ID 			T2-1455	T2-0174	T2-0190	T2-1387	T2-0812	T2-1829	T2-1097	T2-1821	T2-1460	T2-1757	T2-0187	T2-0964
Positive	POS_A(128)	ERCC_00117.1	6759	8842	8208	7713	6812	8022	9778	8561	8768	7505	6533	7456
Positive	POS_B(32)	ERCC_00112.1	1456	2049	1792	1917	1742	1896	2219	2143	2074	1756	1637	1829
Positive	POS_C(8)	ERCC_00002.1	310	379	411	375	335	370	433	373	405	319	265	364
Positive	POS_D(2)	ERCC_00092.1	106	140	158	127	117	136	158	148	150	131	113	127
Positive	POS_E(0.5)	ERCC_00035.1	14	24	26	27	20	23	29	28	15	19	18	30
Positive	POS_F(0.125)	ERCC_00034.1	30	36	40	49	29	34	41	44	46	33	35	54
Negative	NEG_A(0)	ERCC_00096.1	5	5	11	13	7	2	10	11	8	8	4	15
Negative	NEG_B(0)	ERCC_00041.1	11	8	13	13	5	11	9	17	9	17	20	18
Negative	NEG_C(0)	ERCC_00019.1	4	7	14	8	12	5	9	8	10	7	13	10
Negative	NEG_D(0)	ERCC_00076.1	7	6	8	3	6	5	7	16	11	18	9	11
Negative	NEG_E(0)	ERCC_00098.1	8	13	13	13	5	7	13	10	5	10	12	19
Negative	NEG_F(0)	ERCC_00126.1	10	18	9	10	5	12	17	19	16	6	12	22
Negative	NEG_G(0)	ERCC_00144.1	10	5	14	4	3	4	7	8	5	8	13	12
Negative	NEG_H(0)	ERCC_00154.1	3	10	31	6	10	10	15	8	12	21	11	21
Endogenous	AKR1C3	NM_003739.4	125	40	100	720	196	164	120	1254	1243	123	55	55
Endogenous	AKT3	NM_005465.3	402	839	557	798	315	98	500	3043	1635	678	333	902
Endogenous	AQP1	NM_198098.1	239	337	305	2966	1757	389	4213	54	198	4204	966	1779
Endogenous	ARC	NM_015193.3	1043	641	1099	753	194	151	517	1545	664	2705	692	1745
Endogenous	AVIL	NM_006576.2	30	158	61	42	53	18	8	112	125	74	39	7
Endogenous	B2M	NM_004048.2	57296	22498	43621	37527	71859	43988	35995	48831	70814	60238	47383	26691
Endogenous	B4GALT1	NM_001497.3	260	195	2060	617	515	145	378	368	956	488	251	299
Endogenous	BEX1	NM_018476.3	7880	6395	2391	5357	3450	1643	4063	11607	7419	2808	1446	5727
Endogenous	BMP2	NM_001200.2	287	264	362	250	123	58	171	519	2670	154	73	264
Endogenous	CAB39L	NM_001031724.1	520	520	201	791	572	326	297	1021	1094	609	242	551
Endogenous	CAPZA2	NM_006136.2	1089	849	1308	1370	1317	1045	1191	1173	1056	1799	736	678
Endogenous	CCL2	NM_002982.3	986	428	4451	1958	1121	503	435	29	1261	1023	1411	1091
Endogenous	CCND2	NM_001759.2	1238	9200	2065	5736	1833	347	9229	18864	9767	6944	4820	15684
Endogenous	CD163	NM_004244.4	954	349	2730	1513	1902	655	1591	170	557	925	627	507
Endogenous	CD44	NM_000610.3	1814	2131	7478	5405	4931	1211	6665	1312	12021	10462	4646	10972
Endogenous	CDH4	NM_001794.2	174	332	341	130	68	18	255	186	53	998	220	365
Endogenous	CDK4	NM_000075.2	1338	35141	1103	1546	1069	557	1200	4012	1536	1456	886	1616
Endogenous	CDK6	NM_001259.5	461	1020	716	406	259	88	456	941	613	816	920	466
Endogenous	CDKN2A	NM_000077.3	32	425	173	23	244	13	16	284	56	33	12	25
Endogenous	CDKN2B	NM_004936.3	26	320	141	28	330	12	21	782	359	32	17	24
Endogenous	CDKN2C	NM_001262.2	59	1694	1067	967	2016	692	1531	2147	433	1565	760	1676
Endogenous	CEP170	NM_001042404.1	1030	1870	1290	1711	660	176	1067	5391	2379	1461	843	1288
Endogenous	CFI	NM_000204.3	231	230	2399	774	804	208	388	417	1072	2396	201	97
Endogenous	CHI3L1	NM_001276.2	4898	7037	99079	3789	7901	7446	5706	110	1560	27746	32767	19507
Endogenous	CHIC2	NM_012110.2	6610	7801	397	1653	1298	471	284	1404	353	191	209	521
Endogenous	CLEC2B	NM_005127.2	312	106	745	439	752	301	319	122	567	472	624	84
Endogenous	CLTC	NM_004859.2	2025	2202	2405	3744	2171	772	2515	3625	3744	3637	1671	2783
Endogenous	COL1A2	NM_000089.3	892	715	16158	2811	545	309	1231	1318	1836	4022	514	341
Endogenous	COL6A3	NM_004369.2	101	57	2453	105	78	122	103	75	185	107	74	27
Endogenous	CTDSP2	NM_005730.3	958	6898	1525	1636	1167	212	1075	3977	3496	2303	1182	2250
Endogenous	CYB5R2	NM_016229.3	24	38	124	108	67	66	65	12	31	23	22	15
Endogenous	CYP27B1	NM_000785.3	17	280	17	30	6	17	14	35	19	27	19	11
Endogenous	DARC	NM_002036.2	40	36	72	43	24	7	52	62	22	23	13	14
Endogenous	DDX1	NM_004939.1	1359	1343	1608	1821	1323	581	1207	3099	1924	2046	976	1756
Endogenous	DENND2A	NM_015689.3	772	1099	1045	1224	820	171	1274	1130	867	2437	1160	1820
Endogenous	DLL3	NM_203486.2	640	847	262	2340	134	58	869	4768	1255	157	57	206
Endogenous	DNM3	NM_015569.3	398	543	310	880	333	85	427	3678	1768	432	153	86
Endogenous	DPYD	NM_000110.3	391	229	1777	515	847	392	270	157	454	566	517	209
Endogenous	DYRK3	NM_003582.2	147	120	406	432	217	61	189	104	179	197	136	257
Endogenous	DYRK4	NM_003845.1	29	38	40	49	52	28	28	65	57	33	18	28
Endogenous	E2F4	NM_001950.3	411	399	632	657	426	166	404	1224	756	791	412	493
Endogenous	EDNRB	NM_000115.1	1210	2399	1600	2684	1711	606	1214	456	6675	4044	2736	9165
Endogenous	EGFR	NM_005228.3	239	1104	595	2642	3423	8227	8430	727	2364	27949	58297	48793
Endogenous	EGFREX30	MSK_GMB2_006.1	271	1134	763	3051	2960	5282	9729	957	2918	33647	75316	21306
Endogenous	EGFRVII	MSK_GMB2_005.1	11	13	10	29	23	58	118	17	22	242	463	298
Endogenous	EGFRVIII	MSK_GMB2_008.1	5	18	10	6	10	10	3592	10	10	18	55	20
Endogenous	EMP3	NM_001425.2	312	236	1149	659	738	521	546	54	119	1479	943	1404
Endogenous	ENO1	NM_001428.2	3544	5992	6707	8629	3812	836	4383	5016	3698	6900	6838	9854
Endogenous	EVI2B	NM_006495.3	294	190	797	555	827	211	468	576	589	550	238	170
Endogenous	FABP5	NM_001444.1	1414	4672	5845	4730	1072	5760	3235	374	845	3616	201	158
Endogenous	FABP7	NM_001446.3	14864	25165	17105	3555	3183	4966	3778	11116	806	21004	5117	19520
Endogenous	FAF1	NM_007051.2	109	952	1054	999	945	424	911	1801	1032	1126	322	1137
Endogenous	FAM119	NM_206914.1	69	4865	165	365	76	40	213	116	267	321	129	218
Endogenous	G0S2	NM_015714.3	817	382	741	114	116	107	467	43	29	824	405	412
Endogenous	GAPDH	NM_002046.3	45907	80874	77817	203268	42952	19395	175827	88111	74565	197725	88067	220857
Endogenous	GATM	NM_001482.2	1796	1827	2123	3207	2755	3506	5084	2942	699	10198	4256	5886
Endogenous	GEN1	NM_182625.3	219	256	221	188	104	57	114	696	174	172	94	85
Endogenous	GOLT1A	NM_198447.1	2	8	5	163	6	6	10	14	4	13	16	4
Endogenous	GPNMB	NM_001005340.1	1582	694	4158	1512	2426	368	4014	421	1157	1029	343	390
Endogenous	GRIA2	NM_001083620.1	2853	2349	619	1309	420	219	454	3570	5891	1531	229	629
Endogenous	GRIK1	NM_000830.3	272	239	227	108	161	51	167	29	62	367	226	296
Endogenous	H6PD	NM_004285.3	106	127	626	326	198	40	156	544	402	310	334	584
Endogenous	HGF	NM_000601.4	61	72	357	722	413	35	52	333	1195	360	27	97
Endogenous	HIPK3	NM_005734.2	461	369	1005	876	773	289	550	744	1419	948	787	1210
Endogenous	HOXA5	NM_019102.2	129	196	140	385	45	35	249	11	11	90	130	131
Endogenous	HP	NM_005143.3	130	215	423	86	548	242	274	35	258	484	240	40
Endogenous	HS1BP3	NM_022460.3	239	183	415	480	325	122	406	358	568	383	245	337
Endogenous	IGF2BP3	NM_006547.2	369	1058	594	579	145	45	122	2024	14	504	226	252
Endogenous	IGFBP2	NM_000597.2	2428	5890	7620	4176	1001	526	4741	4870	233	12808	2082	2886
Endogenous	IGFBP6	NM_002178.2	167	68	872	197	474	94	141	120	89	278	80	50
Endogenous	IL8	NM_000584.2	3521	1290	6239	865	1668	1025	1322	68	31	1746	5159	590
Endogenous	KIAA0746	NM_015187.3	364	202	1133	203	487	122	213	117	66	196	80	416
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	13	18	11	11	6	6	10	20	9	16	17	11
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	42	43	19	26	11	7	19	44	11	32	11	17
Endogenous	KPNA3	NM_002267.3	712	872	469	1009	437	379	508	1378	1306	964	607	1210
Endogenous	KRIT1	NM_004912.3	531	607	725	1112	492	283	594	1330	1357	1153	444	502
Endogenous	LAPTM4A	NM_014713.4	4113	3750	7673	6504	6204	4497	6913	6748	7576	5384	5389	6461
Endogenous	LGALS3	NM_002306.2	1275	1675	9747	2910	6055	1609	4699	204	689	8069	1771	6016
Endogenous	LOC390940	XM_001129773.1	456	285	298	66	492	524	252	56	54	361	236	327
Endogenous	LTF	NM_002343.2	628	33	10123	1054	5578	3129	559	26	14	6114	9662	101
Endogenous	MDM2	NM_002392.2	642	35565	2149	1285	638	361	865	1496	783	1290	13330	1137
Endogenous	MDM4	NM_002393.3	140	174	211	2459	130	65	115	736	496	238	106	241
Endogenous	MET	NM_000245.2	21	54	826	804	152	31	91	13	37	199	57	19
Endogenous	MGMT	NM_002412.3	107	72	398	99	184	137	324	108	358	101	61	42
Endogenous	MMP7	NM_002423.3	40	30	856	35	135	29	15	20	12	48	16	17
Endogenous	MYCN	NM_005378.4	216	293	57	110	82	45	92	343	445	73	36	90
Endogenous	NBAS	NM_015909.2	293	575	519	697	340	170	512	1097	952	771	346	610
Endogenous	NCAM1	NM_000615.5	2921	3506	1082	4984	1911	761	4227	10697	6275	1912	2209	3925
Endogenous	NF1	NM_001042492.1	495	895	781	1229	681	168	913	2997	2087	1249	459	1640
Endogenous	NNMT	NM_006169.2	469	584	1611	687	3880	517	304	102	66	330	493	147
Endogenous	NPTX2	NM_002523.1	1034	204	749	1320	491	58	180	42	40	812	15	34
Endogenous	OLIG2	NM_005806.2	4535	2740	901	3934	453	452	1396	34914	4793	770	1835	2339
Endogenous	OMG	NM_002544.3	860	528	201	1038	586	306	1324	1742	1101	689	100	33
Endogenous	PARK2	NM_004562.2	27	65	57	121	61	26	87	53	133	103	13	71
Endogenous	PDGFA	NM_002607.5	241	258	191	244	106	104	364	380	93	2300	234	761
Endogenous	PDGFRA	NM_006206.3	48305	49505	1522	13451	4557	1700	1433	54603	1840	190	30	1960
Endogenous	PDGFRAD89	MSK_GMB2_001.1	7196	254	6	56	25	10	17	359	16	6	1	14
Endogenous	PDGFRADCt	MSK_GMB2_004.1	23483	26684	730	7441	2317	743	768	31548	1136	113	28	1098
Endogenous	PDPN	NM_006474.4	535	4242	8329	5215	2970	1130	4381	131	424	7391	6440	10112
Endogenous	PHF11	NM_001040443.1	325	133	338	197	299	272	159	96	272	272	190	235
Endogenous	PI3	NM_002638.3	142	14	289	157	65	55	123	15	6	18	638	37
Endogenous	PIK3CA	NM_006218.2	372	524	735	678	1785	112	495	1598	1094	641	392	606
Endogenous	PLA2G2A	NM_000300.2	208	107	310	236	3997	3992	25	178	8	36	92	25
Endogenous	PLAT	NM_000930.3	832	1690	1331	715	334	314	905	3527	280	1220	624	622
Endogenous	POLR2A	NM_000937.2	943	1168	1628	1881	1157	314	1334	4130	2603	2368	966	1890
Endogenous	PRKCZ	NM_002744.4	367	251	46	357	167	47	196	557	217	156	67	23
Endogenous	PROM1	NM_006017.1	498	927	177	446	279	105	105	879	116	1191	54	82
Endogenous	PTEN	NM_000314.3	709	750	1645	857	880	294	864	3442	2285	1456	712	888
Endogenous	PTGDS	NM_000954.5	722	375	761	6264	2332	514	4390	266	2332	409	2122	1760
Endogenous	PTX3	NM_002852.3	287	249	1525	527	112	214	360	93	92	1244	1305	372
Endogenous	RB1	NM_000321.1	668	702	320	818	272	249	504	1935	1307	1211	761	1110
Endogenous	RDH14	NM_020905.3	316	264	454	553	386	138	330	728	578	532	293	559
Endogenous	REN	NM_000537.3	14	20	6	36	16	7	14	21	16	27	18	12
Endogenous	RERE	NM_001042681.1	480	793	334	812	411	74	239	3335	1390	725	571	480
Endogenous	RGN	NM_152869.2	264	112	235	459	293	284	154	100	100	239	276	89
Endogenous	RHOB	NM_004040.2	124	219	494	293	232	75	304	143	411	269	130	349
Endogenous	RTN1	NM_206857.1	543	542	904	1359	1143	117	475	234	1424	504	116	2262
Endogenous	S100A4	NM_002961.2	564	282	1848	789	1233	975	856	219	377	1887	602	1018
Endogenous	S100A9	NM_002965.2	2388	509	2297	701	1951	783	544	60	518	740	701	546
Endogenous	SAA2	NM_030754.3	439	1	172	16	110	456	28	9	7	13	15	11
Endogenous	SAMD9	NM_017654.2	208	85	230	355	285	89	190	318	281	215	318	46
Endogenous	SAMD9L	NM_152703.2	156	104	395	464	367	86	197	104	476	759	669	48
Endogenous	SDCCAG8	NM_006642.2	737	692	1160	1017	904	465	1115	1739	1640	1167	606	1038
Endogenous	SDHA	NM_004168.1	502	575	654	970	346	163	715	973	1373	1024	497	733
Endogenous	SEC61G	NM_001012456.1	1753	1521	1575	2436	1187	35146	9347	1666	983	72097	52399	6897
Endogenous	SERPINA1	NM_000295.4	515	263	2108	605	891	259	507	147	533	634	423	334
Endogenous	SETDB2	NM_031915.1	94	99	149	133	167	92	80	245	200	162	68	143
Endogenous	SLC4A4	NM_001098484.2	559	626	1622	2359	1164	450	3576	90	2522	7269	1870	2850
Endogenous	SOCS2	NM_003877.3	412	750	1075	504	347	657	459	17674	1153	3541	848	897
Endogenous	SOX13	NM_005686.2	158	173	260	1070	139	25	195	1190	509	181	119	266
Endogenous	SOX2	NM_003106.2	1708	3853	2674	4551	5319	1047	2650	12393	7357	4545	3039	5801
Endogenous	SOX9	NM_000346.2	1705	7038	5148	4265	3126	928	4337	20936	5482	6939	5332	9025
Endogenous	SPRY2	NM_005842.2	589	1024	3263	769	495	190	744	1485	484	4087	1857	2039
Endogenous	SPSB1	NM_025106.3	191	193	207	519	240	18	144	552	417	177	338	896
Endogenous	SRPX	NM_006307.2	315	692	3444	1006	251	371	1162	441	262	952	759	766
Endogenous	STEAP3	NM_001008410.1	399	236	876	309	379	156	686	40	160	2046	1026	366
Endogenous	TAGLN	NM_003186.3	616	1706	4228	916	1411	1141	646	459	1052	3779	1696	3192
Endogenous	TBP	NM_003194.3	281	285	345	398	277	156	261	715	482	379	107	304
Endogenous	TCF12	NM_207037.1	2487	3593	2981	1133	1713	537	1217	18909	10098	2958	2912	6388
Endogenous	TCL1A	NM_021966.1	7	19	9	5	4	7	8	8	12	19	12	8
Endogenous	TIMP1	NM_003254.2	5447	3270	20553	5931	4882	1897	5415	1085	2873	7984	4927	6728
Endogenous	TMEM100	NM_018286.2	442	643	447	539	281	81	914	967	1390	922	104	87
Endogenous	TUSC3	NM_006765.2	885	142	174	122	134	43	61	2239	759	167	69	43
Endogenous	VEGFA	NM_001025366.1	1693	11796	9643	14399	1761	1183	13515	1408	1547	13260	5368	8733
Endogenous	WT1	NM_000378.3	10	28	41	24	5	12	18	18	2	22	20	26
Endogenous	ZNF238	NM_006352.3	38	79	60	101	29	15	21	283	243	54	18	12