ID 			T2-0074	T2-0130	T2-0055	T2-1749	T2-0957	T2-0133	T2-0126	T2-1786	T2-0106	T2-1037	T2-1745	T2-1752
Positive	POS_A(128)	ERCC_00117.1	8037	8782	9640	9597	8083	7061	8233	8456	10033	9395	9892	8922
Positive	POS_B(32)	ERCC_00112.1	1962	2217	2425	2257	1923	1687	1930	2018	2476	2273	2392	2243
Positive	POS_C(8)	ERCC_00002.1	379	429	399	398	385	335	377	376	464	456	436	452
Positive	POS_D(2)	ERCC_00092.1	145	145	171	156	121	108	140	148	157	154	143	139
Positive	POS_E(0.5)	ERCC_00035.1	29	27	23	32	18	32	22	24	24	16	21	31
Positive	POS_F(0.125)	ERCC_00034.1	36	47	34	42	42	30	35	34	40	40	40	46
Negative	NEG_A(0)	ERCC_00096.1	4	14	5	11	9	11	9	8	6	7	11	6
Negative	NEG_B(0)	ERCC_00041.1	9	9	8	15	15	8	21	11	10	9	3	12
Negative	NEG_C(0)	ERCC_00019.1	5	15	6	18	5	5	18	5	13	14	2	14
Negative	NEG_D(0)	ERCC_00076.1	6	4	4	19	4	11	9	5	13	7	12	10
Negative	NEG_E(0)	ERCC_00098.1	6	20	6	18	13	9	8	9	11	12	10	14
Negative	NEG_F(0)	ERCC_00126.1	12	12	6	18	23	20	11	19	7	12	6	17
Negative	NEG_G(0)	ERCC_00144.1	4	1	4	9	6	6	8	4	6	15	2	4
Negative	NEG_H(0)	ERCC_00154.1	7	8	14	8	7	11	6	11	7	34	5	18
Endogenous	AKR1C3	NM_003739.4	92	189	94	73	143	447	203	206	48	228	324	193
Endogenous	AKT3	NM_005465.3	802	286	270	700	1160	917	839	479	361	671	434	389
Endogenous	AQP1	NM_198098.1	213	198	37	6776	1898	9226	2143	1946	230	1602	747	2266
Endogenous	ARC	NM_015193.3	775	21	162	2762	1115	733	2031	1057	193	389	166	91
Endogenous	AVIL	NM_006576.2	1126	82	13	62	2490	110	110	52	17	63	78	62
Endogenous	B2M	NM_004048.2	22241	118774	56490	45564	56011	76114	43277	41728	79712	88683	53771	77461
Endogenous	B4GALT1	NM_001497.3	274	4537	2412	344	804	640	423	309	920	1102	735	621
Endogenous	BEX1	NM_018476.3	2644	218	492	5051	5203	3126	4440	3096	767	2252	806	2442
Endogenous	BMP2	NM_001200.2	515	109	320	315	382	74	172	212	277	408	102	107
Endogenous	CAB39L	NM_001031724.1	169	95	118	535	438	1414	463	689	115	380	688	474
Endogenous	CAPZA2	NM_006136.2	509	1208	726	1353	1107	1269	996	948	1978	1607	896	1057
Endogenous	CCL2	NM_002982.3	262	5335	1530	603	1384	1603	520	263	3550	498	700	871
Endogenous	CCND2	NM_001759.2	2466	370	469	15582	4805	4468	13005	9926	1186	5971	543	721
Endogenous	CD163	NM_004244.4	731	2006	1845	193	3993	503	549	372	1984	6516	5728	709
Endogenous	CD44	NM_000610.3	1712	4229	2374	3056	6016	4707	2178	1612	8846	11371	3370	3369
Endogenous	CDH4	NM_001794.2	62	18	40	2187	78	463	769	831	99	291	69	184
Endogenous	CDK4	NM_000075.2	13314	1681	530	2061	27232	888	1058	1626	1806	1627	602	779
Endogenous	CDK6	NM_001259.5	320	585	187	1457	772	1628	2519	717	1052	565	196	104
Endogenous	CDKN2A	NM_000077.3	366	687	331	17	544	20	12	14	19	84	48	189
Endogenous	CDKN2B	NM_004936.3	223	302	196	44	463	44	14	23	22	131	200	267
Endogenous	CDKN2C	NM_001262.2	44	1027	389	3258	1332	2019	2128	2678	1657	2138	865	1665
Endogenous	CEP170	NM_001042404.1	1239	1189	409	1851	2395	2789	1917	1435	1050	1964	1007	874
Endogenous	CFI	NM_000204.3	495	2026	1449	502	776	1062	625	216	817	2146	859	606
Endogenous	CHI3L1	NM_001276.2	3283	6717	12290	9983	11412	27892	6867	21148	17110	111434	7019	9463
Endogenous	CHIC2	NM_012110.2	2562	235	235	323	14447	237	307	243	312	357	363	247
Endogenous	CLEC2B	NM_005127.2	180	1302	1046	176	496	560	473	168	1000	738	817	270
Endogenous	CLTC	NM_004859.2	1495	1650	821	3226	2831	3194	2632	2121	2013	3413	1984	1745
Endogenous	COL1A2	NM_000089.3	1432	66721	17158	1617	2437	3217	691	847	14368	4381	5629	977
Endogenous	COL6A3	NM_004369.2	129	5568	2600	93	473	86	59	67	3092	638	788	84
Endogenous	CTDSP2	NM_005730.3	11684	1492	601	2101	34136	2136	2169	2386	1559	2313	1455	1190
Endogenous	CYB5R2	NM_016229.3	67	66	32	41	69	118	130	12	229	132	70	43
Endogenous	CYP27B1	NM_000785.3	417	29	12	47	821	30	53	28	27	14	2	7
Endogenous	DARC	NM_002036.2	43	46	25	15	58	49	21	26	13	52	209	32
Endogenous	DDX1	NM_004939.1	868	975	674	2374	2283	2347	1857	1558	1505	1723	1142	987
Endogenous	DENND2A	NM_015689.3	630	496	97	4243	832	1781	3348	1899	1195	1166	807	707
Endogenous	DLL3	NM_203486.2	745	3	13	387	2094	717	675	207	22	1517	17	59
Endogenous	DNM3	NM_015569.3	1360	173	73	79	1377	681	597	113	318	411	357	264
Endogenous	DPYD	NM_000110.3	260	1421	881	587	846	504	477	718	1472	2635	1196	577
Endogenous	DYRK3	NM_003582.2	152	262	110	173	203	265	92	145	211	468	393	162
Endogenous	DYRK4	NM_003845.1	42	122	11	34	121	51	51	24	31	84	71	51
Endogenous	E2F4	NM_001950.3	328	610	319	769	881	737	763	443	694	593	484	431
Endogenous	EDNRB	NM_000115.1	728	170	183	13411	1592	8234	6440	4354	535	1431	663	1322
Endogenous	EGFR	NM_005228.3	400	320	107	76858	1451	76648	36783	34034	15711	12699	1598	7258
Endogenous	EGFREX30	MSK_GMB2_006.1	511	362	126	94407	1657	92216	42230	41198	17512	14279	1576	8128
Endogenous	EGFRVII	MSK_GMB2_005.1	15	12	12	508	16	543	233	291	103	125	24	66
Endogenous	EGFRVIII	MSK_GMB2_008.1	8	11	8	11925	17	3745	14480	9610	10174	1282	4	13
Endogenous	EMP3	NM_001425.2	253	919	595	1695	305	730	860	551	1201	1489	475	774
Endogenous	ENO1	NM_001428.2	2303	4117	4352	7382	5708	6354	3966	2392	12065	7320	2386	2681
Endogenous	EVI2B	NM_006495.3	193	1457	350	298	949	1068	325	384	367	1147	1172	815
Endogenous	FABP5	NM_001444.1	3606	1688	857	4746	3344	883	2241	2739	3445	841	1465	6993
Endogenous	FABP7	NM_001446.3	2694	900	1059	38118	4635	7535	19437	12031	4876	1156	3039	3536
Endogenous	FAF1	NM_007051.2	79	791	411	1179	1117	1318	1014	1184	979	1094	681	833
Endogenous	FAM119	NM_206914.1	993	258	105	296	8834	280	165	205	270	409	109	120
Endogenous	G0S2	NM_015714.3	144	1192	421	491	767	642	222	478	498	844	100	246
Endogenous	GAPDH	NM_002046.3	26847	37556	30801	92782	63973	48439	52084	48860	81208	92543	25605	39074
Endogenous	GATM	NM_001482.2	1601	365	265	14357	3280	4124	6755	6283	5106	7520	1976	6186
Endogenous	GEN1	NM_182625.3	174	182	70	276	670	249	346	128	166	134	125	107
Endogenous	GOLT1A	NM_198447.1	3	5	6	12	18	9	11	7	7	125	4	8
Endogenous	GPNMB	NM_001005340.1	1676	5683	1242	559	4311	2455	592	766	2177	5283	5857	497
Endogenous	GRIA2	NM_001083620.1	3910	49	67	1796	5427	2372	2786	1694	88	1252	214	800
Endogenous	GRIK1	NM_000830.3	44	30	16	723	180	558	247	715	69	44	30	118
Endogenous	H6PD	NM_004285.3	214	430	201	456	489	735	450	204	168	803	508	175
Endogenous	HGF	NM_000601.4	167	756	303	96	478	143	110	124	219	308	313	333
Endogenous	HIPK3	NM_005734.2	404	771	453	781	1169	1203	1049	591	1293	1237	1618	637
Endogenous	HOXA5	NM_019102.2	3	16	14	106	156	452	138	42	90	217	30	67
Endogenous	HP	NM_005143.3	21	40	31	330	440	143	565	58	215	4416	1018	944
Endogenous	HS1BP3	NM_022460.3	129	330	183	391	522	698	305	270	515	761	626	297
Endogenous	IGF2BP3	NM_006547.2	524	195	72	850	1167	189	810	369	537	352	20	85
Endogenous	IGFBP2	NM_000597.2	901	1005	1672	7733	5118	2015	3698	3821	6001	3884	1545	840
Endogenous	IGFBP6	NM_002178.2	74	684	545	187	99	409	166	181	1443	533	518	192
Endogenous	IL8	NM_000584.2	212	145	6227	47	2299	178	647	666	2868	5574	655	93
Endogenous	KIAA0746	NM_015187.3	202	259	431	200	378	184	208	59	251	541	332	254
Endogenous	KIAABRAF16-11	MSK_GMB2_002.1	10	10	6	11	36	6	7	9	14	17	5	9
Endogenous	KIAABRAF16-9 15-9	MSK_GMB2_003.1	32	15	10	12	66	7	7	13	12	19	14	2
Endogenous	KPNA3	NM_002267.3	574	428	292	1264	975	959	938	659	487	566	462	495
Endogenous	KRIT1	NM_004912.3	558	711	219	996	1298	1278	1225	710	872	881	794	487
Endogenous	LAPTM4A	NM_014713.4	1322	7841	5735	7098	5277	9712	6132	6138	7852	10105	6643	4523
Endogenous	LGALS3	NM_002306.2	1045	3883	4045	5741	1910	1977	1890	3246	23330	10248	1658	2080
Endogenous	LOC390940	XM_001129773.1	172	197	107	846	278	299	533	323	365	485	188	530
Endogenous	LTF	NM_002343.2	141	47	60	217	1062	6004	1364	145	863	64862	12969	26301
Endogenous	MDM2	NM_002392.2	671	957	231	1145	57447	924	1552	1072	492	1144	1379	1252
Endogenous	MDM4	NM_002393.3	273	163	65	376	377	464	483	379	171	3071	130	184
Endogenous	MET	NM_000245.2	396	1129	436	21	609	80	177	39	2187	505	126	98
Endogenous	MGMT	NM_002412.3	279	292	295	402	270	298	259	281	311	323	413	186
Endogenous	MMP7	NM_002423.3	8	91	786	17	50	10	12	33	101	109	24	820
Endogenous	MYCN	NM_005378.4	79	17	3	129	530	188	111	110	47	152	20	42
Endogenous	NBAS	NM_015909.2	354	429	182	822	994	882	704	574	455	761	520	330
Endogenous	NCAM1	NM_000615.5	3810	180	357	4480	8774	4886	3353	2932	1537	5306	1441	1922
Endogenous	NF1	NM_001042492.1	761	588	98	1422	1318	1262	1525	870	533	1248	712	589
Endogenous	NNMT	NM_006169.2	223	690	3629	112	3053	2471	828	1060	3679	344	1194	4196
Endogenous	NPTX2	NM_002523.1	145	218	368	193	350	1133	515	1347	175	323	413	3180
Endogenous	OLIG2	NM_005806.2	4327	39	27	3290	4620	2067	4472	2803	404	2006	220	500
Endogenous	OMG	NM_002544.3	688	26	19	273	1906	887	921	290	32	830	341	409
Endogenous	PARK2	NM_004562.2	46	22	17	118	94	133	75	73	26	49	54	54
Endogenous	PDGFA	NM_002607.5	207	48	80	1031	402	694	276	938	466	392	86	236
Endogenous	PDGFRA	NM_006206.3	27681	1979	1248	2374	53788	995	1094	893	470	2182	948	741
Endogenous	PDGFRAD89	MSK_GMB2_001.1	114	4	4	20	173	11	12	7	5	9	8	7
Endogenous	PDGFRADCt	MSK_GMB2_004.1	14798	1006	622	1207	28227	581	645	507	232	1237	628	369
Endogenous	PDPN	NM_006474.4	2173	1851	2534	7800	4902	3961	3559	3314	5665	4577	1567	2750
Endogenous	PHF11	NM_001040443.1	200	477	170	213	327	556	400	257	319	251	360	424
Endogenous	PI3	NM_002638.3	10	23	354	11	7	10	93	13	131	158	25	7
Endogenous	PIK3CA	NM_006218.2	565	382	343	487	655	630	842	659	633	757	659	324
Endogenous	PLA2G2A	NM_000300.2	112	35	35	58	873	35	211	190	473	1048	642	1034
Endogenous	PLAT	NM_000930.3	540	496	1451	1676	794	663	2215	889	562	532	705	380
Endogenous	POLR2A	NM_000937.2	1093	1172	473	1911	2509	2527	1955	1475	1271	2299	1807	1062
Endogenous	PRKCZ	NM_002744.4	232	27	27	77	333	178	147	109	14	112	66	180
Endogenous	PROM1	NM_006017.1	388	36	18	924	1939	357	301	192	107	354	461	518
Endogenous	PTEN	NM_000314.3	862	1266	774	1519	2017	1392	1404	564	1085	1278	1048	769
Endogenous	PTGDS	NM_000954.5	2135	390	1479	136	2746	13651	377	311	825	5704	5331	1402
Endogenous	PTX3	NM_002852.3	100	169	1101	457	368	94	438	175	1885	979	91	67
Endogenous	RB1	NM_000321.1	463	524	162	1858	946	1136	1223	1240	786	885	585	349
Endogenous	RDH14	NM_020905.3	140	397	228	522	588	729	480	389	355	648	419	381
Endogenous	REN	NM_000537.3	12	15	7	19	32	17	13	8	14	17	17	11
Endogenous	RERE	NM_001042681.1	599	383	185	727	1156	1106	885	291	321	744	596	315
Endogenous	RGN	NM_152869.2	210	67	43	446	407	603	430	329	132	201	446	481
Endogenous	RHOB	NM_004040.2	207	85	188	384	772	387	410	403	112	418	393	236
Endogenous	RTN1	NM_206857.1	280	412	191	2331	3279	966	1474	2267	120	455	587	793
Endogenous	S100A4	NM_002961.2	541	3353	2627	689	659	1063	369	662	4225	1340	583	578
Endogenous	S100A9	NM_002965.2	282	784	1625	64	2057	164	612	186	1380	2754	1474	1525
Endogenous	SAA2	NM_030754.3	8	7	27	11	12	11	19	11	132	327	1299	88
Endogenous	SAMD9	NM_017654.2	143	620	148	189	331	815	473	279	411	389	309	425
Endogenous	SAMD9L	NM_152703.2	138	1194	114	508	278	1761	689	337	650	532	484	470
Endogenous	SDCCAG8	NM_006642.2	630	857	364	1203	1475	2413	1349	921	924	1503	1511	1043
Endogenous	SDHA	NM_004168.1	534	763	284	1010	1094	1326	924	652	732	767	661	470
Endogenous	SEC61G	NM_001012456.1	1112	2095	1127	45336	1319	35759	65473	19422	3294	1658	845	5549
Endogenous	SERPINA1	NM_000295.4	243	1473	732	219	1065	628	320	240	1069	1195	533	1041
Endogenous	SETDB2	NM_031915.1	92	198	73	144	232	203	150	107	83	128	146	105
Endogenous	SLC4A4	NM_001098484.2	304	67	138	7980	1081	3984	7306	3581	1428	2880	820	1269
Endogenous	SOCS2	NM_003877.3	207	1895	227	2930	394	1625	3119	2344	823	780	433	2339
Endogenous	SOX13	NM_005686.2	263	77	60	322	272	364	400	267	198	2394	173	187
Endogenous	SOX2	NM_003106.2	3041	466	281	6160	3138	4096	3823	4308	3054	6257	3252	2513
Endogenous	SOX9	NM_000346.2	1219	593	474	11491	3974	7095	9779	11357	3569	8001	3695	3161
Endogenous	SPRY2	NM_005842.2	488	410	389	2640	1106	1836	2255	1953	1180	2054	421	600
Endogenous	SPSB1	NM_025106.3	206	241	290	139	405	362	223	92	148	529	157	160
Endogenous	SRPX	NM_006307.2	929	3897	2624	2552	823	1271	1765	3272	6356	891	257	711
Endogenous	STEAP3	NM_001008410.1	182	417	735	828	1152	2788	729	1159	2206	2321	986	391
Endogenous	TAGLN	NM_003186.3	701	2126	3608	1374	2087	420	532	615	812	6096	1325	785
Endogenous	TBP	NM_003194.3	241	218	156	444	500	437	414	298	235	261	279	257
Endogenous	TCF12	NM_207037.1	4286	2190	649	6976	7534	3863	5514	3895	2448	4233	1414	1267
Endogenous	TCL1A	NM_021966.1	3	11	4	11	9	10	13	3	9	9	8	9
Endogenous	TIMP1	NM_003254.2	2845	10357	21777	6763	3914	2951	3594	6305	9769	7465	4930	4192
Endogenous	TMEM100	NM_018286.2	371	120	110	271	1048	237	757	524	523	404	100	223
Endogenous	TUSC3	NM_006765.2	81	869	493	210	100	245	178	158	46	86	111	257
Endogenous	VEGFA	NM_001025366.1	2636	571	2344	5285	18839	814	2506	9733	7180	10293	260	450
Endogenous	WT1	NM_000378.3	6	44	21	19	28	8	27	11	10	15	12	5
Endogenous	ZNF238	NM_006352.3	170	61	16	35	329	120	72	30	22	44	93	24