ID 			T2-1794	T2-0127	T2-0114	T2-0058	T2-0009	T2-0107	T2-0115	T2-0089	T2-0128	T2-1458	T2-1788	T2-0033
Positive	POS_A(128)	ERCC_00117.1	7351	9260	11054	11529	8671	10021	9081	8979	10187	9156	9254	9903
Positive	POS_B(32)	ERCC_00112.1	1705	2318	2574	2885	1980	2367	2055	2102	2353	2214	2256	2359
Positive	POS_C(8)	ERCC_00002.1	340	403	511	522	410	420	371	382	455	434	411	456
Positive	POS_D(2)	ERCC_00092.1	119	168	181	175	134	163	128	147	160	137	158	159
Positive	POS_E(0.5)	ERCC_00035.1	16	23	29	36	20	28	24	11	20	19	25	25
Positive	POS_F(0.125)	ERCC_00034.1	23	36	41	55	29	52	28	37	35	41	36	40
Negative	NEG_A(0)	ERCC_00096.1	8	9	6	4	8	9	7	5	3	10	6	9
Negative	NEG_B(0)	ERCC_00041.1	10	9	8	6	18	6	6	7	4	9	8	7
Negative	NEG_C(0)	ERCC_00019.1	4	5	4	3	3	7	8	3	3	4	2	14
Negative	NEG_D(0)	ERCC_00076.1	6	4	7	1	4	6	4	6	3	6	5	16
Negative	NEG_E(0)	ERCC_00098.1	9	12	14	9	5	9	12	5	10	6	7	12
Negative	NEG_F(0)	ERCC_00126.1	9	19	6	6	13	7	9	4	15	13	11	5
Negative	NEG_G(0)	ERCC_00144.1	3	5	5	6	3	12	4	6	2	6	1	20
Negative	NEG_H(0)	ERCC_00154.1	12	11	4	1	12	23	9	8	7	6	11	40
Endogenous	AKR1C3	NM_003739.4	192	208	19	898	63	280	177	56	553	912	954	131
Endogenous	AKT3	NM_005465.3	984	761	282	525	620	149	152	85	464	1067	1997	155
Endogenous	AQP1	NM_198098.1	1259	1396	25	356	654	683	97	792	170	769	505	95
Endogenous	ARC	NM_015193.3	221	540	142	231	1006	600	77	290	275	170	263	172
Endogenous	AVIL	NM_006576.2	85	123	19	25	74	41	22	10	493	42	75	50
Endogenous	B2M	NM_004048.2	45271	66196	17588	18268	27198	41487	34119	15132	30187	24304	21614	57068
Endogenous	B4GALT1	NM_001497.3	726	411	118	287	189	588	283	175	157	246	529	1598
Endogenous	BEX1	NM_018476.3	3905	3679	1503	3287	3133	477	2070	723	2497	13660	10044	245
Endogenous	BMP2	NM_001200.2	307	142	550	157	65	66	55	31	466	1116	851	259
Endogenous	CAB39L	NM_001031724.1	44	1219	74	1344	533	203	193	106	144	889	2595	111
Endogenous	CAPZA2	NM_006136.2	965	1173	355	486	615	628	647	336	771	1088	756	958
Endogenous	CCL2	NM_002982.3	1431	449	28	1036	91	2004	348	828	296	243	295	3013
Endogenous	CCND2	NM_001759.2	4582	5646	1686	802	12857	416	772	664	1100	2713	1758	591
Endogenous	CD163	NM_004244.4	4385	559	76	210	101	1175	243	268	151	127	245	4287
Endogenous	CD44	NM_000610.3	3377	3071	472	1446	1577	2912	1380	1133	688	585	2099	7542
Endogenous	CDH4	NM_001794.2	204	541	38	49	510	41	51	97	8	133	207	87
Endogenous	CDK4	NM_000075.2	1165	569	1328	415	700	761	474	211	9386	717	755	827
Endogenous	CDK6	NM_001259.5	345	574	216	99	3084	114	65	109	42	192	256	223
Endogenous	CDKN2A	NM_000077.3	540	13	132	42	8	32	13	7	198	67	38	494
Endogenous	CDKN2B	NM_004936.3	647	60	140	228	18	97	21	13	161	335	285	441
Endogenous	CDKN2C	NM_001262.2	2304	970	1030	101	1562	112	171	199	1169	201	211	753
Endogenous	CEP170	NM_001042404.1	1795	1311	792	510	1158	495	334	208	645	1686	2047	734
Endogenous	CFI	NM_000204.3	903	382	43	126	449	675	255	201	186	153	71	1698
Endogenous	CHI3L1	NM_001276.2	45391	29607	359	241	9198	101943	21910	14321	113	822	124	127090
Endogenous	CHIC2	NM_012110.2	341	279	171	150	220	128	98	61	170	229	346	159
Endogenous	CLEC2B	NM_005127.2	663	435	47	108	370	498	76	83	232	206	222	725
Endogenous	CLTC	NM_004859.2	3473	1778	1018	998	1767	1155	1225	570	849	2728	2612	1386
Endogenous	COL1A2	NM_000089.3	5896	483	106	49	696	8312	575	233	537	195	112	4660
Endogenous	COL6A3	NM_004369.2	481	40	9	11	8	1301	55	29	87	31	18	249
Endogenous	CTDSP2	NM_005730.3	2092	1613	870	692	1701	927	514	235	6656	1184	2059	1310
Endogenous	CYB5R2	NM_016229.3	59	142	11	8	27	67	44	24	7	12	53	41
Endogenous	CYP27B1	NM_000785.3	24	30	7	9	17	11	17	8	110	6	15	24
Endogenous	DARC	NM_002036.2	232	49	6	41	15	155	13	8	62	67	64	102
Endogenous	DDX1	NM_004939.1	1446	1496	814	697	1294	568	550	294	680	1673	1840	769
Endogenous	DENND2A	NM_015689.3	850	1379	259	377	3223	231	368	236	199	1059	795	224
Endogenous	DLL3	NM_203486.2	336	153	1270	265	234	28	18	55	274	2981	2681	7
Endogenous	DNM3	NM_015569.3	934	693	249	392	137	84	133	54	481	1869	2018	82
Endogenous	DPYD	NM_000110.3	1207	552	56	113	516	630	232	249	82	155	220	1900
Endogenous	DYRK3	NM_003582.2	306	106	36	65	94	112	81	78	149	95	120	421
Endogenous	DYRK4	NM_003845.1	76	58	30	27	36	71	32	14	32	17	32	30
Endogenous	E2F4	NM_001950.3	586	552	128	246	297	255	127	87	292	417	617	456
Endogenous	EDNRB	NM_000115.1	2929	3288	944	3052	5677	658	812	909	334	4645	6895	171
Endogenous	EGFR	NM_005228.3	13702	39913	953	1060	40643	424	828	3022	528	2761	3547	234
Endogenous	EGFREX30	MSK_GMB2_006.1	13567	37783	1073	1184	47508	473	810	3211	541	3070	3792	276
Endogenous	EGFRVII	MSK_GMB2_005.1	63	145	11	15	195	10	5	18	12	13	33	14
Endogenous	EGFRVIII	MSK_GMB2_008.1	10	2704	7	11	27220	9	6	4	8	6	3	4
Endogenous	EMP3	NM_001425.2	879	1250	69	69	1022	521	294	288	63	52	58	1205
Endogenous	ENO1	NM_001428.2	8084	3995	4498	1595	3013	2246	1666	1302	1134	4570	4125	6625
Endogenous	EVI2B	NM_006495.3	501	665	73	301	302	542	215	63	221	368	536	547
Endogenous	FABP5	NM_001444.1	3265	4817	185	167	1962	4781	4590	254	244	522	441	2009
Endogenous	FABP7	NM_001446.3	2678	14165	719	839	18144	1850	2340	1565	1259	2709	1186	7531
Endogenous	FAF1	NM_007051.2	1042	855	561	402	687	308	284	192	512	842	1097	659
Endogenous	FAM119	NM_206914.1	178	223	77	40	221	145	64	53	1039	72	153	134
Endogenous	G0S2	NM_015714.3	447	66	5	68	27	308	32	36	24	45	36	406
Endogenous	GAPDH	NM_002046.3	73599	42621	30492	14499	32707	29375	47659	14116	12412	47702	29646	64014
Endogenous	GATM	NM_001482.2	2530	5921	842	1318	4582	1026	3011	1596	951	2310	3372	926
Endogenous	GEN1	NM_182625.3	235	161	180	27	197	64	52	32	88	93	148	120
Endogenous	GOLT1A	NM_198447.1	9	13	3	2	8	12	18	3	4	2	10	9
Endogenous	GPNMB	NM_001005340.1	2211	1935	346	934	118	6244	1098	473	41	229	445	2093
Endogenous	GRIA2	NM_001083620.1	1320	1729	1089	810	826	209	397	197	729	2900	4541	63
Endogenous	GRIK1	NM_000830.3	70	595	6	40	466	36	116	34	21	257	193	9
Endogenous	H6PD	NM_004285.3	538	392	112	125	387	180	64	72	115	196	371	386
Endogenous	HGF	NM_000601.4	122	216	212	68	147	203	110	30	208	70	48	231
Endogenous	HIPK3	NM_005734.2	745	970	159	594	711	516	247	165	232	845	1225	639
Endogenous	HOXA5	NM_019102.2	151	39	26	6	177	49	14	16	25	8	4	75
Endogenous	HP	NM_005143.3	1707	106	20	66	60	2207	412	175	62	153	174	410
Endogenous	HS1BP3	NM_022460.3	485	281	185	148	237	228	191	100	165	260	274	247
Endogenous	IGF2BP3	NM_006547.2	424	290	425	9	184	44	77	56	140	7	12	93
Endogenous	IGFBP2	NM_000597.2	5005	1273	1930	38	2171	1098	1299	364	128	256	91	1873
Endogenous	IGFBP6	NM_002178.2	421	166	38	135	31	645	248	47	70	388	171	881
Endogenous	IL8	NM_000584.2	3270	346	57	1160	31	1321	179	358	137	41	105	2924
Endogenous	KIAA0746	NM_015187.3	508	173	18	40	99	230	318	45	37	258	125	2547
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	7	9	6	4	6	4	4	7	4	5	3	6
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	18	8	12	9	16	6	2	4	4	13	4	14
Endogenous	KPNA3	NM_002267.3	160	664	244	311	613	283	260	175	304	664	725	318
Endogenous	KRIT1	NM_004912.3	965	692	261	367	793	242	285	143	363	833	951	408
Endogenous	LAPTM4A	NM_014713.4	5766	4643	3036	2719	3772	3533	2688	1476	2442	4671	5450	4497
Endogenous	LGALS3	NM_002306.2	3730	6109	320	497	3097	3075	4664	1706	140	675	639	8096
Endogenous	LOC390940	XM_001129773.1	250	439	14	28	611	99	274	90	24	33	55	194
Endogenous	LTF	NM_002343.2	3709	11166	5	51	125	12617	36	6069	54	40	12	996
Endogenous	MDM2	NM_002392.2	954	868	285	256	632	698	788	274	307	588	623	580
Endogenous	MDM4	NM_002393.3	295	417	167	166	361	75	72	54	255	245	461	99
Endogenous	MET	NM_000245.2	282	124	15	18	13	124	218	25	16	161	92	904
Endogenous	MGMT	NM_002412.3	508	319	40	113	54	253	137	68	182	290	231	98
Endogenous	MMP7	NM_002423.3	68	19	110	29	125	217	21	8	7	24	10	478
Endogenous	MYCN	NM_005378.4	98	55	261	62	79	2	10	17	202	266	182	9
Endogenous	NBAS	NM_015909.2	594	650	288	322	566	194	216	118	285	658	938	258
Endogenous	NCAM1	NM_000615.5	2477	3912	2308	2483	2643	602	1015	597	2666	7044	10093	365
Endogenous	NF1	NM_001042492.1	1501	1251	414	473	1099	266	94	143	437	1184	1599	403
Endogenous	NNMT	NM_006169.2	1461	278	33	66	427	1269	295	299	466	75	105	2182
Endogenous	NPTX2	NM_002523.1	65	332	30	80	457	85	59	77	25	1705	528	79
Endogenous	OLIG2	NM_005806.2	1562	1500	2864	888	3417	148	466	205	1472	5250	5323	86
Endogenous	OMG	NM_002544.3	583	644	278	464	669	105	369	106	492	2258	1817	17
Endogenous	PARK2	NM_004562.2	67	103	33	47	106	40	34	11	47	123	152	23
Endogenous	PDGFA	NM_002607.5	315	550	30	39	1356	38	92	83	38	138	104	53
Endogenous	PDGFRA	NM_006206.3	4090	480	1988	193	1326	185	48	84	719	3227	3114	325
Endogenous	PDGFRAD89	MSK_GMB2_001.1	11	4	9	2	6	2	2	3	4	10	11	5
Endogenous	PDGFRADCt	MSK_GMB2_004.1	2155	253	981	88	630	92	11	27	360	1597	1577	179
Endogenous	PDPN	NM_006474.4	4239	3055	984	153	2857	3647	585	932	546	185	318	6371
Endogenous	PHF11	NM_001040443.1	113	593	36	95	534	248	199	102	90	184	231	182
Endogenous	PI3	NM_002638.3	538	32	7	2	5	1126	30	28	7	5	4	2658
Endogenous	PIK3CA	NM_006218.2	1058	691	322	400	926	243	226	108	282	811	1035	309
Endogenous	PLA2G2A	NM_000300.2	736	73	4	2	13	4586	185	528	9	9	5	265
Endogenous	PLAT	NM_000930.3	1099	316	211	42	774	316	362	161	213	103	96	388
Endogenous	POLR2A	NM_000937.2	2148	1582	842	711	1656	728	402	310	612	1694	2129	1034
Endogenous	PRKCZ	NM_002744.4	114	282	59	105	22	30	80	50	77	730	521	12
Endogenous	PROM1	NM_006017.1	366	113	265	38	141	18	25	56	77	78	88	31
Endogenous	PTEN	NM_000314.3	2129	1081	568	945	902	689	509	203	553	1706	1773	882
Endogenous	PTGDS	NM_000954.5	1255	3628	550	1415	70	2252	1592	898	868	2826	2975	870
Endogenous	PTX3	NM_002852.3	456	214	19	43	181	258	138	210	25	38	31	2776
Endogenous	RB1	NM_000321.1	321	711	324	344	839	325	235	188	219	548	683	275
Endogenous	RDH14	NM_020905.3	423	367	156	188	304	209	191	86	150	426	525	257
Endogenous	REN	NM_000537.3	14	15	8	14	8	8	14	9	8	21	16	4
Endogenous	RERE	NM_001042681.1	967	766	367	332	583	189	85	83	371	784	1205	196
Endogenous	RGN	NM_152869.2	172	631	22	77	321	244	240	106	28	207	328	86
Endogenous	RHOB	NM_004040.2	605	606	188	456	445	450	270	170	356	436	738	195
Endogenous	RTN1	NM_206857.1	847	1942	53	1163	1317	141	162	255	688	2620	2500	225
Endogenous	S100A4	NM_002961.2	1310	970	223	229	609	1164	396	249	299	154	81	2472
Endogenous	S100A9	NM_002965.2	1135	1034	71	267	78	793	500	268	1237	118	125	1369
Endogenous	SAA2	NM_030754.3	2659	23	4	6	11	412	61	33	4	2	10	199
Endogenous	SAMD9	NM_017654.2	426	265	38	147	204	121	239	78	84	89	126	197
Endogenous	SAMD9L	NM_152703.2	554	448	37	122	546	211	290	79	126	163	206	245
Endogenous	SDCCAG8	NM_006642.2	1275	1401	313	543	1008	533	479	262	623	951	1664	627
Endogenous	SDHA	NM_004168.1	1126	1271	425	516	749	312	349	187	277	1035	1435	522
Endogenous	SEC61G	NM_001012456.1	3006	18819	628	351	39364	618	727	339	542	1125	772	1438
Endogenous	SERPINA1	NM_000295.4	716	392	68	117	164	723	261	126	259	160	91	3265
Endogenous	SETDB2	NM_031915.1	68	201	32	99	117	93	54	35	62	142	261	81
Endogenous	SLC4A4	NM_001098484.2	1186	5572	154	2472	9460	712	3287	663	378	4030	4650	662
Endogenous	SOCS2	NM_003877.3	676	643	377	66	3133	286	517	221	225	269	523	237
Endogenous	SOX13	NM_005686.2	446	294	136	216	166	71	82	30	213	425	561	194
Endogenous	SOX2	NM_003106.2	5226	3365	2414	2277	3013	550	885	551	2048	3101	5110	1065
Endogenous	SOX9	NM_000346.2	3306	5737	3526	2741	7287	832	1646	869	1034	3177	7623	644
Endogenous	SPRY2	NM_005842.2	1089	1789	394	707	2846	590	495	436	190	606	983	721
Endogenous	SPSB1	NM_025106.3	351	197	135	52	180	160	35	104	234	289	292	944
Endogenous	SRPX	NM_006307.2	705	1273	549	357	1879	356	1410	186	314	568	592	1631
Endogenous	STEAP3	NM_001008410.1	570	490	72	117	595	557	326	300	131	101	118	904
Endogenous	TAGLN	NM_003186.3	2535	2201	160	275	119	2826	631	1001	258	307	348	4737
Endogenous	TBP	NM_003194.3	438	372	131	119	294	152	117	83	245	328	349	210
Endogenous	TCF12	NM_207037.1	2341	2988	2204	1813	3280	557	710	502	1061	4923	7025	1024
Endogenous	TCL1A	NM_021966.1	3	13	6	8	8	18	5	9	5	4	5	3
Endogenous	TIMP1	NM_003254.2	8609	3218	357	196	3679	20621	5723	1479	686	397	201	25779
Endogenous	TMEM100	NM_018286.2	205	97	1056	1364	485	328	600	77	1124	2932	2361	207
Endogenous	TUSC3	NM_006765.2	219	241	39	218	27	123	82	46	424	976	525	40
Endogenous	VEGFA	NM_001025366.1	9828	4105	1557	128	713	1980	1814	672	439	482	318	5879
Endogenous	WT1	NM_000378.3	13	25	8	2	9	9	8	1	9	6	14	17
Endogenous	ZNF238	NM_006352.3	135	87	32	42	34	12	15	10	80	110	298	26