ID 			T2-0021	T2-0116	T2-0046	T2-0124	T2-0075	T2-0047	T2-0003	T2-0099	T2-0060	T2-0010	T2-0028	T2-1801
Positive	POS_A(128)	ERCC_00117.1	17559	16119	13780	12032	9448	9621	12084	12356	13680	12212	10134	8832
Positive	POS_B(32)	ERCC_00112.1	4081	3643	3225	2984	2242	2431	2657	2960	3096	3037	2435	2024
Positive	POS_C(8)	ERCC_00002.1	795	712	643	548	418	435	603	570	595	559	498	390
Positive	POS_D(2)	ERCC_00092.1	321	287	247	215	168	185	228	221	226	199	166	164
Positive	POS_E(0.5)	ERCC_00035.1	36	42	43	44	30	24	30	32	34	36	22	20
Positive	POS_F(0.125)	ERCC_00034.1	65	64	59	49	32	57	54	42	60	60	45	43
Negative	NEG_A(0)	ERCC_00096.1	8	8	11	12	5	6	7	16	8	10	12	16
Negative	NEG_B(0)	ERCC_00041.1	13	16	15	11	6	9	14	12	9	13	8	15
Negative	NEG_C(0)	ERCC_00019.1	15	15	15	15	16	11	11	13	10	21	8	13
Negative	NEG_D(0)	ERCC_00076.1	8	13	7	24	8	12	12	9	5	8	9	5
Negative	NEG_E(0)	ERCC_00098.1	12	15	14	14	11	13	11	15	10	13	15	16
Negative	NEG_F(0)	ERCC_00126.1	6	28	9	8	7	14	13	10	11	21	8	22
Negative	NEG_G(0)	ERCC_00144.1	5	5	8	30	7	10	6	4	2	7	1	4
Negative	NEG_H(0)	ERCC_00154.1	11	15	15	50	28	5	10	13	11	17	7	8
Endogenous	AKR1C3	NM_003739.4	13	120	125	68	155	619	107	172	278	385	474	131
Endogenous	AKT3	NM_005465.3	63	930	608	485	506	720	707	652	513	2747	861	3142
Endogenous	AQP1	NM_198098.1	12	1400	1020	383	163	1420	1256	2443	57	566	58	3513
Endogenous	ARC	NM_015193.3	69	4937	989	751	300	207	2095	359	1073	905	2617	1254
Endogenous	AVIL	NM_006576.2	5	143	356	62	65	22	560	64	512	110	12	114
Endogenous	B2M	NM_004048.2	2563	54570	32876	45173	70817	44028	24345	48864	25356	37382	20496	38533
Endogenous	B4GALT1	NM_001497.3	15	448	173	1092	1558	711	224	1164	302	426	152	614
Endogenous	BEX1	NM_018476.3	64	5378	3187	669	1359	5839	7162	2275	3934	8929	3398	7538
Endogenous	BMP2	NM_001200.2	19	594	153	430	354	275	303	159	51	449	186	497
Endogenous	CAB39L	NM_001031724.1	13	674	371	178	176	532	441	507	411	939	104	324
Endogenous	CAPZA2	NM_006136.2	47	1211	596	1013	1060	655	1249	1191	452	2251	448	1407
Endogenous	CCL2	NM_002982.3	9	564	286	1136	640	728	179	1375	249	208	52	167
Endogenous	CCND2	NM_001759.2	343	14634	8784	2808	1590	4455	7527	2484	7813	14643	5112	6462
Endogenous	CD163	NM_004244.4	16	505	440	3133	3391	772	74	2325	366	1012	306	1013
Endogenous	CD44	NM_000610.3	111	4364	3883	8089	6702	2267	2985	5616	702	1372	753	3885
Endogenous	CDH4	NM_001794.2	29	1229	255	130	210	76	340	120	177	121	167	155
Endogenous	CDK4	NM_000075.2	74	2112	16815	818	731	1026	24290	31275	4598	3522	2093	1983
Endogenous	CDK6	NM_001259.5	68	2088	1049	1120	731	268	1129	824	132	2197	1318	526
Endogenous	CDKN2A	NM_000077.3	19	23	470	20	448	19	567	158	194	741	124	30
Endogenous	CDKN2B	NM_004936.3	6	33	482	36	1699	28	691	236	317	626	1539	89
Endogenous	CDKN2C	NM_001262.2	98	3119	1134	690	1021	785	1755	1293	742	3372	741	1744
Endogenous	CEP170	NM_001042404.1	79	2270	1758	1267	1345	1389	2136	1293	1155	5695	3051	6214
Endogenous	CFI	NM_000204.3	13	730	359	2007	2856	1410	329	4036	80	397	133	379
Endogenous	CHI3L1	NM_001276.2	373	11305	21594	167998	106720	5576	5429	25393	1563	6692	654	2502
Endogenous	CHIC2	NM_012110.2	31	482	192	252	343	262	282	384	248	585	207	363
Endogenous	CLEC2B	NM_005127.2	33	266	135	735	656	409	239	941	189	298	130	419
Endogenous	CLTC	NM_004859.2	98	3244	1571	2568	2705	2844	3040	3103	1820	3610	2146	4265
Endogenous	COL1A2	NM_000089.3	90	1963	959	5687	13293	1063	1101	14911	589	1045	618	2320
Endogenous	COL6A3	NM_004369.2	9	71	38	230	1593	350	36	1023	54	143	49	83
Endogenous	CTDSP2	NM_005730.3	76	2320	10771	1625	1528	1194	13013	2221	6045	2673	1095	2298
Endogenous	CYB5R2	NM_016229.3	11	44	22	178	58	11	50	145	28	23	16	54
Endogenous	CYP27B1	NM_000785.3	11	75	270	20	24	11	250	924	152	110	16	35
Endogenous	DARC	NM_002036.2	10	29	22	41	28	40	48	122	53	155	10	64
Endogenous	DDX1	NM_004939.1	84	2260	1121	1509	1286	1103	1436	1614	958	3511	1747	2444
Endogenous	DENND2A	NM_015689.3	125	3815	1275	862	1339	493	1492	765	576	1775	398	1199
Endogenous	DLL3	NM_203486.2	11	1442	1721	50	23	1211	1645	47	14	5076	248	1801
Endogenous	DNM3	NM_015569.3	14	367	538	280	230	549	734	315	1042	2577	284	1789
Endogenous	DPYD	NM_000110.3	25	840	283	1767	1767	450	267	1080	162	210	99	700
Endogenous	DYRK3	NM_003582.2	24	227	133	446	350	228	113	320	109	238	178	322
Endogenous	DYRK4	NM_003845.1	5	51	20	78	38	36	33	84	26	72	24	54
Endogenous	E2F4	NM_001950.3	43	853	396	794	770	406	514	784	346	1363	502	993
Endogenous	EDNRB	NM_000115.1	216	6490	3731	1062	1115	6856	2969	1570	1038	3679	241	3324
Endogenous	EGFR	NM_005228.3	2522	56153	9462	3774	803	301	19316	887	319	572	196	1443
Endogenous	EGFREX30	MSK_GMB2_006.1	3675	63652	13392	4577	1114	485	25205	1017	392	682	246	1839
Endogenous	EGFRVII	MSK_GMB2_005.1	22	238	63	37	15	9	268	13	11	18	14	23
Endogenous	EGFRVIII	MSK_GMB2_008.1	12	45	17	13	11	7	53	13	8	18	2	7
Endogenous	EMP3	NM_001425.2	35	1430	211	944	751	842	335	713	120	100	68	583
Endogenous	ENO1	NM_001428.2	188	5586	4270	4104	5133	4457	3303	3402	1829	4871	3353	7494
Endogenous	EVI2B	NM_006495.3	13	260	209	674	754	472	287	572	316	303	111	673
Endogenous	FABP5	NM_001444.1	28	5946	512	13317	5879	278	2610	2893	2040	589	256	3473
Endogenous	FABP7	NM_001446.3	945	8860	8570	15610	12317	5877	18013	4399	4640	5582	4429	8434
Endogenous	FAF1	NM_007051.2	59	1498	716	780	933	739	1007	1014	732	1641	504	1360
Endogenous	FAM119	NM_206914.1	16	401	4420	265	186	182	1538	342	411	231	273	252
Endogenous	G0S2	NM_015714.3	25	438	266	894	507	415	253	197	1083	102	102	208
Endogenous	GAPDH	NM_002046.3	3071	72462	71545	115284	47990	81509	50781	34521	36233	79706	127241	126893
Endogenous	GATM	NM_001482.2	304	11723	2120	2194	4165	4522	1632	2421	1760	2512	900	4651
Endogenous	GEN1	NM_182625.3	24	345	141	291	170	131	244	266	101	940	325	317
Endogenous	GOLT1A	NM_198447.1	7	12	6	7	13	10	18	15	10	8	5	6
Endogenous	GPNMB	NM_001005340.1	32	605	525	3024	1795	747	1193	1918	6041	836	1190	2566
Endogenous	GRIA2	NM_001083620.1	74	2942	3308	826	538	1917	2920	136	1940	8400	1250	4394
Endogenous	GRIK1	NM_000830.3	38	1237	235	255	75	37	432	144	48	52	16	375
Endogenous	H6PD	NM_004285.3	18	514	169	305	697	195	167	416	210	351	127	388
Endogenous	HGF	NM_000601.4	23	71	61	217	701	188	212	501	61	198	48	378
Endogenous	HIPK3	NM_005734.2	34	1049	583	1103	1068	513	620	1250	619	657	501	1193
Endogenous	HOXA5	NM_019102.2	7	219	38	108	197	21	199	389	7	59	40	277
Endogenous	HP	NM_005143.3	16	193	226	439	786	726	129	1271	634	187	21	465
Endogenous	HS1BP3	NM_022460.3	17	392	171	303	362	327	226	399	189	345	255	484
Endogenous	IGF2BP3	NM_006547.2	42	818	551	713	189	217	483	550	16	1419	242	1135
Endogenous	IGFBP2	NM_000597.2	272	4426	5304	6861	3235	1504	3948	2578	196	3499	3949	4061
Endogenous	IGFBP6	NM_002178.2	10	265	78	1998	270	180	145	717	157	171	115	123
Endogenous	IL8	NM_000584.2	20	237	578	9839	1435	1056	118	1588	293	526	864	578
Endogenous	KIAA0746	NM_015187.3	19	230	95	792	1019	178	308	1695	332	191	25	614
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	7	20	10	15	11	6	9	11	12	14	11	14
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	6	10	16	19	11	14	12	21	15	29	20	30
Endogenous	KPNA3	NM_002267.3	47	1085	680	505	551	847	977	581	681	1335	356	941
Endogenous	KRIT1	NM_004912.3	53	1423	665	735	1144	348	750	951	382	1666	557	1451
Endogenous	LAPTM4A	NM_014713.4	269	7492	3032	6085	6302	5369	3518	7866	3632	5010	3385	6384
Endogenous	LGALS3	NM_002306.2	150	2592	811	13092	6535	1444	1847	2297	1747	430	412	1798
Endogenous	LOC390940	XM_001129773.1	44	937	239	200	393	218	250	417	104	47	20	462
Endogenous	LTF	NM_002343.2	96	15892	61	846	2143	305	51	3854	494	18	6	430
Endogenous	MDM2	NM_002392.2	37	1063	616	1166	863	642	778	13139	2802	1430	771	1257
Endogenous	MDM4	NM_002393.3	16	569	242	229	332	177	231	266	177	981	549	434
Endogenous	MET	NM_000245.2	19	40	126	633	995	62	57	388	57	18081	21	81
Endogenous	MGMT	NM_002412.3	13	350	45	106	97	427	269	173	207	340	61	414
Endogenous	MMP7	NM_002423.3	2	18	9	3676	147	30	63	77	11	497	15	25
Endogenous	MYCN	NM_005378.4	7	221	182	51	46	151	231	97	106	663	153	272
Endogenous	NBAS	NM_015909.2	48	980	467	509	480	384	469	720	479	985	553	1002
Endogenous	NCAM1	NM_000615.5	128	6509	3878	1042	1229	2917	4726	2299	2981	6144	2583	9299
Endogenous	NF1	NM_001042492.1	62	1667	804	551	579	876	941	991	711	2497	623	1913
Endogenous	NNMT	NM_006169.2	94	1585	211	2698	2507	233	375	3650	196	549	55	546
Endogenous	NPTX2	NM_002523.1	30	306	353	151	76	798	644	181	7599	1538	15690	280
Endogenous	OLIG2	NM_005806.2	105	5736	2017	522	528	2171	4243	173	4287	11300	2733	7070
Endogenous	OMG	NM_002544.3	20	230	430	190	64	878	934	375	1296	684	103	1696
Endogenous	PARK2	NM_004562.2	5	42	64	59	67	86	66	75	43	93	80	168
Endogenous	PDGFA	NM_002607.5	47	1083	270	273	218	136	300	144	61	117	340	452
Endogenous	PDGFRA	NM_006206.3	17	2222	1787	1261	1370	4125	4028	2862	2579	16145	4794	6898
Endogenous	PDGFRAD89	MSK_GMB2_001.1	4	27	16	7	12	46	27	24	21	119	35	70
Endogenous	PDGFRADCt	MSK_GMB2_004.1	8	1275	1019	740	765	2193	2209	1679	1301	9127	2656	3800
Endogenous	PDPN	NM_006474.4	225	4090	1814	8613	7149	3444	5657	6722	1546	807	175	1882
Endogenous	PHF11	NM_001040443.1	21	564	160	534	286	198	196	361	186	148	56	269
Endogenous	PI3	NM_002638.3	9	17	8	450	134	34	5	240	6	194	21	9
Endogenous	PIK3CA	NM_006218.2	49	1044	426	623	1084	592	651	544	718	926	1147	1122
Endogenous	PLA2G2A	NM_000300.2	14	82	53	18483	126	16	8	1257	32	23	6	60
Endogenous	PLAT	NM_000930.3	63	1688	779	951	1008	846	3696	689	721	1495	387	1834
Endogenous	POLR2A	NM_000937.2	77	1948	1334	2011	1534	1034	1380	2348	1053	3880	2086	2588
Endogenous	PRKCZ	NM_002744.4	4	186	130	39	22	213	361	63	319	470	91	475
Endogenous	PROM1	NM_006017.1	9	493	685	55	45	617	308	2804	183	113	15	2140
Endogenous	PTEN	NM_000314.3	104	2233	843	1283	1719	1836	1037	1023	1137	1610	1649	2077
Endogenous	PTGDS	NM_000954.5	22	160	1245	745	296	1219	1194	1554	538	500	429	2283
Endogenous	PTX3	NM_002852.3	16	420	168	6940	450	443	238	751	56	453	310	142
Endogenous	RB1	NM_000321.1	52	1622	493	871	490	939	791	751	486	1597	995	891
Endogenous	RDH14	NM_020905.3	22	643	245	504	482	397	290	598	210	655	339	689
Endogenous	REN	NM_000537.3	14	22	20	26	19	11	15	14	22	31	16	13
Endogenous	RERE	NM_001042681.1	20	1094	666	345	508	496	850	673	654	2351	457	1093
Endogenous	RGN	NM_152869.2	24	594	147	204	363	60	260	698	209	113	32	346
Endogenous	RHOB	NM_004040.2	16	478	317	280	350	221	326	284	268	400	173	351
Endogenous	RTN1	NM_206857.1	55	2413	916	739	1612	1229	803	302	623	491	2301	1712
Endogenous	S100A4	NM_002961.2	35	672	299	1046	851	940	228	1337	373	335	269	755
Endogenous	S100A9	NM_002965.2	19	410	316	2450	510	465	141	908	186	252	242	322
Endogenous	SAA2	NM_030754.3	8	16	6	624	47	38	6	777	14	38	4	3
Endogenous	SAMD9	NM_017654.2	25	574	254	254	313	120	103	523	189	421	68	300
Endogenous	SAMD9L	NM_152703.2	47	1317	246	501	465	114	167	645	101	229	82	334
Endogenous	SDCCAG8	NM_006642.2	72	1534	690	1308	1254	961	804	1266	820	1813	1151	4618
Endogenous	SDHA	NM_004168.1	37	1237	604	724	897	494	673	691	541	1201	1031	934
Endogenous	SEC61G	NM_001012456.1	1630	35276	16899	9000	1905	867	22554	1589	547	2149	1373	1915
Endogenous	SERPINA1	NM_000295.4	11	220	308	1460	1440	823	198	707	169	336	95	366
Endogenous	SETDB2	NM_031915.1	31	201	83	126	126	126	149	141	119	189	64	167
Endogenous	SLC4A4	NM_001098484.2	281	3495	752	4490	4145	3193	1113	1381	1271	900	316	4564
Endogenous	SOCS2	NM_003877.3	341	1279	848	405	414	416	2712	2249	93	912	105	536
Endogenous	SOX13	NM_005686.2	11	207	144	199	247	236	384	179	409	665	337	397
Endogenous	SOX2	NM_003106.2	246	6872	3179	2468	2511	3031	3497	3713	1038	6068	2088	5195
Endogenous	SOX9	NM_000346.2	554	17035	7621	3823	4469	5275	10357	4647	457	11949	3575	5358
Endogenous	SPRY2	NM_005842.2	132	2822	834	1395	1563	593	1346	455	1848	1309	2496	820
Endogenous	SPSB1	NM_025106.3	26	251	153	302	413	374	127	198	221	306	84	599
Endogenous	SRPX	NM_006307.2	181	1581	969	3512	6747	587	1655	793	999	489	2310	966
Endogenous	STEAP3	NM_001008410.1	23	397	278	2055	1003	563	410	1254	431	132	270	435
Endogenous	TAGLN	NM_003186.3	50	1364	1208	5571	1306	549	783	2863	412	388	300	1195
Endogenous	TBP	NM_003194.3	55	613	253	297	422	243	231	561	208	813	373	537
Endogenous	TCF12	NM_207037.1	174	7654	3948	1304	2705	2822	2897	2321	2070	14083	3501	4059
Endogenous	TCL1A	NM_021966.1	10	15	8	7	5	7	10	24	9	18	6	14
Endogenous	TIMP1	NM_003254.2	294	5798	2226	26796	16277	6514	5114	9757	2208	3075	2566	5099
Endogenous	TMEM100	NM_018286.2	11	870	496	483	1119	533	2537	245	1179	1977	1033	1188
Endogenous	TUSC3	NM_006765.2	15	219	96	135	90	664	154	126	464	1409	1196	1371
Endogenous	VEGFA	NM_001025366.1	163	7873	14203	16169	17662	4230	1938	3004	3945	4108	6976	13295
Endogenous	WT1	NM_000378.3	12	19	17	22	8	9	25	12	12	34	20	9
Endogenous	ZNF238	NM_006352.3	9	82	85	40	84	39	83	111	43	861	119	462