Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Comment[Alternate ID]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Scan Name	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[QC Warning]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAB-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAB-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAB-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAB-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAB-01A-01R.indel.vcf	3			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01R	RNA	EFO	SRS600864	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01R A33639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33639	SRX535049	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAB-01A-01R A33639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33639.fastq	SRR1797001	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1797001/SRR1797001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274476	@dbgap@:reads/SRP012006/SRS600864/SRX535049/SRR1274476/SRR1274476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAC-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAC-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAC-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAC-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAC-01A-01R.indel.vcf	3			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01R	RNA	EFO	SRS600898	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01R A33634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33634	SRX535063	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAC-01A-01R A33634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33634.fastq	SRR1797054	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1797054/SRR1797054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274477	@dbgap@:reads/SRP012006/SRS600898/SRX535063/SRR1274477/SRR1274477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAH-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAH-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAH-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAH-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAH-01A-01R.indel.vcf	3			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01R	RNA	EFO	SRS600108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01R A33490 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33490	SRX541745	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-CAAAAH-01A-01R A33490 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33490.fastq	SRR1796961	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1796961/SRR1796961.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33490_1_lane_dupsFlagged.bam	SRR1285623	@dbgap@:reads/SRP012006/SRS600108/SRX541745/SRR1285623/SRR1285623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAH-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAJ-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAJ-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAJ-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAJ-01A-01R.indel.vcf	3			
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01R	RNA	EFO	SRS600861	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01R A33640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33640	SRX535040	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAJ-01A-01R A33640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2174-1./A33640.fastq	SRR1796983	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1796983/SRR1796983.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274432	@dbgap@:reads/SRP012006/SRS600861/SRX535040/SRR1274432/SRR1274432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAL-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAL-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAL-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAL-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAL-01A-01R.indel.vcf	3			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01R	RNA	EFO	SRS600123	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01R A33521 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33521	SRX535044	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAL-01A-01R A33521 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33521.fastq	SRR1796963	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1796963/SRR1796963.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274456	@dbgap@:reads/SRP012006/SRS600123/SRX535044/SRR1274456/SRR1274456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAM-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAM-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAM-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAM-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAM-01A-01R.indel.vcf	3			
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01R	RNA	EFO	SRS600880	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01R A33641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33641	SRX535080	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-CAAAAM-01A-01R A33641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33641.fastq	SRR1797038	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1797038/SRR1797038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274455	@dbgap@:reads/SRP012006/SRS600880/SRX535080/SRR1274455/SRR1274455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAM-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAM-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAO-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAO-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAO-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAO-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAO-01A-01R.indel.vcf	3			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01R	RNA	EFO	SRS600093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01R A33522 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33522	SRX541707	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAO-01A-01R A33522 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33522.fastq	SRR1796997	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1796997/SRR1796997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285632	@dbgap@:reads/SRP012006/SRS600093/SRX541707/SRR1285632/SRR1285632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAO-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAO-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAP-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAP-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAP-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAP-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAP-01A-01R.indel.vcf	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01R	RNA	EFO	SRS600167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01R A33547 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33547	SRX535043	"RNA-Seq analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAP-01A-01R A33547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33547.fastq	SRR1796950	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1796950/SRR1796950.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274460	@dbgap@:reads/SRP012006/SRS600167/SRX535043/SRR1274460/SRR1274460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-01A-01R.indel.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33635.fastq	SRR1784861	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784861/SRR1784861.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAQ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAQ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-01A-01R.indel.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01R	RNA	EFO	SRS600878	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01R A33635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202	A33635	SRX567384	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-CAAAAQ-01A-01R A33635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33635.fastq	SRR1784862	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1784862/SRR1784862.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33635_2_lanes_dupsFlagged.bam	SRR1329251	@dbgap@:reads/SRP012006/SRS600878/SRX567384/SRR1329251/SRR1329251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAQ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAQ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-11A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-11A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAQ-11A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-11A-01R.fusion.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAQ-11A-01R.indel.vcf	3			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01R	RNA	EFO	SRS601888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-11A-01R A34696 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34696	SRX541748	"RNA-Seq analysis of normal sample TARGET-50-CAAAAQ-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAQ-11A-01R A34696 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34696.fastq	SRR1796986	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1796986/SRR1796986.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34696_1_lane_dupsFlagged.bam	SRR1285645	@dbgap@:reads/SRP012006/SRS601888/SRX541748/SRR1285645/SRR1285645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAQ-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAQ-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAR-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAR-01A-01R.indel.vcf	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01R	RNA	EFO	SRS600109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01R A33548 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33548	SRX535064	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-CAAAAR-01A-01R A33548 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33548.fastq	SRR1797006	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1797006/SRR1797006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274446	@dbgap@:reads/SRP012006/SRS600109/SRX535064/SRR1274446/SRR1274446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAR-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAR-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-11A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-11A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAR-11A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAR-11A-01R.fusion.vcf	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAR-11A-01R.indel.vcf	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01R	RNA	EFO	SRS601893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-11A-01R A34694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34694	SRX541731	"RNA-Seq analysis of normal sample TARGET-50-CAAAAR-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAR-11A-01R A34694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34694.fastq	SRR1796973	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1796973/SRR1796973.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34694_1_lane_dupsFlagged.bam	SRR1285662	@dbgap@:reads/SRP012006/SRS601893/SRX541731/SRR1285662/SRR1285662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAR-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAR-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAS-01A-01R.exon.quantification.txt	3			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAS-01A-01R.gene.quantification.txt	3			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-CAAAAS-01A-01R.isoform.quantification.txt	3			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAS-01A-01R.fusion.vcf	3			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-CAAAAS-01A-01R.indel.vcf	3			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01R	RNA	EFO	SRS600860	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01R A33642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33642	SRX535039	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-CAAAAS-01A-01R A33642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33642.fastq	SRR1796942	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1796942/SRR1796942.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274437	@dbgap@:reads/SRP012006/SRS600860/SRX535039/SRR1274437/SRR1274437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-CAAAAS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-CAAAAS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADXAY-01A-01R.exon.quantification.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADXAY-01A-01R.gene.quantification.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADXAY-01A-01R.isoform.quantification.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PADXAY-01A-01R.fusion.vcf	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PADXAY-01A-01R.indel.vcf	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01R	RNA	EFO	SRS600149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-01R A35278 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35278	SRX567382	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PADXAY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PADXAY-01A-01R A35278 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2735-1./A35278.fastq	SRR1796946	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1796946/SRR1796946.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed percentage < 70%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35278_1_lane_dupsFlagged.bam	SRR1329252	@dbgap@:reads/SRP012006/SRS600149/SRX567382/SRR1329252/SRR1329252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PADXAY-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PADXAY-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADZUB-01A-01R.exon.quantification.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADZUB-01A-01R.gene.quantification.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PADZUB-01A-01R.isoform.quantification.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PADZUB-01A-01R.fusion.vcf	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PADZUB-01A-01R.indel.vcf	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01R	RNA	EFO	SRS600870	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-01R A33568 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33568	SRX535061	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PADZUB-01A-01R A33568 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33568.fastq	SRR1796998	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1796998/SRR1796998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274457	@dbgap@:reads/SRP012006/SRS600870/SRX535061/SRR1274457/SRR1274457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PADZUB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PADZUB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEAFB-01A-01R.exon.quantification.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEAFB-01A-01R.gene.quantification.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEAFB-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAEAFB-01A-01R.fusion.vcf	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAEAFB-01A-01R.indel.vcf	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01R	RNA	EFO	SRS600120	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-01R A33515 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33515	SRX541732	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEAFB-01A-01R A33515 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33515.fastq	SRR1797035	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1797035/SRR1797035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285667	@dbgap@:reads/SRP012006/SRS600120/SRX541732/SRR1285667/SRR1285667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAEAFB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAEAFB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEBXA-01A-01R.exon.quantification.txt	3			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEBXA-01A-01R.gene.quantification.txt	3			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAEBXA-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAEBXA-01A-01R.fusion.vcf	3			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAEBXA-01A-01R.indel.vcf	3			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01R	RNA	EFO	SRS600164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01R A33529 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33529	SRX541709	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAEBXA-01A-01R A33529 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33529.fastq	SRR1810803	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1810803/SRR1810803.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285641	@dbgap@:reads/SRP012006/SRS600164/SRX541709/SRR1285641/SRR1285641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAEBXA-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAEBXA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAECJB-01A-01R.exon.quantification.txt	3			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAECJB-01A-01R.gene.quantification.txt	3			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAECJB-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAECJB-01A-01R.fusion.vcf	3			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAECJB-01A-01R.indel.vcf	3			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01R	RNA	EFO	SRS600166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01R A33567 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33567	SRX535102	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAECJB-01A-01R A33567 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33567.fastq	SRR1796937	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1796937/SRR1796937.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274471	@dbgap@:reads/SRP012006/SRS600166/SRX535102/SRR1274471/SRR1274471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAECJB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAECJB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLIP-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLIP-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLIP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLIP-01A-01R.fusion.vcf	3			
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLIP-01A-01R.indel.vcf	3			
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-01R	RNA	EFO	SRS600112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-01R A33502 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33502	SRX541717	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLIP-01A-01R A33502 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33502.fastq	SRR1796995	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1796995/SRR1796995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285625	@dbgap@:reads/SRP012006/SRS600112/SRX541717/SRR1285625/SRR1285625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLIP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLIP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLKC-01A-01R.fusion.vcf	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLKC-01A-01R.indel.vcf	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01R	RNA	EFO	SRS600097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-01R A33503 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33503	SRX541746	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKC-01A-01R A33503 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33503.fastq	SRR1797017	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1797017/SRR1797017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285631	@dbgap@:reads/SRP012006/SRS600097/SRX541746/SRR1285631/SRR1285631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLKC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLKC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKR-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKR-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLKR-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLKR-01A-01R.fusion.vcf	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLKR-01A-01R.indel.vcf	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01R	RNA	EFO	SRS600147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-01R A33516 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33516	SRX541737	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLKR-01A-01R A33516 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33516.fastq	SRR1796974	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1796974/SRR1796974.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285636	@dbgap@:reads/SRP012006/SRS600147/SRX541737/SRR1285636/SRR1285636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLKR-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLKR-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLLF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLLF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLLF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLLF-01A-01R.fusion.vcf	3			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLLF-01A-01R.indel.vcf	3			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01R	RNA	EFO	SRS600115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-01R A33500 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33500	SRX541716	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLLF-01A-01R A33500 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33500.fastq	SRR1797022	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1797022/SRR1797022.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285666	@dbgap@:reads/SRP012006/SRS600115/SRX541716/SRR1285666/SRR1285666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLLF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLLF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLNJ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLNJ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLNJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLNJ-01A-01R.fusion.vcf	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLNJ-01A-01R.indel.vcf	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01R	RNA	EFO	SRS600874	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01R A33636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33636	SRX535051	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLNJ-01A-01R A33636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33636.fastq	SRR1797004	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1797004/SRR1797004.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274453	@dbgap@:reads/SRP012006/SRS600874/SRX535051/SRR1274453/SRR1274453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLNJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLNJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLPX-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLPX-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLPX-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLPX-01A-01R.fusion.vcf	3			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLPX-01A-01R.indel.vcf	3			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01R	RNA	EFO	SRS600134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-01R A33517 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33517	SRX541699	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLPX-01A-01R A33517 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33517.fastq	SRR1796960	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1796960/SRR1796960.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285622	@dbgap@:reads/SRP012006/SRS600134/SRX541699/SRR1285622/SRR1285622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLPX-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLPX-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLSP-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLSP-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLSP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLSP-01A-01R.fusion.vcf	3			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLSP-01A-01R.indel.vcf	3			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01R	RNA	EFO	SRS600902	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-01R A33671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33671	SRX535106	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJLSP-01A-01R A33671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2160-1./A33671.fastq	SRR1797045	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1797045/SRR1797045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_8_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274428	@dbgap@:reads/SRP012006/SRS600902/SRX535106/SRR1274428/SRR1274428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLSP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLSP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTH-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTH-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTH-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLTH-01A-01R.fusion.vcf	3			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLTH-01A-01R.indel.vcf	3			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01R	RNA	EFO	SRS600888	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01R A33651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33651	SRX535058	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJLTH-01A-01R A33651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33651.fastq	SRR1797020	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1797020/SRR1797020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274420	@dbgap@:reads/SRP012006/SRS600888/SRX535058/SRR1274420/SRR1274420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLTH-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLTH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTI-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTI-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLTI-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLTI-01A-01R.fusion.vcf	3			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLTI-01A-01R.indel.vcf	3			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01R	RNA	EFO	SRS600153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-01R A33518 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33518	SRX535050	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJLTI-01A-01R A33518 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33518.fastq	SRR1797023	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1797023/SRR1797023.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274426	@dbgap@:reads/SRP012006/SRS600153/SRX535050/SRR1274426/SRR1274426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLTI-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLTI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLUJ-06A-01R.exon.quantification.txt	3			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLUJ-06A-01R.gene.quantification.txt	3			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLUJ-06A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLUJ-06A-01R.fusion.vcf	3			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLUJ-06A-01R.indel.vcf	3			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01R	RNA	EFO	SRS600114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-01R A33519 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33519	SRX541710	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJLUJ-06A-01R A33519 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33519.fastq	SRR1797029	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1797029/SRR1797029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285637	@dbgap@:reads/SRP012006/SRS600114/SRX541710/SRR1285637/SRR1285637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLUJ-06A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLUJ-06A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLWT-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLWT-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJLWT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLWT-01A-01R.fusion.vcf	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJLWT-01A-01R.indel.vcf	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01R	RNA	EFO	SRS600890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-01R A33569 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33569	SRX541711	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJLWT-01A-01R A33569 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33569.fastq	SRR1797010	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1797010/SRR1797010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285647	@dbgap@:reads/SRP012006/SRS600890/SRX541711/SRR1285647/SRR1285647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJLWT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJLWT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEL-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEL-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEL-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEL-01A-01R.fusion.vcf	3			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEL-01A-01R.indel.vcf	3			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01R	RNA	EFO	SRS600883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01R A33570 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33570	SRX535066	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEL-01A-01R A33570 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33570.fastq	SRR1797048	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1797048/SRR1797048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274430	@dbgap@:reads/SRP012006/SRS600883/SRX535066/SRR1274430/SRR1274430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMEL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMEL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEN-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEN-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEN-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEN-01A-01R.fusion.vcf	3			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEN-01A-01R.indel.vcf	3			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01R	RNA	EFO	SRS600162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01R A33530 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33530	SRX541698	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMEN-01A-01R A33530 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33530.fastq	SRR1797055	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1797055/SRR1797055.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285656	@dbgap@:reads/SRP012006/SRS600162/SRX541698/SRR1285656/SRR1285656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMEN-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMEN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEP-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEP-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMEP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEP-01A-01R.fusion.vcf	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMEP-01A-01R.indel.vcf	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01R	RNA	EFO	SRS600145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01R A33523 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33523	SRX535052	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMEP-01A-01R A33523 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33523.fastq	SRR1797000	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1797000/SRR1797000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274438	@dbgap@:reads/SRP012006/SRS600145/SRX535052/SRR1274438/SRR1274438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMEP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMEP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMFU-01A-01R.fusion.vcf	3			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMFU-01A-01R.indel.vcf	3			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01R	RNA	EFO	SRS600098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-01R A33491 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33491	SRX541740	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMFU-01A-01R A33491 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33491.fastq	SRR1796956	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1796956/SRR1796956.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285618	@dbgap@:reads/SRP012006/SRS600098/SRX541740/SRR1285618/SRR1285618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMFU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMFU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFY-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFY-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMFY-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMFY-01A-01R.fusion.vcf	3			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMFY-01A-01R.indel.vcf	3			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01R	RNA	EFO	SRS600868	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01R A33652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33652	SRX535074	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMFY-01A-01R A33652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33652.fastq	SRR1796968	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1796968/SRR1796968.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274461	@dbgap@:reads/SRP012006/SRS600868/SRX535074/SRR1274461/SRR1274461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMFY-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMFY-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMIZ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMIZ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMIZ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMIZ-01A-01R.fusion.vcf	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMIZ-01A-01R.indel.vcf	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01R	RNA	EFO	SRS600144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-01R A33520 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33520	SRX541714	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMIZ-01A-01R A33520 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33520.fastq	SRR1797019	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1797019/SRR1797019.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285654	@dbgap@:reads/SRP012006/SRS600144/SRX541714/SRR1285654/SRR1285654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMIZ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMIZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMJT-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMJT-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMJT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMJT-01A-01R.fusion.vcf	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMJT-01A-01R.indel.vcf	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01R	RNA	EFO	SRS600137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-01R A33524 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33524	SRX535094	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMJT-01A-01R A33524 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33524.fastq	SRR1797059	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1797059/SRR1797059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274484	@dbgap@:reads/SRP012006/SRS600137/SRX535094/SRR1274484/SRR1274484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMJT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMJT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKI-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKI-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKI-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKI-01A-01R.fusion.vcf	3			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKI-01A-01R.indel.vcf	3			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01R	RNA	EFO	SRS600154	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-01R A33492 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33492	SRX541742	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMKI-01A-01R A33492 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33492.fastq	SRR1797003	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1797003/SRR1797003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285649	@dbgap@:reads/SRP012006/SRS600154/SRX541742/SRR1285649/SRR1285649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMKI-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMKI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKJ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKJ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKJ-01A-01R.fusion.vcf	3			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKJ-01A-01R.indel.vcf	3			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01R	RNA	EFO	SRS600862	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-01R A33653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33653	SRX535079	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKJ-01A-01R A33653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33653.fastq	SRR1784869	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1784869/SRR1784869.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274431	@dbgap@:reads/SRP012006/SRS600862/SRX535079/SRR1274431/SRR1274431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMKJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMKJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKN-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKN-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMKN-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKN-01A-01R.fusion.vcf	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMKN-01A-01R.indel.vcf	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01R	RNA	EFO	SRS600872	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01R A33648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33648	SRX535105	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMKN-01A-01R A33648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33648.fastq	SRR1797028	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1797028/SRR1797028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274422	@dbgap@:reads/SRP012006/SRS600872/SRX535105/SRR1274422/SRR1274422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMKN-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMKN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLI-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLI-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLI-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMLI-01A-01R.fusion.vcf	3			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMLI-01A-01R.indel.vcf	3			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01R	RNA	EFO	SRS600107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-01R A33525 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33525	SRX535087	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLI-01A-01R A33525 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33525.fastq	SRR1796943	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1796943/SRR1796943.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274464	@dbgap@:reads/SRP012006/SRS600107/SRX535087/SRR1274464/SRR1274464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMLI-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMLI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLZ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLZ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMLZ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMLZ-01A-01R.fusion.vcf	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMLZ-01A-01R.indel.vcf	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01R	RNA	EFO	SRS600148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-01R A33526 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33526	SRX535099	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMLZ-01A-01R A33526 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33526.fastq	SRR1797041	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1797041/SRR1797041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274418	@dbgap@:reads/SRP012006/SRS600148/SRX535099/SRR1274418/SRR1274418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMLZ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMLZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMMY-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMMY-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMMY-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMMY-01A-01R.fusion.vcf	3			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMMY-01A-01R.indel.vcf	3			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01R	RNA	EFO	SRS600859	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-01R A33654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33654	SRX535068	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJMMY-01A-01R A33654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33654.fastq	SRR1797036	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1797036/SRR1797036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274483	@dbgap@:reads/SRP012006/SRS600859/SRX535068/SRR1274483/SRR1274483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMMY-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMMY-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMRL-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMRL-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMRL-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMRL-01A-01R.fusion.vcf	3			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMRL-01A-01R.indel.vcf	3			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01R	RNA	EFO	SRS600136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01R A33495 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33495	SRX535060	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMRL-01A-01R A33495 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33495.fastq	SRR1796958	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1796958/SRR1796958.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274427	@dbgap@:reads/SRP012006/SRS600136/SRX535060/SRR1274427/SRR1274427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMRL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMRL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMSE-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMSE-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMSE-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMSE-01A-01R.fusion.vcf	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMSE-01A-01R.indel.vcf	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01R	RNA	EFO	SRS600893	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01R A33571 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33571	SRX535082	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMSE-01A-01R A33571 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33571.fastq	SRR1797039	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1797039/SRR1797039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274463	@dbgap@:reads/SRP012006/SRS600893/SRX535082/SRR1274463/SRR1274463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMSE-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMSE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMUF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMUF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMUF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMUF-01A-01R.fusion.vcf	3			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMUF-01A-01R.indel.vcf	3			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01R	RNA	EFO	SRS600127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01R A33527 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33527	SRX535034	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJMUF-01A-01R A33527 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33527.fastq	SRR1797056	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1797056/SRR1797056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274440	@dbgap@:reads/SRP012006/SRS600127/SRX535034/SRR1274440/SRR1274440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMUF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMUF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMVC-01A-01R.fusion.vcf	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMVC-01A-01R.indel.vcf	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01R	RNA	EFO	SRS600113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-01R A33550 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33550	SRX541718	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJMVC-01A-01R A33550 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33550.fastq	SRR1796982	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1796982/SRR1796982.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33550_1_lane_dupsFlagged.bam	SRR1285671	@dbgap@:reads/SRP012006/SRS600113/SRX541718/SRR1285671/SRR1285671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMVC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMVC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMVU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMVU-01A-01R.fusion.vcf	3			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMVU-01A-01R.indel.vcf	3			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01R	RNA	EFO	SRS600118	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-01R A33504 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33504	SRX541722	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJMVU-01A-01R A33504 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33504.fastq	SRR1796990	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1796990/SRR1796990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285670	@dbgap@:reads/SRP012006/SRS600118/SRX541722/SRR1285670/SRR1285670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMVU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMVU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMXF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMXF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJMXF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMXF-01A-01R.fusion.vcf	3			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJMXF-01A-01R.indel.vcf	3			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01R	RNA	EFO	SRS600130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01R A33528 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33528	SRX541741	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJMXF-01A-01R A33528 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2371-1./A33528.fastq	SRR1796949	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1796949/SRR1796949.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_4_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285619	@dbgap@:reads/SRP012006/SRS600130/SRX541741/SRR1285619/SRR1285619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJMXF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJMXF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAA-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAA-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAA-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNAA-01A-01R.fusion.vcf	3			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNAA-01A-01R.indel.vcf	3			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01R	RNA	EFO	SRS600119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01R A33505 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33505	SRX541728	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-31	TARGET-50-PAJNAA-01A-01R A33505 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2387-1./A33505.fastq	SRR1797043	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1797043/SRR1797043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33505_1_lane_dupsFlagged.bam	SRR1285627	@dbgap@:reads/SRP012006/SRS600119/SRX541728/SRR1285627/SRR1285627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNAA-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNAA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAV-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAV-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNAV-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNAV-01A-01R.fusion.vcf	3			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNAV-01A-01R.indel.vcf	3			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01R	RNA	EFO	SRS600132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01R A33531 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33531	SRX541739	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNAV-01A-01R A33531 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33531.fastq	SRR1797024	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1797024/SRR1797024.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285633	@dbgap@:reads/SRP012006/SRS600132/SRX541739/SRR1285633/SRR1285633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNAV-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNAV-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNBN-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNBN-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNBN-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNBN-01A-01R.fusion.vcf	3			
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNBN-01A-01R.indel.vcf	3			
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01R	RNA	EFO	SRS600875	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01R A33572 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33572	SRX535107	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNBN-01A-01R A33572 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33572.fastq	SRR1796970	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1796970/SRR1796970.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274447	@dbgap@:reads/SRP012006/SRS600875/SRX535107/SRR1274447/SRR1274447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNBN-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNBN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCC-01A-01R.fusion.vcf	3			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCC-01A-01R.indel.vcf	3			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01R	RNA	EFO	SRS600857	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01R A33655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33655	SRX535071	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCC-01A-01R A33655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33655.fastq	SRR1797033	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1797033/SRR1797033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274458	@dbgap@:reads/SRP012006/SRS600857/SRX535071/SRR1274458/SRR1274458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNCC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNCC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCJ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCJ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCJ-01A-01R.fusion.vcf	3			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCJ-01A-01R.indel.vcf	3			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01R	RNA	EFO	SRS600855	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-01R A33656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33656	SRX535093	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNCJ-01A-01R A33656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33656.fastq	SRR1784867	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1784867/SRR1784867.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274444	@dbgap@:reads/SRP012006/SRS600855/SRX535093/SRR1274444/SRR1274444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNCJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNCJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCZ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCZ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNCZ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCZ-01A-01R.fusion.vcf	3			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNCZ-01A-01R.indel.vcf	3			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01R	RNA	EFO	SRS600896	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01R A33657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33657	SRX535038	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNCZ-01A-01R A33657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33657.fastq	SRR1796971	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1796971/SRR1796971.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274419	@dbgap@:reads/SRP012006/SRS600896/SRX535038/SRR1274419/SRR1274419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNCZ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNCZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNDU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNDU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNDU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNDU-01A-01R.fusion.vcf	3			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNDU-01A-01R.indel.vcf	3			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01R	RNA	EFO	SRS600105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01R A33551 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33551	SRX541695	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAJNDU-01A-01R A33551 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33551.fastq	SRR1797057	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1797057/SRR1797057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33551_1_lane_dupsFlagged.bam	SRR1285655	@dbgap@:reads/SRP012006/SRS600105/SRX541695/SRR1285655/SRR1285655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNDU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNDU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNEC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNEC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNEC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNEC-01A-01R.fusion.vcf	3			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNEC-01A-01R.indel.vcf	3			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01R	RNA	EFO	SRS600142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01R A33552 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33552	SRX541750	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNEC-01A-01R A33552 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2379-1./A33552.fastq	SRR1796940	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1796940/SRR1796940.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_4_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285626	@dbgap@:reads/SRP012006/SRS600142/SRX541750/SRR1285626/SRR1285626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNEC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNEC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNGH-01A-01R.fusion.vcf	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNGH-01A-01R.indel.vcf	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01R	RNA	EFO	SRS600884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-01R A33573 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33573	SRX535053	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNGH-01A-01R A33573 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2346-1./A33573.fastq	SRR1797037	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1797037/SRR1797037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274451	@dbgap@:reads/SRP012006/SRS600884/SRX535053/SRR1274451/SRR1274451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNGH-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNGH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-02A-01R.exon.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-02A-01R.gene.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNGH-02A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNGH-02A-01R.fusion.vcf	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNGH-02A-01R.indel.vcf	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01R	RNA	EFO	SRS600886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01R A33574 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33574	SRX535075	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNGH-02A-01R A33574 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2354-1./A33574.fastq	SRR1796989	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1796989/SRR1796989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_8_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274433	@dbgap@:reads/SRP012006/SRS600886/SRX535075/SRR1274433/SRR1274433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNGH-02A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNGH-02A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNJJ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNJJ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNJJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNJJ-01A-01R.fusion.vcf	3			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNJJ-01A-01R.indel.vcf	3			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01R	RNA	EFO	SRS600904	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-01R A33658 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33658	SRX535097	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNJJ-01A-01R A33658 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33658.fastq	SRR1797032	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1797032/SRR1797032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274413	@dbgap@:reads/SRP012006/SRS600904/SRX535097/SRR1274413/SRR1274413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNJJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNJJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNLT-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNLT-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNLT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNLT-01A-01R.fusion.vcf	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNLT-01A-01R.indel.vcf	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01R	RNA	EFO	SRS600891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-01R A33643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33643	SRX535090	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNLT-01A-01R A33643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33643.fastq	SRR1784865	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1784865/SRR1784865.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274480	@dbgap@:reads/SRP012006/SRS600891/SRX535090/SRR1274480/SRR1274480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNLT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNLT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNNC-01A-01R.fusion.vcf	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNNC-01A-01R.indel.vcf	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01R	RNA	EFO	SRS600099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-01R A33532 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33532	SRX541696	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNNC-01A-01R A33532 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33532.fastq	SRR1797021	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1797021/SRR1797021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285620	@dbgap@:reads/SRP012006/SRS600099/SRX541696/SRR1285620/SRR1285620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNNC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNNC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNR-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNR-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNNR-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNNR-01A-01R.fusion.vcf	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNNR-01A-01R.indel.vcf	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01R	RNA	EFO	SRS600117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-01R A33506 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33506	SRX541743	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNNR-01A-01R A33506 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33506.fastq	SRR1796959	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1796959/SRR1796959.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285665	@dbgap@:reads/SRP012006/SRS600117/SRX541743/SRR1285665/SRR1285665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNNR-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNNR-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRH-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRH-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRH-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRH-01A-01R.fusion.vcf	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRH-01A-01R.indel.vcf	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01R	RNA	EFO	SRS600135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01R A33494 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33494	SRX541720	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRH-01A-01R A33494 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33494.fastq	SRR1797013	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1797013/SRR1797013.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285635	@dbgap@:reads/SRP012006/SRS600135/SRX541720/SRR1285635/SRR1285635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNRH-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNRH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRL-01A-01R.fusion.vcf	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRL-01A-01R.indel.vcf	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01R	RNA	EFO	SRS600124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-01R A33533 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33533	SRX541715	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNRL-01A-01R A33533 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2364-1./A33533.fastq	SRR1796980	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1796980/SRR1796980.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285638	@dbgap@:reads/SRP012006/SRS600124/SRX541715/SRR1285638/SRR1285638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNRL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNRL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-11A-01R.exon.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-11A-01R.gene.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNRL-11A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRL-11A-01R.fusion.vcf	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNRL-11A-01R.indel.vcf	3			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01R	RNA	EFO	SRS601889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-11A-01R A34693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34693	SRX541744	"RNA-Seq analysis of normal sample TARGET-50-PAJNRL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNRL-11A-01R A34693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34693.fastq	SRR1796947	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1796947/SRR1796947.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34693_1_lane_dupsFlagged.bam	SRR1285651	@dbgap@:reads/SRP012006/SRS601889/SRX541744/SRR1285651/SRR1285651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNRL-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNRL-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNSL-01A-01R.fusion.vcf	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNSL-01A-01R.indel.vcf	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01R	RNA	EFO	SRS600895	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01R A33659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33659	SRX535078	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNSL-01A-01R A33659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33659.fastq	SRR1796957	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1796957/SRR1796957.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274470	@dbgap@:reads/SRP012006/SRS600895/SRX535078/SRR1274470/SRR1274470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNSL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNSL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-11A-01R.exon.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-11A-01R.gene.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNSL-11A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNSL-11A-01R.fusion.vcf	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNSL-11A-01R.indel.vcf	3			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01R	RNA	EFO	SRS601892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-11A-01R A34697 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34697	SRX541723	"RNA-Seq analysis of normal sample TARGET-50-PAJNSL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNSL-11A-01R A34697 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2528-1./A34697.fastq	SRR1796964	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1796964/SRR1796964.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34697_1_lane_dupsFlagged.bam	SRR1285653	@dbgap@:reads/SRP012006/SRS601892/SRX541723/SRR1285653/SRR1285653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNSL-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNSL-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNTJ-01A-01R.fusion.vcf	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNTJ-01A-01R.indel.vcf	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01R	RNA	EFO	SRS600858	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-01R A33575 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33575	SRX535059	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-01A-01R A33575 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2353-1./A33575.fastq	SRR1796975	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1796975/SRR1796975.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_7_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274469	@dbgap@:reads/SRP012006/SRS600858/SRX535059/SRR1274469/SRR1274469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNTJ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNTJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-02A-01R.exon.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-02A-01R.gene.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNTJ-02A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNTJ-02A-01R.fusion.vcf	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNTJ-02A-01R.indel.vcf	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01R	RNA	EFO	SRS600905	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01R A33576 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33576	SRX535045	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNTJ-02A-01R A33576 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2348-1./A33576.fastq	SRR1797002	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1797002/SRR1797002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_2_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274439	@dbgap@:reads/SRP012006/SRS600905/SRX535045/SRR1274439/SRR1274439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNTJ-02A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNTJ-02A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUP-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUP-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNUP-01A-01R.fusion.vcf	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNUP-01A-01R.indel.vcf	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01R	RNA	EFO	SRS600116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-01R A33507 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33507	SRX541693	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNUP-01A-01R A33507 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2385-1./A33507.fastq	SRR1797011	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1797011/SRR1797011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_8_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285624	@dbgap@:reads/SRP012006/SRS600116/SRX541693/SRR1285624/SRR1285624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNUP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNUP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUS-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUS-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNUS-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNUS-01A-01R.fusion.vcf	3			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNUS-01A-01R.indel.vcf	3			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01R	RNA	EFO	SRS600103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01R A33534 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33534	SRX535088	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNUS-01A-01R A33534 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2358-1./A33534.fastq	SRR1796944	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1796944/SRR1796944.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_4_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274486	@dbgap@:reads/SRP012006/SRS600103/SRX535088/SRR1274486/SRR1274486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNUS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNUS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVE-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVE-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVE-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNVE-01A-01R.fusion.vcf	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNVE-01A-01R.indel.vcf	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01R	RNA	EFO	SRS600141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-01R A33508 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33508	SRX535048	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNVE-01A-01R A33508 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2355-1./A33508.fastq	SRR1796967	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1796967/SRR1796967.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274468	@dbgap@:reads/SRP012006/SRS600141/SRX535048/SRR1274468/SRR1274468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNVE-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNVE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVX-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVX-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNVX-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNVX-01A-01R.fusion.vcf	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNVX-01A-01R.indel.vcf	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01R	RNA	EFO	SRS600102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-01R A33493 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33493	SRX541702	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJNVX-01A-01R A33493 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33493.fastq	SRR1796999	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1796999/SRR1796999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285668	@dbgap@:reads/SRP012006/SRS600102/SRX541702/SRR1285668/SRR1285668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNVX-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNVX-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNYT-01A-02R.exon.quantification.txt	3			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNYT-01A-02R.gene.quantification.txt	3			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNYT-01A-02R.isoform.quantification.txt	3			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNYT-01A-02R.fusion.vcf	3			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNYT-01A-02R.indel.vcf	3			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02R	RNA	EFO	SRS600092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-02R A33535 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33535	SRX535072	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNYT-01A-02R A33535 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33535.fastq	SRR1796992	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1796992/SRR1796992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274423	@dbgap@:reads/SRP012006/SRS600092/SRX535072/SRR1274423/SRR1274423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNYT-01A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNYT-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZI-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZI-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZI-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZI-01A-01R.fusion.vcf	3			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZI-01A-01R.indel.vcf	3			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01R	RNA	EFO	SRS600906	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01R A33577 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33577	SRX535067	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJNZI-01A-01R A33577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2356-1./A33577.fastq	SRR1796991	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1796991/SRR1796991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_2_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274454	@dbgap@:reads/SRP012006/SRS600906/SRX535067/SRR1274454/SRR1274454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNZI-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNZI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZK-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZK-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZK-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZK-01A-01R.fusion.vcf	3			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZK-01A-01R.indel.vcf	3			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01R	RNA	EFO	SRS600900	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01R A33660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33660	SRX535104	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJNZK-01A-01R A33660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33660.fastq	SRR1796987	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1796987/SRR1796987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274481	@dbgap@:reads/SRP012006/SRS600900/SRX535104/SRR1274481/SRR1274481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNZK-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNZK-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZS-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZS-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZS-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZS-01A-01R.fusion.vcf	3			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZS-01A-01R.indel.vcf	3			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01R	RNA	EFO	SRS600122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01R A33536 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33536	SRX535046	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJNZS-01A-01R A33536 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33536.fastq	SRR1797052	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1797052/SRR1797052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274450	@dbgap@:reads/SRP012006/SRS600122/SRX535046/SRR1274450/SRR1274450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNZS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNZS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJNZU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZU-01A-01R.fusion.vcf	3			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJNZU-01A-01R.indel.vcf	3			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01R	RNA	EFO	SRS600882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01R A33661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33661	SRX535089	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAJNZU-01A-01R A33661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2157-1./A33661.fastq	SRR1796955	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1796955/SRR1796955.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_5_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274449	@dbgap@:reads/SRP012006/SRS600882/SRX535089/SRR1274449/SRR1274449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJNZU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJNZU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAR-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAR-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAR-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPAR-01A-01R.fusion.vcf	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPAR-01A-01R.indel.vcf	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01R	RNA	EFO	SRS600101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01R A33537 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33537	SRX535092	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPAR-01A-01R A33537 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2357-1./A33537.fastq	SRR1797016	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1797016/SRR1797016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274442	@dbgap@:reads/SRP012006/SRS600101/SRX535092/SRR1274442/SRR1274442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPAR-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPAR-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPAU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPAU-01A-01R.fusion.vcf	3			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPAU-01A-01R.indel.vcf	3			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01R	RNA	EFO	SRS600094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-01R A33538 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33538	SRX541724	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPAU-01A-01R A33538 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2366-1./A33538.fastq	SRR1797025	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1797025/SRR1797025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285652	@dbgap@:reads/SRP012006/SRS600094/SRX541724/SRR1285652/SRR1285652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPAU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPAU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPCM-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPCM-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPCM-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPCM-01A-01R.fusion.vcf	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPCM-01A-01R.indel.vcf	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01R	RNA	EFO	SRS600163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01R A33501 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33501	SRX541712	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPCM-01A-01R A33501 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2373-1./A33501.fastq	SRR1796954	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1796954/SRR1796954.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_6_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285661	@dbgap@:reads/SRP012006/SRS600163/SRX541712/SRR1285661/SRR1285661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPCM-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPCM-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDC-01A-01R.fusion.vcf	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDC-01A-01R.indel.vcf	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01R	RNA	EFO	SRS600877	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-01R A33578 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33578	SRX541705	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAJPDC-01A-01R A33578 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2370-1./A33578.fastq	SRR1796978	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1796978/SRR1796978.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_3_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285621	@dbgap@:reads/SRP012006/SRS600877/SRX541705/SRR1285621/SRR1285621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPDC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPDC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-02A-01R.exon.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-02A-01R.gene.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDC-02A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDC-02A-01R.fusion.vcf	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDC-02A-01R.indel.vcf	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01R	RNA	EFO	SRS600854	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01R A33579 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33579	SRX541725	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDC-02A-01R A33579 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2380-1./A33579.fastq	SRR1796941	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1796941/SRR1796941.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_5_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285657	@dbgap@:reads/SRP012006/SRS600854/SRX541725/SRR1285657/SRR1285657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPDC-02A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPDC-02A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDN-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDN-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPDN-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDN-01A-01R.fusion.vcf	3			
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPDN-01A-01R.indel.vcf	3			
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-01R	RNA	EFO	SRS600161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-01R A33553 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33553	SRX541719	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAJPDN-01A-01R A33553 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2376-1./A33553.fastq	SRR1797008	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1797008/SRR1797008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_1_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285629	@dbgap@:reads/SRP012006/SRS600161/SRX541719/SRR1285629/SRR1285629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPDN-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPDN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPEW-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPEW-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPEW-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPEW-01A-01R.fusion.vcf	3			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPEW-01A-01R.indel.vcf	3			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01R	RNA	EFO	SRS600899	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-01R A33662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33662	SRX535083	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPEW-01A-01R A33662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2183-1./A33662.fastq	SRR1796952	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1796952/SRR1796952.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_7_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274429	@dbgap@:reads/SRP012006/SRS600899/SRX535083/SRR1274429/SRR1274429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPEW-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPEW-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPGY-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPGY-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPGY-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPGY-01A-01R.fusion.vcf	3			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPGY-01A-01R.indel.vcf	3			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01R	RNA	EFO	SRS600126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01R A33539 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33539	SRX535065	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAJPGY-01A-01R A33539 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2360-1./A33539.fastq	SRR1797009	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1797009/SRR1797009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274443	@dbgap@:reads/SRP012006/SRS600126/SRX535065/SRR1274443/SRR1274443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPGY-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPGY-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-01A-01R.exon.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-01A-01R.gene.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPHA-01A-01R.fusion.vcf	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPHA-01A-01R.indel.vcf	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01R	RNA	EFO	SRS600856	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-01R A33663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33663	SRX535037	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAJPHA-01A-01R A33663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2171-1./A33663.fastq	SRR1796969	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1796969/SRR1796969.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_3_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274472	@dbgap@:reads/SRP012006/SRS600856/SRX535037/SRR1274472/SRR1274472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPHA-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPHA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-11A-01R.exon.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-11A-01R.gene.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAJPHA-11A-01R.isoform.quantification.txt	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPHA-11A-01R.fusion.vcf	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAJPHA-11A-01R.indel.vcf	3			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01R	RNA	EFO	SRS601890	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-11A-01R A34698 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34698	SRX541749	"RNA-Seq analysis of normal sample TARGET-50-PAJPHA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPHA-11A-01R A34698 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2529-1./A34698.fastq	SRR1796945	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1796945/SRR1796945.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34698_1_lane_dupsFlagged.bam	SRR1285616	@dbgap@:reads/SRP012006/SRS601890/SRX541749/SRR1285616/SRR1285616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAJPHA-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAJPHA-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKECR-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKECR-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKECR-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKECR-01A-01R.fusion.vcf	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKECR-01A-01R.indel.vcf	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01R	RNA	EFO	SRS600131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-01R A33496 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33496	SRX541726	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKECR-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKECR-01A-01R A33496 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2381-1./A33496.fastq	SRR1810804	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1810804/SRR1810804.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285640	@dbgap@:reads/SRP012006/SRS600131/SRX541726/SRR1285640/SRR1285640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKECR-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKECR-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFME-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFME-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFME-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKFME-01A-01R.fusion.vcf	3			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKFME-01A-01R.indel.vcf	3			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01R	RNA	EFO	SRS600165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01R A33540 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33540	SRX541694	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKFME-01A-01R A33540 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2368-1./A33540.fastq	SRR1796938	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1796938/SRR1796938.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285664	@dbgap@:reads/SRP012006/SRS600165/SRX541694/SRR1285664/SRR1285664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKFME-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKFME-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFYV-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFYV-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKFYV-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKFYV-01A-01R.fusion.vcf	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKFYV-01A-01R.indel.vcf	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01R	RNA	EFO	SRS600159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-01R A33509 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33509	SRX535095	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKFYV-01A-01R A33509 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2347-1./A33509.fastq	SRR1796984	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1796984/SRR1796984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_1_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274416	@dbgap@:reads/SRP012006/SRS600159/SRX535095/SRR1274416/SRR1274416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKFYV-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKFYV-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGED-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGED-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGED-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGED-01A-01R.fusion.vcf	3			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGED-01A-01R.indel.vcf	3			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01R	RNA	EFO	SRS600095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-01R A35281 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35281	SRX567383	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGED-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-50-PAKGED-01A-01R A35281 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35281.fastq	SRR1797062	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1797062/SRR1797062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35281_1_lane_dupsFlagged.bam	SRR1329257	@dbgap@:reads/SRP012006/SRS600095/SRX567383/SRR1329257/SRR1329257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKGED-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKGED-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGMU-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGMU-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGMU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGMU-01A-01R.fusion.vcf	3			
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGMU-01A-01R.indel.vcf	3			
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-01R	RNA	EFO	SRS600111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-01R A33497 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33497	SRX541700	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKGMU-01A-01R A33497 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2384-1./A33497.fastq	SRR1797049	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1797049/SRR1797049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285660	@dbgap@:reads/SRP012006/SRS600111/SRX541700/SRR1285660/SRR1285660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKGMU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKGMU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGZX-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGZX-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKGZX-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGZX-01A-01R.fusion.vcf	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKGZX-01A-01R.indel.vcf	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01R	RNA	EFO	SRS600885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-01R A33631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33631	SRX535081	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKGZX-01A-01R A33631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33631.fastq	SRR1796948	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1796948/SRR1796948.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274474	@dbgap@:reads/SRP012006/SRS600885/SRX535081/SRR1274474/SRR1274474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKGZX-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKGZX-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKJGM-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKJGM-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKJGM-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKJGM-01A-01R.fusion.vcf	3			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKJGM-01A-01R.indel.vcf	3			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01R	RNA	EFO	SRS600150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01R A33555 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33555	SRX541736	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PAKJGM-01A-01R A33555 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2388-1..1/A33555.fastq	SRR1797051	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1797051/SRR1797051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33555_1_lane_dupsFlagged.bam	SRR1285659	@dbgap@:reads/SRP012006/SRS600150/SRX541736/SRR1285659/SRR1285659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKJGM-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKJGM-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKNS-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKNS-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKNS-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKKNS-01A-01R.fusion.vcf	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKKNS-01A-01R.indel.vcf	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01R	RNA	EFO	SRS600106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-01R A33498 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33498	SRX541733	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKKNS-01A-01R A33498 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33498.fastq	SRR1797034	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1797034/SRR1797034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285634	@dbgap@:reads/SRP012006/SRS600106/SRX541733/SRR1285634/SRR1285634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKKNS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKKNS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKSE-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKSE-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKKSE-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKKSE-01A-01R.fusion.vcf	3			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKKSE-01A-01R.indel.vcf	3			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01R	RNA	EFO	SRS600892	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-01R A33664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33664	SRX535096	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKKSE-01A-01R A33664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33664.fastq	SRR1784866	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1784866/SRR1784866.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_AGCATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274441	@dbgap@:reads/SRP012006/SRS600892/SRX535096/SRR1274441/SRR1274441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKKSE-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKKSE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMSV-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMSV-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMSV-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKMSV-01A-01R.fusion.vcf	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKMSV-01A-01R.indel.vcf	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01R	RNA	EFO	SRS600128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-01R A33556 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33556	SRX541747	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMSV-01A-01R A33556 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2382-1./A33556.fastq	SRR1797007	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1797007/SRR1797007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_5_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285615	@dbgap@:reads/SRP012006/SRS600128/SRX541747/SRR1285615/SRR1285615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKMSV-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKMSV-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMUB-01A-02R.exon.quantification.txt	3			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMUB-01A-02R.gene.quantification.txt	3			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKMUB-01A-02R.isoform.quantification.txt	3			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKMUB-01A-02R.fusion.vcf	3			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKMUB-01A-02R.indel.vcf	3			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02R	RNA	EFO	SRS600152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-02R A33541 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33541	SRX541727	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKMUB-01A-02R A33541 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2375-1./A33541.fastq	SRR1796962	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1796962/SRR1796962.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_8_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285628	@dbgap@:reads/SRP012006/SRS600152/SRX541727/SRR1285628/SRR1285628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKMUB-01A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKMUB-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNAL-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNAL-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNAL-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNAL-01A-01R.fusion.vcf	3			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNAL-01A-01R.indel.vcf	3			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01R	RNA	EFO	SRS600151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-01R A33499 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33499	SRX541721	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNAL-01A-01R A33499 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2378-1./A33499.fastq	SRR1796951	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1796951/SRR1796951.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285658	@dbgap@:reads/SRP012006/SRS600151/SRX541721/SRR1285658/SRR1285658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKNAL-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKNAL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNRX-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNRX-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNRX-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNRX-01A-01R.fusion.vcf	3			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNRX-01A-01R.indel.vcf	3			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01R	RNA	EFO	SRS600125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-01R A33510 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33510	SRX535084	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNRX-01A-01R A33510 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2361-1./A33510.fastq	SRR1797060	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1797060/SRR1797060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_7_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274425	@dbgap@:reads/SRP012006/SRS600125/SRX535084/SRR1274425/SRR1274425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKNRX-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKNRX-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNTW-01A-02R.exon.quantification.txt	3			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNTW-01A-02R.gene.quantification.txt	3			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNTW-01A-02R.isoform.quantification.txt	3			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNTW-01A-02R.fusion.vcf	3			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNTW-01A-02R.indel.vcf	3			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02R	RNA	EFO	SRS600160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02R A33542 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33542	SRX541734	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKNTW-01A-02R A33542 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33542.fastq	SRR1797005	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1797005/SRR1797005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285669	@dbgap@:reads/SRP012006/SRS600160/SRX541734/SRR1285669/SRR1285669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKNTW-01A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKNTW-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNXS-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNXS-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKNXS-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNXS-01A-01R.fusion.vcf	3			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKNXS-01A-01R.indel.vcf	3			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01R	RNA	EFO	SRS600110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01R A33511 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33511	SRX535103	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKNXS-01A-01R A33511 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2352-1./A33511.fastq	SRR1797046	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1797046/SRR1797046.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_6_ACATCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274479	@dbgap@:reads/SRP012006/SRS600110/SRX535103/SRR1274479/SRR1274479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKNXS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKNXS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKPDF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKPDF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKPDF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKPDF-01A-01R.fusion.vcf	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKPDF-01A-01R.indel.vcf	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01R	RNA	EFO	SRS600873	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-01R A33647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33647	SRX535036	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PAKPDF-01A-01R A33647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2158-1./A33647.fastq	SRR1796985	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1796985/SRR1796985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274466	@dbgap@:reads/SRP012006/SRS600873/SRX535036/SRR1274466/SRR1274466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKPDF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKPDF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRCC-01A-02R.exon.quantification.txt	3			
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRCC-01A-02R.gene.quantification.txt	3			
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRCC-01A-02R.isoform.quantification.txt	3			
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRCC-01A-02R.fusion.vcf	3			
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRCC-01A-02R.indel.vcf	3			
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-02R	RNA	EFO	SRS600869	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-02R A33650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33650	SRX535069	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRCC-01A-02R A33650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2163-1./A33650.fastq	SRR1796966	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1796966/SRR1796966.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_3_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274421	@dbgap@:reads/SRP012006/SRS600869/SRX535069/SRR1274421/SRR1274421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKRCC-01A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKRCC-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRVH-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRVH-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRVH-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRVH-01A-01R.fusion.vcf	3			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRVH-01A-01R.indel.vcf	3			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01R	RNA	EFO	SRS600894	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-01R A33644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33644	SRX535041	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRVH-01A-01R A33644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33644.fastq	SRR1784868	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1784868/SRR1784868.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274414	@dbgap@:reads/SRP012006/SRS600894/SRX535041/SRR1274414/SRR1274414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKRVH-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKRVH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRZW-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRZW-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKRZW-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRZW-01A-01R.fusion.vcf	3			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKRZW-01A-01R.indel.vcf	3			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01R	RNA	EFO	SRS600865	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-01R A33665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33665	SRX535062	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKRZW-01A-01R A33665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33665.fastq	SRR1796988	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1796988/SRR1796988.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274445	@dbgap@:reads/SRP012006/SRS600865/SRX535062/SRR1274445/SRR1274445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKRZW-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKRZW-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSCC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSCC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSCC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKSCC-01A-01R.fusion.vcf	3			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKSCC-01A-01R.indel.vcf	3			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01R	RNA	EFO	SRS600887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01R A33666 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33666	SRX535070	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKSCC-01A-01R A33666 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33666.fastq	SRR1797058	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1797058/SRR1797058.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with uneven 5'/3' coverage >25%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274417	@dbgap@:reads/SRP012006/SRS600887/SRX535070/SRR1274417/SRR1274417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKSCC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKSCC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSDG-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSDG-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKSDG-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKSDG-01A-01R.fusion.vcf	3			
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKSDG-01A-01R.indel.vcf	3			
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-01R	RNA	EFO	SRS600139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-01R A33557 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33557	SRX535073	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKSDG-01A-01R A33557 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2362-1./A33557.fastq	SRR1797061	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1797061/SRR1797061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_3_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274485	@dbgap@:reads/SRP012006/SRS600139/SRX535073/SRR1274485/SRR1274485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKSDG-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKSDG-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKUIT-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKUIT-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKUIT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKUIT-01A-01R.fusion.vcf	3			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKUIT-01A-01R.indel.vcf	3			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01R	RNA	EFO	SRS600143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01R A33512 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33512	SRX535100	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKUIT-01A-01R A33512 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2351-1./A33512.fastq	SRR1796979	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1796979/SRR1796979.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_5_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274424	@dbgap@:reads/SRP012006/SRS600143/SRX535100/SRR1274424/SRR1274424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKUIT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKUIT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKULH-01A-02R.exon.quantification.txt	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKULH-01A-02R.gene.quantification.txt	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKULH-01A-02R.isoform.quantification.txt	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKULH-01A-02R.fusion.vcf	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKULH-01A-02R.indel.vcf	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02R	RNA	EFO	SRS600146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02R A33558 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33558	SRX541729	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PAKULH-01A-02R A33558 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2367-1./A33558.fastq	SRR1796993	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1796993/SRR1796993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_8_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285614	@dbgap@:reads/SRP012006/SRS600146/SRX541729/SRR1285614/SRR1285614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKULH-01A-02R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKULH-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKVET-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKVET-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKVET-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKVET-01A-01R.fusion.vcf	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKVET-01A-01R.indel.vcf	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01R	RNA	EFO	SRS600863	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01R A33649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33649	SRX535035	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKVET-01A-01R A33649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33649.fastq	SRR1796953	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1796953/SRR1796953.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274465	@dbgap@:reads/SRP012006/SRS600863/SRX535035/SRR1274465/SRR1274465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKVET-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKVET-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKWPM-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKWPM-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKWPM-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKWPM-01A-01R.fusion.vcf	3			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKWPM-01A-01R.indel.vcf	3			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01R	RNA	EFO	SRS600140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01R A33559 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33559	SRX541713	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKWPM-01A-01R A33559 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2372-1./A33559.fastq	SRR1797030	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1797030/SRR1797030.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285648	@dbgap@:reads/SRP012006/SRS600140/SRX541713/SRR1285648/SRR1285648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKWPM-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKWPM-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXWB-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXWB-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXWB-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKXWB-01A-01R.fusion.vcf	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKXWB-01A-01R.indel.vcf	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01R	RNA	EFO	SRS600096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01R A33543 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33543	SRX567380	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-50-PAKXWB-01A-01R A33543 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2684-1..1/A33543.fastq	SRR1797026	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1797026/SRR1797026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3L9BACXX_7_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1329256	@dbgap@:reads/SRP012006/SRS600096/SRX567380/SRR1329256/SRR1329256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKXWB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKXWB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXXF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXXF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKXXF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKXXF-01A-01R.fusion.vcf	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKXXF-01A-01R.indel.vcf	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01R	RNA	EFO	SRS600866	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-01R A33637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33637	SRX535091	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PAKXXF-01A-01R A33637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33637.fastq	SRR1797018	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1797018/SRR1797018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274473	@dbgap@:reads/SRP012006/SRS600866/SRX535091/SRR1274473/SRR1274473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKXXF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKXXF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYFC-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYFC-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYFC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKYFC-01A-01R.fusion.vcf	3			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKYFC-01A-01R.indel.vcf	3			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01R	RNA	EFO	SRS600889	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-01R A33667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33667	SRX535101	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKYFC-01A-01R A33667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2166-1./A33667.fastq	SRR1797050	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1797050/SRR1797050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_6_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1274436	@dbgap@:reads/SRP012006/SRS600889/SRX535101/SRR1274436/SRR1274436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKYFC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKYFC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYLT-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYLT-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKYLT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKYLT-01A-01R.fusion.vcf	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKYLT-01A-01R.indel.vcf	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01R	RNA	EFO	SRS600156	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01R A33513 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33513	SRX535056	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PAKYLT-01A-01R A33513 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2349-1./A33513.fastq	SRR1796977	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1796977/SRR1796977.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_3_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274435	@dbgap@:reads/SRP012006/SRS600156/SRX535056/SRR1274435/SRR1274435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKYLT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKYLT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZER-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZER-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZER-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZER-01A-01R.fusion.vcf	3			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZER-01A-01R.indel.vcf	3			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01R	RNA	EFO	SRS600138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01R A33544 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33544	SRX541706	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PAKZER-01A-01R A33544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2369-1./A33544.fastq	SRR1796972	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1796972/SRR1796972.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_2_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285646	@dbgap@:reads/SRP012006/SRS600138/SRX541706/SRR1285646/SRR1285646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKZER-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKZER-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZFK-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZFK-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZFK-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZFK-01A-01R.fusion.vcf	3			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZFK-01A-01R.indel.vcf	3			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01R	RNA	EFO	SRS600876	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01R A33668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33668	SRX535077	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZFK-01A-01R A33668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2168-1./A33668.fastq	SRR1796976	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1796976/SRR1796976.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_8_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274482	@dbgap@:reads/SRP012006/SRS600876/SRX535077/SRR1274482/SRR1274482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKZFK-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKZFK-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZHF-01A-01R.exon.quantification.txt	3			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZHF-01A-01R.gene.quantification.txt	3			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PAKZHF-01A-01R.isoform.quantification.txt	3			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZHF-01A-01R.fusion.vcf	3			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PAKZHF-01A-01R.indel.vcf	3			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01R	RNA	EFO	SRS600901	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01R A33669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200	A33669	SRX535086	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PAKZHF-01A-01R A33669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33669.fastq	SRR1797047	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1797047/SRR1797047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274452	@dbgap@:reads/SRP012006/SRS600901/SRX535086/SRR1274452/SRR1274452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PAKZHF-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PAKZHF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDTE-01A-01R.exon.quantification.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDTE-01A-01R.gene.quantification.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDTE-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALDTE-01A-01R.fusion.vcf	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALDTE-01A-01R.indel.vcf	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01R	RNA	EFO	SRS600155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-01R A33545 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33545	SRX535055	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALDTE-01A-01R A33545 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2350-1./A33545.fastq	SRR1796994	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1796994/SRR1796994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37UBACXX_4_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274467	@dbgap@:reads/SRP012006/SRS600155/SRX535055/SRR1274467/SRR1274467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALDTE-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALDTE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDWP-01A-01R.exon.quantification.txt	3			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDWP-01A-01R.gene.quantification.txt	3			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALDWP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALDWP-01A-01R.fusion.vcf	3			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALDWP-01A-01R.indel.vcf	3			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01R	RNA	EFO	SRS600133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-01R A33546 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33546	SRX541697	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALDWP-01A-01R A33546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2365-1./A33546.fastq	SRR1797042	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1797042/SRR1797042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285643	@dbgap@:reads/SRP012006/SRS600133/SRX541697/SRR1285643/SRR1285643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALDWP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALDWP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALERC-01A-01R.exon.quantification.txt	3			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALERC-01A-01R.gene.quantification.txt	3			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALERC-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALERC-01A-01R.fusion.vcf	3			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALERC-01A-01R.indel.vcf	3			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01R	RNA	EFO	SRS600881	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01R A33670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	194	A33670	SRX535042	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALERC-01A-01R A33670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2164-1./A33670.fastq	SRR1797012	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1797012/SRR1797012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_4_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274415	@dbgap@:reads/SRP012006/SRS600881/SRX535042/SRR1274415/SRR1274415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALERC-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALERC-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALEZT-01A-01R.exon.quantification.txt	3			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALEZT-01A-01R.gene.quantification.txt	3			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALEZT-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALEZT-01A-01R.fusion.vcf	3			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALEZT-01A-01R.indel.vcf	3			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01R	RNA	EFO	SRS600104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-01R A33514 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33514	SRX541735	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALEZT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALEZT-01A-01R A33514 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2374-1./A33514.fastq	SRR1796981	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1796981/SRR1796981.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3619ACXX_7_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285644	@dbgap@:reads/SRP012006/SRS600104/SRX541735/SRR1285644/SRR1285644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALEZT-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALEZT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-01A-01R.exon.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-01A-01R.gene.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFME-01A-01R.fusion.vcf	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFME-01A-01R.indel.vcf	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01R	RNA	EFO	SRS600871	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01R A33632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33632	SRX535098	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-50-PALFME-01A-01R A33632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33632.fastq	SRR1796996	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1796996/SRR1796996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274448	@dbgap@:reads/SRP012006/SRS600871/SRX535098/SRR1274448/SRR1274448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALFME-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALFME-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-02A-01R.exon.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-02A-01R.gene.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFME-02A-01R.isoform.quantification.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFME-02A-01R.fusion.vcf	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFME-02A-01R.indel.vcf	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01R	RNA	EFO	SRS600897	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01R A33633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33633	SRX535057	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALFME-02A-01R A33633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33633.fastq	SRR1784864	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1784864/SRR1784864.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274462	@dbgap@:reads/SRP012006/SRS600897/SRX535057/SRR1274462/SRR1274462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALFME-02A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALFME-02A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFRD-01A-01R.exon.quantification.txt	3			
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFRD-01A-01R.gene.quantification.txt	3			
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALFRD-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFRD-01A-01R.fusion.vcf	3			
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALFRD-01A-01R.indel.vcf	3			
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-01R	RNA	EFO	SRS600158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-01R A33560 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33560	SRX541703	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-24	TARGET-50-PALFRD-01A-01R A33560 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2386-1..1/A33560.fastq	SRR1797040	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1797040/SRR1797040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33560_1_lane_dupsFlagged.bam	SRR1285663	@dbgap@:reads/SRP012006/SRS600158/SRX541703/SRR1285663/SRR1285663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALFRD-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALFRD-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGAZ-01A-01R.exon.quantification.txt	3			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGAZ-01A-01R.gene.quantification.txt	3			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGAZ-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGAZ-01A-01R.fusion.vcf	3			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGAZ-01A-01R.indel.vcf	3			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01R	RNA	EFO	SRS600100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-01R A33561 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33561	SRX541730	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGAZ-01A-01R A33561 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33561.fastq	SRR1796965	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1796965/SRR1796965.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1285630	@dbgap@:reads/SRP012006/SRS600100/SRX541730/SRR1285630/SRR1285630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALGAZ-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALGAZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGLU-01A-01R.exon.quantification.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGLU-01A-01R.gene.quantification.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGLU-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGLU-01A-01R.fusion.vcf	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGLU-01A-01R.indel.vcf	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01R	RNA	EFO	SRS600168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-01R A33562 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33562	SRX541704	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALGLU-01A-01R A33562 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2377-1./A33562.fastq	SRR1797044	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1797044/SRR1797044.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 30000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3780ACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1285617	@dbgap@:reads/SRP012006/SRS600168/SRX541704/SRR1285617/SRR1285617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALGLU-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALGLU-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGVY-01A-01R.exon.quantification.txt	3			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGVY-01A-01R.gene.quantification.txt	3			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALGVY-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGVY-01A-01R.fusion.vcf	3			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALGVY-01A-01R.indel.vcf	3			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01R	RNA	EFO	SRS600170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-01R A33563 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33563	SRX535054	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-10	TARGET-50-PALGVY-01A-01R A33563 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2359-1./A33563.fastq	SRR1796939	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1796939/SRR1796939.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C37V9ACXX_5_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1274478	@dbgap@:reads/SRP012006/SRS600170/SRX535054/SRR1274478/SRR1274478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALGVY-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALGVY-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-01A-01R.exon.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-01A-01R.gene.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALJIP-01A-01R.fusion.vcf	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALJIP-01A-01R.indel.vcf	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01R	RNA	EFO	SRS600903	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-01R A33645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33645	SRX535047	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALJIP-01A-01R A33645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33645.fastq	SRR1797031	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1797031/SRR1797031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1274434	@dbgap@:reads/SRP012006/SRS600903/SRX535047/SRR1274434/SRR1274434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALJIP-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALJIP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-02A-01R.exon.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-02A-01R.gene.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALJIP-02A-01R.isoform.quantification.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALJIP-02A-01R.fusion.vcf	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALJIP-02A-01R.indel.vcf	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01R	RNA	EFO	SRS600867	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01R A33646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33646	SRX535076	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-50-PALJIP-02A-01R A33646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33646.fastq	SRR1784863	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1784863/SRR1784863.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274475	@dbgap@:reads/SRP012006/SRS600867/SRX535076/SRR1274475/SRR1274475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALJIP-02A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALJIP-02A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-01A-01R.exon.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-01A-01R.gene.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKCW-01A-01R.fusion.vcf	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKCW-01A-01R.indel.vcf	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01R	RNA	EFO	SRS600129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01R A33564 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33564	SRX541738	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-50-PALKCW-01A-01R A33564 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2363-1./A33564.fastq	SRR1797015	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1797015/SRR1797015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C36Y7ACXX_4_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1285639	@dbgap@:reads/SRP012006/SRS600129/SRX541738/SRR1285639/SRR1285639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALKCW-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALKCW-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-11A-01R.exon.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-11A-01R.gene.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKCW-11A-01R.isoform.quantification.txt	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKCW-11A-01R.fusion.vcf	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKCW-11A-01R.indel.vcf	3			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01R	RNA	EFO	SRS601891	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-11A-01R A34695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34695	SRX541701	"RNA-Seq analysis of normal sample TARGET-50-PALKCW-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKCW-11A-01R A34695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2530-1./A34695.fastq	SRR1797027	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1797027/SRR1797027.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 20%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34695_1_lane_dupsFlagged.bam	SRR1285650	@dbgap@:reads/SRP012006/SRS601891/SRX541701/SRR1285650/SRR1285650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALKCW-11A-01R.rna_normal.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALKCW-11A-01R.format_1.3.rna_normal.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKRS-01A-01R.exon.quantification.txt	3			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKRS-01A-01R.gene.quantification.txt	3			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALKRS-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKRS-01A-01R.fusion.vcf	3			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALKRS-01A-01R.indel.vcf	3			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01R	RNA	EFO	SRS600121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01R A33565 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33565	SRX541708	"RNA-Seq analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-19	TARGET-50-PALKRS-01A-01R A33565 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2383-1./A33565.fastq	SRR1797053	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1797053/SRR1797053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3B0FACXX_6_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1285642	@dbgap@:reads/SRP012006/SRS600121/SRX541708/SRR1285642/SRR1285642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALKRS-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALKRS-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALLFB-01A-01R.exon.quantification.txt	3			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALLFB-01A-01R.gene.quantification.txt	3			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01	TARGET-50-PALLFB-01A-01R.isoform.quantification.txt	3			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALLFB-01A-01R.fusion.vcf	3			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01	TARGET-50-PALLFB-01A-01R.indel.vcf	3			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01R	RNA	EFO	SRS600879	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-01R A33638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A33638	SRX535085	"RNA-Seq analysis of Wilms tumor sample TARGET-50-PALLFB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-13	TARGET-50-PALLFB-01A-01R A33638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2159-1./A33638.fastq	SRR1797014	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1797014/SRR1797014.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34AYACXX_7_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1274459	@dbgap@:reads/SRP012006/SRS600879/SRX535085/SRR1274459/SRR1274459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	TARGET-50-PALLFB-01A-01R.rna_tumor.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-50-PALLFB-01A-01R.format_1.1.rna_tumor.maf.txt	3
