ID 			T2-0413	T2-0125	T2-1385	T2-0051	T2-0164	T2-0776	T2-0789	T2-0179	T2-0086	T2-1795	T2-1447	T2-1095
Positive	POS_A(128)	ERCC_00117.1	7595	6294	8464	8913	7246	7479	7270	8038	8620	234	7225	7813
Positive	POS_B(32)	ERCC_00112.1	1777	1633	2057	2315	1762	1805	1790	2007	2103	61	1790	1916
Positive	POS_C(8)	ERCC_00002.1	382	278	374	406	354	313	370	365	380	13	342	376
Positive	POS_D(2)	ERCC_00092.1	142	118	151	123	99	127	144	140	146	6	124	132
Positive	POS_E(0.5)	ERCC_00035.1	18	17	23	27	14	14	25	32	17	1	17	27
Positive	POS_F(0.125)	ERCC_00034.1	40	11	38	52	33	35	30	33	30	1	34	35
Negative	NEG_A(0)	ERCC_00096.1	11	4	12	12	12	8	11	5	1	1	8	11
Negative	NEG_B(0)	ERCC_00041.1	11	12	14	5	4	7	6	9	11	0	10	4
Negative	NEG_C(0)	ERCC_00019.1	11	13	11	16	12	8	24	11	11	0	9	26
Negative	NEG_D(0)	ERCC_00076.1	12	13	18	10	10	11	25	8	6	2	9	14
Negative	NEG_E(0)	ERCC_00098.1	14	7	13	6	17	6	19	3	2	0	13	10
Negative	NEG_F(0)	ERCC_00126.1	14	8	14	13	9	5	5	9	3	0	15	14
Negative	NEG_G(0)	ERCC_00144.1	5	7	29	7	6	5	25	4	4	0	4	12
Negative	NEG_H(0)	ERCC_00154.1	9	10	55	9	7	10	47	15	16	1	10	23
Endogenous	AKR1C3	NM_003739.4	205	78	719	484	194	325	56	284	115	3	208	179
Endogenous	AKT3	NM_005465.3	2217	622	1006	331	533	346	550	275	106	50	2391	789
Endogenous	AQP1	NM_198098.1	251	1309	1292	52	110	2320	232	288	12	2	934	274
Endogenous	ARC	NM_015193.3	2797	2518	152	47	319	113	291	212	155	40	629	616
Endogenous	AVIL	NM_006576.2	58	140	139	47	31	394	32	32	14	6	125	89
Endogenous	B2M	NM_004048.2	30684	21338	62164	91990	55248	119224	106210	64259	30292	3568	38773	132179
Endogenous	B4GALT1	NM_001497.3	610	454	3127	1322	965	1272	1319	405	265	33	1366	1347
Endogenous	BEX1	NM_018476.3	12396	3977	1766	671	3239	1435	1113	4945	1238	266	10845	8168
Endogenous	BMP2	NM_001200.2	137	457	335	237	144	271	660	118	57	18	306	249
Endogenous	CAB39L	NM_001031724.1	454	378	1379	141	178	407	500	517	152	12	630	411
Endogenous	CAPZA2	NM_006136.2	9144	991	1551	1318	1097	1135	1218	1062	689	161	1743	1634
Endogenous	CCL2	NM_002982.3	738	776	1842	1498	980	4283	3502	1342	886	166	289	498
Endogenous	CCND2	NM_001759.2	14538	9889	1822	201	3417	6679	2667	869	727	393	7542	7492
Endogenous	CD163	NM_004244.4	951	501	9758	1275	1999	7924	5439	1082	987	46	244	9240
Endogenous	CD44	NM_000610.3	1296	4165	9920	6863	3577	7266	10932	1382	1011	203	1070	5487
Endogenous	CDH4	NM_001794.2	368	908	252	111	324	86	82	108	48	16	110	291
Endogenous	CDK4	NM_000075.2	2558	1252	1197	2054	1435	2547	1155	506	654	58	2437	1517
Endogenous	CDK6	NM_001259.5	935	765	860	570	649	986	1235	212	284	70	1959	925
Endogenous	CDKN2A	NM_000077.3	32	17	30	15	16	230	28	24	19	1	111	30
Endogenous	CDKN2B	NM_004936.3	151	37	250	24	119	315	48	51	6	1	129	47
Endogenous	CDKN2C	NM_001262.2	1266	1382	926	975	625	711	949	476	420	1	2232	1477
Endogenous	CEP170	NM_001042404.1	3221	1628	1837	696	1013	910	1157	610	310	122	4238	2094
Endogenous	CFI	NM_000204.3	312	547	3772	377	1001	1244	1498	350	585	11	459	1906
Endogenous	CHI3L1	NM_001276.2	13151	14049	262929	16371	18174	49741	280144	28464	40613	239	1743	58953
Endogenous	CHIC2	NM_012110.2	581	282	465	448	169	389	305	200	95	16	648	405
Endogenous	CLEC2B	NM_005127.2	581	241	1715	3413	812	3504	3411	679	220	18	276	873
Endogenous	CLTC	NM_004859.2	3634	2558	4656	1918	2265	2471	2709	1883	1398	243	3558	4036
Endogenous	COL1A2	NM_000089.3	2108	1254	46381	10737	12810	2927	1302	884	1053	70	31576	6856
Endogenous	COL6A3	NM_004369.2	179	136	4420	4665	1377	98	188	225	213	14	553	780
Endogenous	CTDSP2	NM_005730.3	2438	1704	3814	1521	1689	5703	2488	619	419	33	2266	2640
Endogenous	CYB5R2	NM_016229.3	99	64	290	48	141	37	151	108	20	5	103	94
Endogenous	CYP27B1	NM_000785.3	57	55	20	36	16	31	22	9	18	0	26	16
Endogenous	DARC	NM_002036.2	49	9	217	22	98	38	64	109	30	0	43	152
Endogenous	DDX1	NM_004939.1	2507	1869	2094	1237	1156	1095	1567	957	641	69	2494	2098
Endogenous	DENND2A	NM_015689.3	2006	2597	1086	282	1313	846	632	354	443	57	1146	1701
Endogenous	DLL3	NM_203486.2	330	427	22	36	9	83	30	60	7	21	414	385
Endogenous	DNM3	NM_015569.3	3272	146	348	123	182	162	94	573	101	33	1219	883
Endogenous	DPYD	NM_000110.3	471	751	2593	746	842	1657	2737	510	618	18	504	2181
Endogenous	DYRK3	NM_003582.2	279	205	354	269	213	195	451	74	89	11	338	198
Endogenous	DYRK4	NM_003845.1	42	40	67	21	76	73	31	28	27	2	44	124
Endogenous	E2F4	NM_001950.3	1092	629	955	814	530	479	491	263	243	29	1155	837
Endogenous	EDNRB	NM_000115.1	3072	2655	1133	65	814	1606	630	1350	464	84	2564	3223
Endogenous	EGFR	NM_005228.3	152	39487	1685	688	386	2599	7356	2667	267	21	7164	375
Endogenous	EGFREX30	MSK_GMB2_006.1	196	43842	1927	755	397	2948	9313	2478	237	17	8368	474
Endogenous	EGFRVII	MSK_GMB2_005.1	15	156	21	12	11	33	640	20	13	1	56	21
Endogenous	EGFRVIII	MSK_GMB2_008.1	7	1699	11	11	13	8	1725	1552	6	0	9	9
Endogenous	EMP3	NM_001425.2	377	1749	1354	3096	1681	726	2565	473	578	33	359	623
Endogenous	ENO1	NM_001428.2	8957	4931	5257	10381	3938	4905	4826	3232	3696	317	5183	3824
Endogenous	EVI2B	NM_006495.3	377	190	1256	435	707	1229	864	377	233	38	393	1422
Endogenous	FABP5	NM_001444.1	2140	3657	11652	1405	8706	6345	5348	2330	3321	45	8379	1119
Endogenous	FABP7	NM_001446.3	15598	19681	14083	678	17004	9726	16070	9626	2356	497	7320	8675
Endogenous	FAF1	NM_007051.2	1557	993	1043	935	707	588	837	753	380	10	1830	1032
Endogenous	FAM119	NM_206914.1	142	207	222	217	104	404	401	74	58	6	192	208
Endogenous	G0S2	NM_015714.3	505	370	475	427	724	2549	1852	183	276	116	1779	367
Endogenous	GAPDH	NM_002046.3	126761	65940	51945	94633	121774	95174	108185	33620	43944	4619	61819	80099
Endogenous	GATM	NM_001482.2	5326	5045	2213	163	3680	2179	1647	2945	1681	63	3176	7752
Endogenous	GEN1	NM_182625.3	775	287	326	104	107	153	134	62	59	9	438	271
Endogenous	GOLT1A	NM_198447.1	13	7	17	7	7	5	7	9	4	0	13	9
Endogenous	GPNMB	NM_001005340.1	2386	488	2649	2421	4131	3617	3060	870	954	85	1135	1327
Endogenous	GRIA2	NM_001083620.1	6938	1539	342	20	113	417	675	987	168	109	1540	2692
Endogenous	GRIK1	NM_000830.3	79	693	61	10	95	146	850	140	46	3	139	128
Endogenous	H6PD	NM_004285.3	545	458	1143	378	199	154	473	126	130	11	500	388
Endogenous	HGF	NM_000601.4	173	38	705	747	272	993	86	107	100	6	832	243
Endogenous	HIPK3	NM_005734.2	1169	736	2428	567	771	980	1430	611	246	18	929	1332
Endogenous	HOXA5	NM_019102.2	299	91	261	35	74	76	180	22	14	4	254	280
Endogenous	HP	NM_005143.3	57	49	3931	33	101	1586	1112	551	58	3	94	250
Endogenous	HS1BP3	NM_022460.3	370	275	639	368	350	381	479	182	207	16	365	555
Endogenous	IGF2BP3	NM_006547.2	1871	344	149	718	294	271	215	203	55	37	628	267
Endogenous	IGFBP2	NM_000597.2	7656	3582	6641	1605	5875	2582	4420	762	1386	212	1427	5625
Endogenous	IGFBP6	NM_002178.2	459	144	9801	3017	633	306	495	794	209	52	182	2191
Endogenous	IL8	NM_000584.2	2008	1109	2182	5606	1526	5955	28922	2250	2991	795	878	543
Endogenous	KIAA0746	NM_015187.3	1529	339	1916	149	416	514	768	195	68	30	4207	814
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	17	5	8	7	9	8	15	5	5	0	8	9
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	27	15	14	15	13	9	23	5	7	1	13	14
Endogenous	KPNA3	NM_002267.3	840	823	921	517	514	612	647	627	351	81	1347	906
Endogenous	KRIT1	NM_004912.3	1297	1014	1173	497	399	636	636	384	229	20	1597	903
Endogenous	LAPTM4A	NM_014713.4	6047	4889	13802	7916	5746	6834	8816	4097	3463	154	7492	9550
Endogenous	LGALS3	NM_002306.2	3901	5053	7223	20094	7345	4417	15703	2328	4228	186	1046	3881
Endogenous	LOC390940	XM_001129773.1	162	568	411	192	406	173	479	308	142	15	94	248
Endogenous	LTF	NM_002343.2	974	12106	1081	398	156	2391	4596	2671	234	39	115	410
Endogenous	MDM2	NM_002392.2	1601	951	1777	637	1426	603	845	625	627	102	1021	2579
Endogenous	MDM4	NM_002393.3	670	341	410	123	112	149	160	142	50	5	463	287
Endogenous	MET	NM_000245.2	19547	61	1045	2743	424	376	470	116	212	430	127	472
Endogenous	MGMT	NM_002412.3	152	55	285	69	347	262	110	293	145	5	170	460
Endogenous	MMP7	NM_002423.3	171	23	191	80	193	992	96	149	37	935	26	128
Endogenous	MYCN	NM_005378.4	577	79	24	10	30	63	41	26	7	11	412	113
Endogenous	NBAS	NM_015909.2	1136	674	910	318	375	423	609	374	224	32	844	673
Endogenous	NCAM1	NM_000615.5	7704	3970	2002	306	1012	1218	1323	1789	330	277	6743	4271
Endogenous	NF1	NM_001042492.1	2122	1156	1119	425	454	717	419	539	123	17	1810	1001
Endogenous	NNMT	NM_006169.2	138	1179	4765	3429	1684	4001	2644	536	1298	12	578	336
Endogenous	NPTX2	NM_002523.1	2932	145	156	178	580	980	155	1351	118	8	305	2116
Endogenous	OLIG2	NM_005806.2	12134	4552	206	22	1705	438	653	623	417	47	1330	3603
Endogenous	OMG	NM_002544.3	1067	153	154	13	192	107	68	762	23	4	1051	758
Endogenous	PARK2	NM_004562.2	99	81	153	19	40	71	69	44	14	4	280	90
Endogenous	PDGFA	NM_002607.5	553	546	391	131	313	441	519	225	114	14	125	389
Endogenous	PDGFRA	NM_006206.3	20539	1765	1204	1729	429	3752	2678	644	81	45	489	1227
Endogenous	PDGFRAD89	MSK_GMB2_001.1	74	9	8	10	2	14	17	7	2	0	7	6
Endogenous	PDGFRADCt	MSK_GMB2_004.1	10609	946	631	843	247	2051	1425	309	42	22	241	595
Endogenous	PDPN	NM_006474.4	958	5750	11853	882	6259	13079	14709	1664	4166	196	1475	5669
Endogenous	PHF11	NM_001040443.1	222	231	529	319	283	395	456	377	186	12	422	574
Endogenous	PI3	NM_002638.3	79	55	130	623	23	227	11282	173	1458	94	13	2142
Endogenous	PIK3CA	NM_006218.2	1137	562	1283	430	449	637	682	403	287	18	1093	969
Endogenous	PLA2G2A	NM_000300.2	20	359	1665	51	308	2965	13116	531	4	0	251	54
Endogenous	PLAT	NM_000930.3	8157	1355	1730	425	2771	684	1114	282	380	89	598	3362
Endogenous	POLR2A	NM_000937.2	3336	1640	2771	949	1331	1866	2388	805	415	96	2860	3336
Endogenous	PRKCZ	NM_002744.4	715	122	79	14	81	106	36	287	23	23	452	152
Endogenous	PROM1	NM_006017.1	1239	238	82	11	58	913	161	61	14	9	237	396
Endogenous	PTEN	NM_000314.3	2020	665	3463	635	1354	1741	1611	862	479	49	4603	2304
Endogenous	PTGDS	NM_000954.5	1663	68	51412	263	1316	332	122	3007	112	43	2925	2561
Endogenous	PTX3	NM_002852.3	502	602	1970	2239	905	958	4071	398	1188	131	44	1062
Endogenous	RB1	NM_000321.1	1116	1050	1010	404	593	704	1084	431	342	27	1258	1316
Endogenous	RDH14	NM_020905.3	579	467	1079	421	410	320	525	214	167	11	655	686
Endogenous	REN	NM_000537.3	19	17	28	8	13	12	14	14	12	2	20	19
Endogenous	RERE	NM_001042681.1	2030	613	749	260	243	307	253	268	107	45	1880	558
Endogenous	RGN	NM_152869.2	241	369	597	99	116	274	217	275	157	21	931	651
Endogenous	RHOB	NM_004040.2	371	324	663	120	367	338	434	238	99	7	339	268
Endogenous	RTN1	NM_206857.1	1007	1542	490	128	488	526	1914	925	145	44	982	365
Endogenous	S100A4	NM_002961.2	661	669	2613	28818	925	2221	2414	1030	747	25	567	1758
Endogenous	S100A9	NM_002965.2	795	361	2390	1896	1285	6932	3266	2904	1043	225	991	2740
Endogenous	SAA2	NM_030754.3	51	77	226	73	37	316	3481	781	56	21	8	270
Endogenous	SAMD9	NM_017654.2	139	154	534	614	248	472	572	126	130	5	244	724
Endogenous	SAMD9L	NM_152703.2	158	482	834	364	371	711	594	151	149	8	455	835
Endogenous	SDCCAG8	NM_006642.2	1234	1142	2224	663	659	815	1080	804	305	39	1882	1704
Endogenous	SDHA	NM_004168.1	1927	804	1541	628	455	571	744	383	410	24	1445	1146
Endogenous	SEC61G	NM_001012456.1	2909	41399	2118	3522	1573	2633	1838	8246	1174	173	2305	1744
Endogenous	SERPINA1	NM_000295.4	376	294	2593	714	498	2225	2313	428	606	27	256	2510
Endogenous	SETDB2	NM_031915.1	147	161	290	129	114	141	189	107	44	6	254	151
Endogenous	SLC4A4	NM_001098484.2	1061	3678	6364	58	2017	984	5768	1923	1285	42	1756	5491
Endogenous	SOCS2	NM_003877.3	296	3615	998	218	641	1224	756	745	149	28	2300	603
Endogenous	SOX13	NM_005686.2	300	211	540	87	213	144	211	66	57	7	387	535
Endogenous	SOX2	NM_003106.2	7695	4000	2119	544	1463	2387	2719	995	1012	86	10092	4415
Endogenous	SOX9	NM_000346.2	5014	11676	4210	768	3486	4225	7071	1546	1228	215	7101	8379
Endogenous	SPRY2	NM_005842.2	3002	1307	1766	729	1031	735	2973	985	976	44	736	2833
Endogenous	SPSB1	NM_025106.3	571	255	419	228	234	222	285	92	141	6	143	157
Endogenous	SRPX	NM_006307.2	313	1367	2896	13161	3470	2284	3509	961	2088	35	992	3145
Endogenous	STEAP3	NM_001008410.1	209	684	1954	872	495	1049	1363	209	594	51	344	1072
Endogenous	TAGLN	NM_003186.3	1781	2960	11162	311	3775	2294	1114	2406	360	115	1699	881
Endogenous	TBP	NM_003194.3	616	432	497	350	283	230	311	279	133	11	703	286
Endogenous	TCF12	NM_207037.1	5295	4336	2447	1200	1789	2194	2477	1084	1019	143	4354	8105
Endogenous	TCL1A	NM_021966.1	5	11	3	9	11	6	13	8	1	1	5	2
Endogenous	TIMP1	NM_003254.2	12932	6436	30658	24776	19644	8669	56185	12080	15261	1707	3740	36634
Endogenous	TMEM100	NM_018286.2	143	119	577	814	152	705	418	283	356	7	360	1514
Endogenous	TUSC3	NM_006765.2	845	168	980	463	289	169	70	436	43	4	404	752
Endogenous	VEGFA	NM_001025366.1	5735	16311	3826	5503	3873	4436	18595	632	2527	576	6635	3423
Endogenous	WT1	NM_000378.3	16	14	18	10	30	9	15	2	8	0	8	15
Endogenous	ZNF238	NM_006352.3	229	43	90	19	21	37	17	28	6	2	289	66