1185	1393
Endogenous	AQP1	NM_198098.1	117	481	196	112	1033	359	551	687	465	2682	765	1040
Endogenous	ARC	NM_015193.3	194	1614	354	648	600	243	1918	344	1252	664	2549	2168
Endogenous	AVIL	NM_006576.2	247	82	138	97	124	151	201	15	100	43	18	249
Endogenous	B2M	NM_004048.2	35227	71172	85870	59029	41456	42931	95200	38605	64126	88454	50864	29222
Endogenous	B4GALT1	NM_001497.3	1357	751	4012	536	1661	1153	1085	311	691	322	247	425
Endogenous	BEX1	NM_018476.3	14081	2691	736	347	11066	855	5791	1773	6118	2729	12290	12786
Endogenous	BMP2	NM_001200.2	94	939	85	84	310	187	64	54	162	219	120	188
Endogenous	CAB39L	NM_001031724.1	149	649	218	660	586	490	571	313	698	668	335	691
Endogenous	CAPZA2	NM_006136.2	1303	1657	3209	1519	1865	2003	2337	1667	1739	1311	1674	1151
Endogenous	CCL2	NM_002982.3	353	493	1822	362	336	4961	1569	1561	2870	414	167	552
Endogenous	CCND2	NM_001759.2	313	6926	2857	7448	7583	1653	7006	3606	7403	5113	4591	10307
Endogenous	CD163	NM_004244.4	1264	1360	2623	882	259	3197	1560	2581	929	445	119	376
Endogenous	CD44	NM_000610.3	1019	5528	11830	6065	1086	10677	13309	2401	5841	2748	576	2164
Endogenous	CDH4	NM_001794.2	189	531	101	220	99	407	1037	164	940	420	50	153
Endogenous	CDK4	NM_000075.2	3876	1437	3415	1884	2486	1432	2983	593	1271	980	3369	3269
Endogenous	CDK6	NM_001259.5	441	1702	1150	2799	2104	2906	4551	155	518	826	368	2681
Endogenous	CDKN2A	NM_000077.3	430	22	21	20	148	25	21	7	25	20	37	11
Endogenous	CDKN2B	NM_004936.3	299	47	23	50	147	50	53	6	52	36	19	24
Endogenous	CDKN2C	NM_001262.2	7392	2452	1459	2129	2046	1166	2379	661	750	1495	1592	932
Endogenous	CEP170	NM_001042404.1	7082	1843	2156	1682	4403	1576	2264	452	1351	932	2215	3219
Endogenous	CFI	NM_000204.3	527	589	2429	288	516	2666	2563	525	3909	590	427	662
Endogenous	CHI3L1	NM_001276.2	23	28166	108020	8607	1765	43059	60610	31796	43312	9696	989	3904
Endogenous	CHIC2	NM_012110.2	407	535	385	463	756	302	401	165	299	252	3813	739
Endogenous	CLEC2B	NM_005127.2	875	1027	5755	1539	323	1042	861	466	271	502	200	195
Endogenous	CLTC	NM_004859.2	3451	2881	6162	3235	3383	3964	4624	1257	3213	2044	2498	4720
Endogenous	COL1A2	NM_000089.3	135909	4428	24979	5877	41266	12447	2184	629	806	990	482	1171
Endogenous	COL6A3	NM_004369.2	14426	600	1359	400	660	858	385	82	87	64	25	189
Endogenous	CTDSP2	NM_005730.3	4495	2799	3472	2877	2414	2456	3695	503	2060	1024	895	2837
Endogenous	CYB5R2	NM_016229.3	98	120	303	115	88	141	140	21	106	75	11	45
Endogenous	CYP27B1	NM_000785.3	94	41	55	53	27	11	27	8	17	22	46	180
Endogenous	DARC	NM_002036.2	226	13	40	26	54	21	123	16	91	21	17	134
Endogenous	DDX1	NM_004939.1	3150	2203	2161	2459	2550	1665	2870	917	1683	1624	1928	3279
Endogenous	DENND2A	NM_015689.3	498	2279	2096	3622	1064	2457	5063	353	1368	1099	813	2034
Endogenous	DLL3	NM_203486.2	85	145	6	102	491	77	307	305	187	594	571	728
Endogenous	DNM3	NM_015569.3	840	103	705	690	1050	696	587	142	497	326	747	1894
Endogenous	DPYD	NM_000110.3	758	432	1678	330	583	1921	729	413	839	616	157	351
Endogenous	DYRK3	NM_003582.2	290	405	1889	552	336	426	368	149	341	154	311	287
Endogenous	DYRK4	NM_003845.1	276	56	37	36	49	45	58	30	71	38	41	94
Endogenous	E2F4	NM_001950.3	1057	733	994	534	1187	581	1274	209	688	425	682	961
Endogenous	EDNRB	NM_000115.1	461	4168	675	1373	2359	5187	3819	1609	2860	3118	909	5373
Endogenous	EGFR	NM_005228.3	544	28779	1147	5842	6538	682	53625	7907	1559	52480	174	734
Endogenous	EGFREX30	MSK_GMB2_006.1	666	2033	1246	6455	7912	681	59797	7885	1697	45951	196	695
Endogenous	EGFRVII	MSK_GMB2_005.1	8	143	23	31	35	7	269	35	21	164	13	11
Endogenous	EGFRVIII	MSK_GMB2_008.1	13	25968	12	4700	3	7	30091	9	14	2805	9	10
Endogenous	EMP3	NM_001425.2	373	1856	3628	2903	416	1205	2813	564	1373	1137	320	456
Endogenous	ENO1	NM_001428.2	16161	10656	13870	10829	6492	8343	6776	3954	7296	4590	3454	9265
Endogenous	EVI2B	NM_006495.3	150	367	483	366	400	1242	696	380	829	307	163	270
Endogenous	FABP5	NM_001444.1	2185	10930	20778	17817	8171	5802	1556	2261	4721	5035	877	2733
Endogenous	FABP7	NM_001446.3	254	21561	1004	3610	8620	13476	29869	7429	29850	24709	11464	10603
Endogenous	FAF1	NM_007051.2	4650	1273	1091	1183	1819	562	1908	462	1222	921	1194	1326
Endogenous	FAM119	NM_206914.1	268	615	401	414	256	224	549	107	161	231	123	183
Endogenous	G0S2	NM_015714.3	290	758	712	464	2114	481	427	155	636	120	210	122
Endogenous	GAPDH	NM_002046.3	131394	148542	240132	117207	60741	85891	116635	46609	70034	72974	70973	83550
Endogenous	GATM	NM_001482.2	230	6883	1282	2533	2991	2652	11373	903	5680	8842	3293	1832
Endogenous	GEN1	NM_182625.3	952	178	366	263	504	250	428	46	140	160	424	1080
Endogenous	GOLT1A	NM_198447.1	29	17	5	9	9	5	16	4	28	8	3	7
Endogenous	GPNMB	NM_001005340.1	1697	1371	24044	1320	1176	1862	1377	993	1603	938	487	1185
Endogenous	GRIA2	NM_001083620.1	1205	1561	289	4016	1373	355	239	317	1111	1644	1487	5748
Endogenous	GRIK1	NM_000830.3	19	352	20	13	121	141	462	92	645	199	35	22
Endogenous	H6PD	NM_004285.3	450	590	395	1122	608	1053	600	89	532	203	154	367
Endogenous	HGF	NM_000601.4	544	68	2887	68	1013	1204	255	64	602	79	34	49
Endogenous	HIPK3	NM_005734.2	1273	1381	1542	1610	937	1241	1621	356	1182	692	395	653
Endogenous	HOXA5	NM_019102.2	498	61	258	160	259	169	336	82	13	24	129	128
Endogenous	HP	NM_005143.3	20	130	159	59	97	236	90	207	1408	917	83	66
Endogenous	HS1BP3	NM_022460.3	547	343	1133	630	447	551	698	196	657	246	296	594
Endogenous	IGF2BP3	NM_006547.2	718	590	1144	469	600	582	1891	952	120	545	725	1535
Endogenous	IGFBP2	NM_000597.2	2515	9838	18822	6533	1548	7770	7187	2177	3092	3714	8232	11614
Endogenous	IGFBP6	NM_002178.2	503	387	2657	250	189	2146	1021	123	495	246	189	141
Endogenous	IL8	NM_000584.2	296	5900	3077	764	918	758	4858	2229	4410	1714	1679	493
Endogenous	KIAA0746	NM_015187.3	650	204	1715	78	5495	1250	2029	157	1092	129	405	2585
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	8	23	16	26	9	6	11	2	10	7	7	6
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	16	43	21	26	11	12	21	5	8	12	62	27
Endogenous	KPNA3	NM_002267.3	1189	838	752	1117	1418	1083	959	447	939	950	693	1696
Endogenous	KRIT1	NM_004912.3	1728	1404	1264	1372	1613	1329	1667	412	826	618	612	1417
Endogenous	LAPTM4A	NM_014713.4	9335	8740	12868	10291	7780	6660	11307	4326	6899	6385	4533	5987
Endogenous	LGALS3	NM_002306.2	1824	8539	14986	6067	1067	3811	8737	2171	9929	5514	522	1607
Endogenous	LOC390940	XM_001129773.1	1162	683	102	750	88	471	675	261	596	753	57	39
Endogenous	LTF	NM_002343.2	16	5201	55	30	133	22	319	16723	28288	2930	16	26
Endogenous	MDM2	NM_002392.2	2549	1190	1350	1441	963	1568	1913	636	1302	762	1082	1115
Endogenous	MDM4	NM_002393.3	731	542	215	508	505	240	589	54	195	204	575	735
Endogenous	MET	NM_000245.2	192	55	1102	230	125	1462	65	60	229	62	35	29280
Endogenous	MGMT	NM_002412.3	475	82	89	430	171	144	151	81	413	173	93	86
Endogenous	MMP7	NM_002423.3	18	44	737	90	27	86	1097	206	38	27	18	45
Endogenous	MYCN	NM_005378.4	5804	97	12	118	566	20	416	43	49	163	205	612
Endogenous	NBAS	NM_015909.2	747	923	840	1060	835	824	1377	234	640	533	563	1431
Endogenous	NCAM1	NM_000615.5	7607	3141	2291	2108	7236	1751	2223	1223	2545	2981	2191	4664
Endogenous	NF1	NM_001042492.1	2637	1558	326	1891	1862	932	2386	268	497	737	986	2621
Endogenous	NNMT	NM_006169.2	2108	2099	6299	803	668	232	769	218	807	1074	86	1489
Endogenous	NPTX2	NM_002523.1	5940	207	90	3625	335	47	1038	77	505	253	268	221
Endogenous	OLIG2	NM_005806.2	15	1911	339	1306	1219	297	6833	721	1875	1487	8851	9566
Endogenous	OMG	NM_002544.3	15	230	131	64	973	183	694	239	757	534	1122	780
Endogenous	PARK2	NM_004562.2	23	92	62	94	295	35	125	27	74	68	57	55
Endogenous	PDGFA	NM_002607.5	164	1160	512	635	145	407	1601	204	420	426	197	585
Endogenous	PDGFRA	NM_006206.3	1121	1906	544	2523	554	375	2174	163	456	1558	80338	12654
Endogenous	PDGFRAD89	MSK_GMB2_001.1	9	14	9	4	7	5	14	1	3	5	650	34
Endogenous	PDGFRADCt	MSK_GMB2_004.1	604	993	251	1373	276	212	1176	79	257	734	39107	6918
Endogenous	PDPN	NM_006474.4	706	13178	2543	14987	1278	7576	15759	3603	7394	3193	379	1402
Endogenous	PHF11	NM_001040443.1	245	462	338	612	437	521	263	112	654	375	79	234
Endogenous	PI3	NM_002638.3	6	28	185	57	13	22	253	104	656	13	7	82
Endogenous	PIK3CA	NM_006218.2	1886	1974	1040	1245	1071	873	1215	172	593	468	421	1200
Endogenous	PLA2G2A	NM_000300.2	58	757	93	18	289	11	222	12926	134	768	12	225
Endogenous	PLAT	NM_000930.3	404	774	2110	2775	584	2889	3922	664	1053	781	6654	3281
Endogenous	POLR2A	NM_000937.2	3294	2829	1870	3462	3073	3095	2830	561	2294	1028	1461	2994
Endogenous	PRKCZ	NM_002744.4	191	79	20	26	414	72	122	81	260	146	233	415
Endogenous	PROM1	NM_006017.1	34	44	134	113	192	123	5907	316	124	191	1442	1324
Endogenous	PTEN	NM_000314.3	549	1939	2831	1432	5143	1035	1870	627	1437	1267	435	999
Endogenous	PTGDS	NM_000954.5	43	370	3263	579	3134	369	1177	428	2198	942	956	1081
Endogenous	PTX3	NM_002852.3	1503	524	2331	582	57	783	2661	237	1634	365	130	412
Endogenous	RB1	NM_000321.1	745	1565	903	1478	1437	1473	1291	496	1387	956	751	1826
Endogenous	RDH14	NM_020905.3	1018	646	787	625	709	632	982	228	530	390	478	823
Endogenous	REN	NM_000537.3	25	26	29	25	20	15	20	3	16	21	15	15
Endogenous	RERE	NM_001042681.1	2969	829	530	1174	1931	875	398	227	703	382	505	2171
Endogenous	RGN	NM_152869.2	364	269	149	273	831	544	486	276	453	379	52	189
Endogenous	RHOB	NM_004040.2	1699	681	243	1326	551	375	704	273	648	576	336	642
Endogenous	RTN1	NM_206857.1	113	4085	96	102	882	771	627	245	1396	903	629	558
Endogenous	S100A4	NM_002961.2	1318	1072	3243	1275	544	2951	3391	849	2566	840	310	585
Endogenous	S100A9	NM_002965.2	703	882	1465	3802	1246	780	1789	1672	2555	1745	807	436
Endogenous	SAA2	NM_030754.3	5	38	80	44	8	17	44	438	83	977	2	24
Endogenous	SAMD9	NM_017654.2	253	329	758	333	211	719	673	122	336	169	294	312
Endogenous	SAMD9L	NM_152703.2	350	720	1377	634	349	987	1030	226	800	374	66	307
Endogenous	SDCCAG8	NM_006642.2	1580	1678	1053	1215	1876	1479	1842	605	1485	961	1013	1180
Endogenous	SDHA	NM_004168.1	3046	1902	2400	1488	1755	1034	1580	466	970	748	591	1712
Endogenous	SEC61G	NM_001012456.1	4251	89052	5262	2119	2491	2620	85392	9716	1362	1169	2006	2737
Endogenous	SERPINA1	NM_000295.4	190	323	987	305	286	993	842	569	1309	525	132	219
Endogenous	SETDB2	NM_031915.1	198	146	143	176	238	133	245	64	255	137	116	240
Endogenous	SLC4A4	NM_001098484.2	370	6344	2891	2348	1947	7271	8901	695	4406	2617	738	1723
Endogenous	SOCS2	NM_003877.3	1367	3988	1198	3288	2330	952	13781	406	674	1995	3460	607
Endogenous	SOX13	NM_005686.2	113	282	391	309	482	254	863	71	238	134	334	456
Endogenous	SOX2	NM_003106.2	2949	3878	3203	5533	9917	4461	9824	1939	3533	3093	4973	7682
Endogenous	SOX9	NM_000346.2	294	9711	3576	9447	6835	8212	17381	1956	7566	4984	3845	14246
Endogenous	SPRY2	NM_005842.2	505	3893	1712	3461	891	4478	3829	631	2894	1526	1375	2933
Endogenous	SPSB1	NM_025106.3	150	306	820	902	158	246	416	83	338	152	133	330
Endogenous	SRPX	NM_006307.2	1631	5394	9098	3087	1161	9724	211	99	773	1327	247	871
Endogenous	STEAP3	NM_001008410.1	141	1399	2987	427	334	1679	1237	420	1259	336	64	424
Endogenous	TAGLN	NM_003186.3	1179	6020	771	4012	2150	1542	1071	799	1468	2022	578	1088
Endogenous	TBP	NM_003194.3	953	524	583	505	797	201	749	159	353	340	496	622
Endogenous	TCF12	NM_207037.1	2866	4803	2642	3113	4687	5162	6182	905	2272	3222	3960	7310
Endogenous	TCL1A	NM_021966.1	12	15	12	11	8	4	15	8	9	4	16	11
Endogenous	TIMP1	NM_003254.2	8864	15350	24302	21181	4213	18271	21272	3522	22645	5436	6364	6697
Endogenous	TMEM100	NM_018286.2	178	808	2623	716	308	171	58	191	239	431	746	1000
Endogenous	TUSC3	NM_006765.2	258	172	122	117	348	121	1953	91	430	230	1301	535
Endogenous	VEGFA	NM_001025366.1	4320	52251	19635	28813	7923	9041	7061	2073	2078	5334	1642	7471
Endogenous	WT1	NM_000378.3	28	21	61	10	6	11	76	10	18	10	13	10
Endogenous	ZNF238	NM_006352.3	1664	54	46	165	318	48	93	22	82	31	87	253