Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Scan Name	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PABKLN-01A-01R.exon.quantification.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PABKLN-01A-01R.gene.quantification.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PABKLN-01A-01R.isoform.quantification.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PABKLN-01A-01R.fusion.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PABKLN-01A-01R.indel.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01R	RNA	EFO	SRS591651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01R A23102 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23102	SRX516210	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PABKLN-01A-01R A23102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23102.fastq	SRR1799069	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1799069/SRR1799069.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236380	@dbgap@:reads/SRP012005/SRS591651/SRX516210/SRR1236380/SRR1236380.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PABKLN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADWRZ-01A-01R.exon.quantification.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADWRZ-01A-01R.gene.quantification.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADWRZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADWRZ-01A-01R.fusion.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADWRZ-01A-01R.indel.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01R	RNA	EFO	SRS945055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01R A37347 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37347	SRX1041123	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADWRZ-01A-01R A37347 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37347.fastq	SRR2042851	@dbgap@:reads/SRP012005/SRS945055/SRX1041123/SRR2042851/SRR2042851.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PADWRZ-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.exon.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.gene.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.isoform.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYCE-01A-01R.fusion.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYCE-01A-01R.indel.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37352.fastq	SRR2042835	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042835/SRR2042835.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PADYCE-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.exon.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.gene.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYCE-01A-01R.isoform.quantification.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYCE-01A-01R.fusion.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYCE-01A-01R.indel.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01R	RNA	EFO	SRS945056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01R A37352 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37352	SRX1041127	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PADYCE-01A-01R A37352 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37352.fastq	SRR2042842	@dbgap@:reads/SRP012005/SRS945056/SRX1041127/SRR2042842/SRR2042842.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PADYCE-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.exon.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.gene.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.isoform.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYZI-01A-01R.fusion.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYZI-01A-01R.indel.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35816.fastq	SRR2059683	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059683/SRR2059683.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PADYZI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.exon.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.gene.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PADYZI-01A-01R.isoform.quantification.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYZI-01A-01R.fusion.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PADYZI-01A-01R.indel.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01R	RNA	EFO	SRS591653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01R A35816 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35816	SRX1055796	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PADYZI-01A-01R A35816 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35816.fastq	SRR2059685	@dbgap@:reads/SRP012005/SRS591653/SRX1055796/SRR2059685/SRR2059685.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PADYZI-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAEHIP-01A-01R.exon.quantification.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAEHIP-01A-01R.gene.quantification.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAEHIP-01A-01R.isoform.quantification.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAEHIP-01A-01R.fusion.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAEHIP-01A-01R.indel.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01R	RNA	EFO	SRS945049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01R A37353 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37353	SRX1041135	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAEHIP-01A-01R A37353 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37353.fastq	SRR2042849	@dbgap@:reads/SRP012005/SRS945049/SRX1041135/SRR2042849/SRR2042849.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAEHIP-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.exon.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.gene.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLRA-01A-01R.fusion.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLRA-01A-01R.indel.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37334.fastq	SRR2042839	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042839/SRR2042839.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJLRA-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.exon.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.gene.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLRA-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLRA-01A-01R.fusion.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLRA-01A-01R.indel.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01R	RNA	EFO	SRS945038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01R A37334 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37334	SRX1041116	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-01R A37334 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37334.fastq	SRR2042850	@dbgap@:reads/SRP012005/SRS945038/SRX1041116/SRR2042850/SRR2042850.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJLRA-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLWM-01A-01R.exon.quantification.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLWM-01A-01R.gene.quantification.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJLWM-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLWM-01A-01R.fusion.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJLWM-01A-01R.indel.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01R	RNA	EFO	SRS591652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01R A23103 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23103	SRX516218	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJLWM-01A-01R A23103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23103.fastq	SRR1799083	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1799083/SRR1799083.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236387	@dbgap@:reads/SRP012005/SRS591652/SRX516218/SRR1236387/SRR1236387.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJLWM-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMBW-01A-01R.exon.quantification.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMBW-01A-01R.gene.quantification.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMBW-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMBW-01A-01R.fusion.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMBW-01A-01R.indel.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01R	RNA	EFO	SRS945044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01R A37348 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37348	SRX1041134	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJMBW-01A-01R A37348 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37348.fastq	SRR2042838	@dbgap@:reads/SRP012005/SRS945044/SRX1041134/SRR2042838/SRR2042838.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJMBW-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.exon.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.gene.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMRB-01A-01R.fusion.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMRB-01A-01R.indel.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35818.fastq	SRR2059686	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059686/SRR2059686.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJMRB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.exon.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.gene.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJMRB-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMRB-01A-01R.fusion.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJMRB-01A-01R.indel.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01R	RNA	EFO	SRS553676	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01R A35818 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35818	SRX1055798	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAJMRB-01A-01R A35818 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35818.fastq	SRR2059687	@dbgap@:reads/SRP012005/SRS553676/SRX1055798/SRR2059687/SRR2059687.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJMRB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNER-01A-01R.exon.quantification.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNER-01A-01R.gene.quantification.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNER-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNER-01A-01R.fusion.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNER-01A-01R.indel.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01R	RNA	EFO	SRS553667	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01R A23105 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23105	SRX516205	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNER-01A-01R A23105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23105.fastq	SRR1799076	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1799076/SRR1799076.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236368	@dbgap@:reads/SRP012005/SRS553667/SRX516205/SRR1236368/SRR1236368.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJNER-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFP-01A-01R.exon.quantification.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFP-01A-01R.gene.quantification.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFP-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNFP-01A-01R.fusion.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNFP-01A-01R.indel.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01R	RNA	EFO	SRS553678	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01R A23106 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23106	SRX516235	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFP-01A-01R A23106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23106.fastq	SRR1799068	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1799068/SRR1799068.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236359	@dbgap@:reads/SRP012005/SRS553678/SRX516235/SRR1236359/SRR1236359.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJNFP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFZ-01A-01R.exon.quantification.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFZ-01A-01R.gene.quantification.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJNFZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNFZ-01A-01R.fusion.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJNFZ-01A-01R.indel.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01R	RNA	EFO	SRS553672	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01R A23107 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23107	SRX516204	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAJNFZ-01A-01R A23107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23107.fastq	SRR1799070	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1799070/SRR1799070.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236363	@dbgap@:reads/SRP012005/SRS553672/SRX516204/SRR1236363/SRR1236363.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJNFZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJPHJ-01A-01R.exon.quantification.txt	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJPHJ-01A-01R.gene.quantification.txt	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAJPHJ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJPHJ-01A-01R.fusion.vcf	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAJPHJ-01A-01R.indel.vcf	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01R	RNA	EFO	SRS945054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01R A37333 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37333	SRX1041124	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAJPHJ-01A-01R A37333 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37333.fastq	SRR2042853	@dbgap@:reads/SRP012005/SRS945054/SRX1041124/SRR2042853/SRR2042853.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAJPHJ-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.exon.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.gene.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKHTL-01A-01R.fusion.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKHTL-01A-01R.indel.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1./A35817.fastq	SRR2059684	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059684/SRR2059684.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKHTL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.exon.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.gene.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKHTL-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKHTL-01A-01R.fusion.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKHTL-01A-01R.indel.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01R	RNA	EFO	SRS553665	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01R A35817 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A35817	SRX1055797	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-52-PAKHTL-01A-01R A35817 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2821-1..1/A35817.fastq	SRR2059688	@dbgap@:reads/SRP012005/SRS553665/SRX1055797/SRR2059688/SRR2059688.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKHTL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKLYZ-01A-01R.exon.quantification.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKLYZ-01A-01R.gene.quantification.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKLYZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKLYZ-01A-01R.fusion.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKLYZ-01A-01R.indel.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01R	RNA	EFO	SRS945037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01R A37349 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37349	SRX1041133	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAKLYZ-01A-01R A37349 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3411-1./A37349.fastq	SRR2042857	@dbgap@:reads/SRP012005/SRS945037/SRX1041133/SRR2042857/SRR2042857.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKLYZ-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.exon.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.gene.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKPEW-01A-01R.fusion.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKPEW-01A-01R.indel.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37335.fastq	SRR2042836	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042836/SRR2042836.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKPEW-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.exon.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.gene.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKPEW-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKPEW-01A-01R.fusion.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKPEW-01A-01R.indel.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01R	RNA	EFO	SRS945034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01R A37335 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37335	SRX1041119	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKPEW-01A-01R A37335 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37335.fastq	SRR2042845	@dbgap@:reads/SRP012005/SRS945034/SRX1041119/SRR2042845/SRR2042845.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKPEW-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKTCT-01A-01R.exon.quantification.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKTCT-01A-01R.gene.quantification.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAKTCT-01A-01R.isoform.quantification.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKTCT-01A-01R.fusion.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAKTCT-01A-01R.indel.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01R	RNA	EFO	SRS945042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01R A37350 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37350	SRX1041136	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAKTCT-01A-01R A37350 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37350.fastq	SRR2042862	@dbgap@:reads/SRP012005/SRS945042/SRX1041136/SRR2042862/SRR2042862.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAKTCT-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARECB-01A-01R.exon.quantification.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARECB-01A-01R.gene.quantification.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARECB-01A-01R.isoform.quantification.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARECB-01A-01R.fusion.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARECB-01A-01R.indel.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01R	RNA	EFO	SRS553668	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01R A23092 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23092	SRX516245	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PARECB-01A-01R A23092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23092.fastq	SRR1799067	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1799067/SRR1799067.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236371	@dbgap@:reads/SRP012005/SRS553668/SRX516245/SRR1236371/SRR1236371.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARECB-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAREWI-01A-02R.exon.quantification.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAREWI-01A-02R.gene.quantification.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAREWI-01A-02R.isoform.quantification.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAREWI-01A-02R.fusion.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAREWI-01A-02R.indel.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02R	RNA	EFO	SRS945033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02R A37351 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37351	SRX1041131	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAREWI-01A-02R A37351 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37351.fastq	SRR2042852	@dbgap@:reads/SRP012005/SRS945033/SRX1041131/SRR2042852/SRR2042852.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAREWI-01A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARGRN-01A-01R.exon.quantification.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARGRN-01A-01R.gene.quantification.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARGRN-01A-01R.isoform.quantification.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARGRN-01A-01R.fusion.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARGRN-01A-01R.indel.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01R	RNA	EFO	SRS553650	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01R A23079 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23079	SRX516225	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARGRN-01A-01R A23079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23079.fastq	SRR1799060	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1799060/SRR1799060.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236372	@dbgap@:reads/SRP012005/SRS553650/SRX516225/SRR1236372/SRR1236372.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARGRN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARIRN-01A-01R.exon.quantification.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARIRN-01A-01R.gene.quantification.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARIRN-01A-01R.isoform.quantification.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARIRN-01A-01R.fusion.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARIRN-01A-01R.indel.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01R	RNA	EFO	SRS553657	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01R A23080 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23080	SRX516248	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARIRN-01A-01R A23080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1221-1./A23080.fastq	SRR1799062	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1799062/SRR1799062.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_4_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236370	@dbgap@:reads/SRP012005/SRS553657/SRX516248/SRR1236370/SRR1236370.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARIRN-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARKKN-01A-01R.exon.quantification.txt	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARKKN-01A-01R.gene.quantification.txt	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARKKN-01A-01R.isoform.quantification.txt	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARKKN-01A-01R.fusion.vcf	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARKKN-01A-01R.indel.vcf	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01R	RNA	EFO	SRS945035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01R A37336 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37336	SRX1041132	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARKKN-01A-01R A37336 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37336.fastq	SRR2042834	@dbgap@:reads/SRP012005/SRS945035/SRX1041132/SRR2042834/SRR2042834.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARKKN-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-01A-01R.exon.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-01A-01R.gene.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-01A-01R.isoform.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARPFY-01A-01R.fusion.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARPFY-01A-01R.indel.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01R	RNA	EFO	SRS553664	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01R A23093 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23093	SRX516232	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARPFY-01A-01R A23093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23093.fastq	SRR1799049	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1799049/SRR1799049.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236384	@dbgap@:reads/SRP012005/SRS553664/SRX516232/SRR1236384/SRR1236384.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARPFY-01A-01R.format_1.2.rna_tumor.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-11A-01R.exon.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-11A-01R.gene.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARPFY-11A-01R.isoform.quantification.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARPFY-11A-01R.fusion.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARPFY-11A-01R.indel.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01R	RNA	EFO	SRS601884	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01R A34699 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34699	SRX590153	"RNA-Seq analysis of normal sample TARGET-52-PARPFY-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARPFY-11A-01R A34699 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34699.fastq	SRR1799043	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1799043/SRR1799043.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34699_1_lane_dupsFlagged.bam	SRR1378488	@dbgap@:reads/SRP012005/SRS601884/SRX590153/SRR1378488/SRR1378488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARPFY-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-01A-01R.exon.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-01A-01R.gene.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-01A-01R.isoform.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARRCL-01A-01R.fusion.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARRCL-01A-01R.indel.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01R	RNA	EFO	SRS553653	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01R A23094 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23094	SRX516230	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARRCL-01A-01R A23094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23094.fastq	SRR1799075	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1799075/SRR1799075.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236393	@dbgap@:reads/SRP012005/SRS553653/SRX516230/SRR1236393/SRR1236393.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARRCL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-11A-01R.exon.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-11A-01R.gene.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARRCL-11A-01R.isoform.quantification.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARRCL-11A-01R.fusion.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARRCL-11A-01R.indel.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01R	RNA	EFO	SRS601885	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01R A34700 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34700	SRX590149	"RNA-Seq analysis of normal sample TARGET-52-PARRCL-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARRCL-11A-01R A34700 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34700.fastq	SRR1799052	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1799052/SRR1799052.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34700_1_lane_dupsFlagged.bam	SRR1378487	@dbgap@:reads/SRP012005/SRS601885/SRX590149/SRR1378487/SRR1378487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARRCL-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.exon.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.gene.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.isoform.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARTKH-01A-01R.fusion.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARTKH-01A-01R.indel.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37331.fastq	SRR2042859	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042859/SRR2042859.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARTKH-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.exon.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.gene.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARTKH-01A-01R.isoform.quantification.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARTKH-01A-01R.fusion.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARTKH-01A-01R.indel.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01R	RNA	EFO	SRS945052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01R A37331 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37331	SRX1041112	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-25	TARGET-52-PARTKH-01A-01R A37331 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3574-1./A37331.fastq	SRR2042860	@dbgap@:reads/SRP012005/SRS945052/SRX1041112/SRR2042860/SRR2042860.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARTKH-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARUGK-01A-01R.exon.quantification.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARUGK-01A-01R.gene.quantification.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARUGK-01A-01R.isoform.quantification.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARUGK-01A-01R.fusion.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARUGK-01A-01R.indel.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01R	RNA	EFO	SRS553671	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01R A23081 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23081	SRX516207	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PARUGK-01A-01R A23081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1224-1./A23081.fastq	SRR1799073	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1799073/SRR1799073.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_7_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236362	@dbgap@:reads/SRP012005/SRS553671/SRX516207/SRR1236362/SRR1236362.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARUGK-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-01A-02R.exon.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-01A-02R.gene.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-01A-02R.isoform.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZBI-01A-02R.fusion.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZBI-01A-02R.indel.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02R	RNA	EFO	SRS553645	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02R A23109 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23109	SRX516228	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PARZBI-01A-02R A23109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1227-1./A23109.fastq	SRR1821985	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1821985/SRR1821985.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_7_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236392	@dbgap@:reads/SRP012005/SRS553645/SRX516228/SRR1236392/SRR1236392.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARZBI-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-11A-01R.exon.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-11A-01R.gene.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZBI-11A-01R.isoform.quantification.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZBI-11A-01R.fusion.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZBI-11A-01R.indel.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01R	RNA	EFO	SRS601886	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01R A34703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34703	SRX590154	"RNA-Seq analysis of normal sample TARGET-52-PARZBI-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PARZBI-11A-01R A34703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34703.fastq	SRR1799042	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1799042/SRR1799042.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34703_1_lane_dupsFlagged.bam	SRR1378489	@dbgap@:reads/SRP012005/SRS601886/SRX590154/SRR1378489/SRR1378489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARZBI-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.exon.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.gene.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.isoform.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZRH-01A-02R.fusion.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZRH-01A-02R.indel.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37345.fastq	SRR2042833	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042833/SRR2042833.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARZRH-01A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.exon.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.gene.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PARZRH-01A-02R.isoform.quantification.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZRH-01A-02R.fusion.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PARZRH-01A-02R.indel.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02R	RNA	EFO	SRS945039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02R A37345 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37345	SRX1041122	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-02R A37345 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3573-1./A37345.fastq	SRR2042846	@dbgap@:reads/SRP012005/SRS945039/SRX1041122/SRR2042846/SRR2042846.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PARZRH-01A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASABD-01A-01R.exon.quantification.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASABD-01A-01R.gene.quantification.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASABD-01A-01R.isoform.quantification.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASABD-01A-01R.fusion.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASABD-01A-01R.indel.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01R	RNA	EFO	SRS553677	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01R A23082 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23082	SRX516213	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASABD-01A-01R A23082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23082.fastq	SRR1799040	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1799040/SRR1799040.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236374	@dbgap@:reads/SRP012005/SRS553677/SRX516213/SRR1236374/SRR1236374.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASABD-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASADZ-01A-01R.exon.quantification.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASADZ-01A-01R.gene.quantification.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASADZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASADZ-01A-01R.fusion.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASADZ-01A-01R.indel.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01R	RNA	EFO	SRS553675	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01R A23083 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23083	SRX516216	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASADZ-01A-01R A23083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23083.fastq	SRR1799086	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1799086/SRR1799086.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236401	@dbgap@:reads/SRP012005/SRS553675/SRX516216/SRR1236401/SRR1236401.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASADZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASAMZ-01A-01R.exon.quantification.txt	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASAMZ-01A-01R.gene.quantification.txt	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASAMZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASAMZ-01A-01R.fusion.vcf	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASAMZ-01A-01R.indel.vcf	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01R	RNA	EFO	SRS945045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01R A37337 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37337	SRX1041114	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASAMZ-01A-01R A37337 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37337.fastq	SRR2042837	@dbgap@:reads/SRP012005/SRS945045/SRX1041114/SRR2042837/SRR2042837.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASAMZ-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASCDH-01A-01R.exon.quantification.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASCDH-01A-01R.gene.quantification.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASCDH-01A-01R.isoform.quantification.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASCDH-01A-01R.fusion.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASCDH-01A-01R.indel.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01R	RNA	EFO	SRS553670	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01R A23084 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23084	SRX516244	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASCDH-01A-01R A23084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23084.fastq	SRR1799048	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1799048/SRR1799048.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236396	@dbgap@:reads/SRP012005/SRS553670/SRX516244/SRR1236396/SRR1236396.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASCDH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-01A-01R.exon.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-01A-01R.gene.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-01A-01R.isoform.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASDLA-01A-01R.fusion.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASDLA-01A-01R.indel.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01R	RNA	EFO	SRS553651	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01R A23095 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23095	SRX516233	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASDLA-01A-01R A23095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23095.fastq	SRR1799084	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1799084/SRR1799084.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236367	@dbgap@:reads/SRP012005/SRS553651/SRX516233/SRR1236367/SRR1236367.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASDLA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-11A-01R.exon.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-11A-01R.gene.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASDLA-11A-01R.isoform.quantification.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASDLA-11A-01R.fusion.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASDLA-11A-01R.indel.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01R	RNA	EFO	SRS601887	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01R A34701 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34701	SRX590152	"RNA-Seq analysis of normal sample TARGET-52-PASDLA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASDLA-11A-01R A34701 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2532-1./A34701.fastq	SRR1799056	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1799056/SRR1799056.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34701_1_lane_dupsFlagged.bam	SRR1378484	@dbgap@:reads/SRP012005/SRS601887/SRX590152/SRR1378484/SRR1378484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASDLA-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGCL-01A-02R.exon.quantification.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGCL-01A-02R.gene.quantification.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGCL-01A-02R.isoform.quantification.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASGCL-01A-02R.fusion.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASGCL-01A-02R.indel.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02R	RNA	EFO	SRS945048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02R A37332 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37332	SRX1041120	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGCL-01A-02R A37332 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37332.fastq	SRR2042832	@dbgap@:reads/SRP012005/SRS945048/SRX1041120/SRR2042832/SRR2042832.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASGCL-01A-02R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGGN-01A-01R.exon.quantification.txt	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGGN-01A-01R.gene.quantification.txt	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASGGN-01A-01R.isoform.quantification.txt	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASGGN-01A-01R.fusion.vcf	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASGGN-01A-01R.indel.vcf	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01R	RNA	EFO	SRS945046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01R A37338 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37338	SRX1041130	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASGGN-01A-01R A37338 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37338.fastq	SRR2042843	@dbgap@:reads/SRP012005/SRS945046/SRX1041130/SRR2042843/SRR2042843.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASGGN-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASILR-01A-01R.exon.quantification.txt	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASILR-01A-01R.gene.quantification.txt	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASILR-01A-01R.isoform.quantification.txt	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASILR-01A-01R.fusion.vcf	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASILR-01A-01R.indel.vcf	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01R	RNA	EFO	SRS945050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01R A37339 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37339	SRX1041113	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASILR-01A-01R A37339 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3409-1./A37339.fastq	SRR2042841	@dbgap@:reads/SRP012005/SRS945050/SRX1041113/SRR2042841/SRR2042841.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASILR-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.exon.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.gene.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.isoform.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASNED-01A-01R.fusion.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASNED-01A-01R.indel.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3408-1./A37346.fastq	SRR2042844	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042844/SRR2042844.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASNED-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.exon.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.gene.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASNED-01A-01R.isoform.quantification.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASNED-01A-01R.fusion.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASNED-01A-01R.indel.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01R	RNA	EFO	SRS945041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01R A37346 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37346	SRX1041125	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-01R A37346 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37346.fastq	SRR2042861	@dbgap@:reads/SRP012005/SRS945041/SRX1041125/SRR2042861/SRR2042861.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASNED-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASRHU-01A-02R.exon.quantification.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASRHU-01A-02R.gene.quantification.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASRHU-01A-02R.isoform.quantification.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASRHU-01A-02R.fusion.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASRHU-01A-02R.indel.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02R	RNA	EFO	SRS553669	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02R A23096 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23096	SRX516236	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASRHU-01A-02R A23096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1216-1./A23096.fastq	SRR1799055	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1799055/SRR1799055.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236391	@dbgap@:reads/SRP012005/SRS553669/SRX516236/SRR1236391/SRR1236391.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASRHU-01A-02R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASVDP-01A-01R.exon.quantification.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASVDP-01A-01R.gene.quantification.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASVDP-01A-01R.isoform.quantification.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASVDP-01A-01R.fusion.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASVDP-01A-01R.indel.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01R	RNA	EFO	SRS553647	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01R A23085 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23085	SRX516214	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASVDP-01A-01R A23085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1223-1./A23085.fastq	SRR1799054	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1799054/SRR1799054.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_6_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236400	@dbgap@:reads/SRP012005/SRS553647/SRX516214/SRR1236400/SRR1236400.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASVDP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASWZZ-01A-01R.exon.quantification.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASWZZ-01A-01R.gene.quantification.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASWZZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASWZZ-01A-01R.fusion.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASWZZ-01A-01R.indel.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01R	RNA	EFO	SRS553656	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01R A23086 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23086	SRX516217	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASWZZ-01A-01R A23086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1225-1./A23086.fastq	SRR1799063	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1799063/SRR1799063.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_8_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236361	@dbgap@:reads/SRP012005/SRS553656/SRX516217/SRR1236361/SRR1236361.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASWZZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXGF-01A-01R.exon.quantification.txt	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXGF-01A-01R.gene.quantification.txt	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXGF-01A-01R.isoform.quantification.txt	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXGF-01A-01R.fusion.vcf	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXGF-01A-01R.indel.vcf	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01R	RNA	EFO	SRS945053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01R A37340 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37340	SRX1041128	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PASXGF-01A-01R A37340 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3410-1./A37340.fastq	SRR2042847	@dbgap@:reads/SRP012005/SRS945053/SRX1041128/SRR2042847/SRR2042847.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASXGF-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-01A-01R.exon.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-01A-01R.gene.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-01A-01R.isoform.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXNA-01A-01R.fusion.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXNA-01A-01R.indel.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01R	RNA	EFO	SRS553674	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01R A23097 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23097	SRX516209	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASXNA-01A-01R A23097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23097.fastq	SRR1799074	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1799074/SRR1799074.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236358	@dbgap@:reads/SRP012005/SRS553674/SRX516209/SRR1236358/SRR1236358.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASXNA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-11A-01R.exon.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-11A-01R.gene.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASXNA-11A-01R.isoform.quantification.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXNA-11A-01R.fusion.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASXNA-11A-01R.indel.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01R	RNA	EFO	SRS601883	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01R A34702 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34702	SRX590150	"RNA-Seq analysis of normal sample TARGET-52-PASXNA-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PASXNA-11A-01R A34702 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2533-1./A34702.fastq	SRR1799065	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1799065/SRR1799065.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34702_1_lane_dupsFlagged.bam	SRR1378485	@dbgap@:reads/SRP012005/SRS601883/SRX590150/SRR1378485/SRR1378485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASXNA-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASYNF-01A-01R.exon.quantification.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASYNF-01A-01R.gene.quantification.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASYNF-01A-01R.isoform.quantification.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASYNF-01A-01R.fusion.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASYNF-01A-01R.indel.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01R	RNA	EFO	SRS553663	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01R A23110 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23110	SRX516241	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASYNF-01A-01R A23110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23110.fastq	SRR1799041	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1799041/SRR1799041.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236398	@dbgap@:reads/SRP012005/SRS553663/SRX516241/SRR1236398/SRR1236398.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASYNF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASZYE-01A-01R.exon.quantification.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASZYE-01A-01R.gene.quantification.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PASZYE-01A-01R.isoform.quantification.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASZYE-01A-01R.fusion.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PASZYE-01A-01R.indel.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01R	RNA	EFO	SRS553661	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01R A23087 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23087	SRX516222	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PASZYE-01A-01R A23087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1220-1./A23087.fastq	SRR1799059	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1799059/SRR1799059.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236364	@dbgap@:reads/SRP012005/SRS553661/SRX516222/SRR1236364/SRR1236364.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PASZYE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATAFT-01A-01R.exon.quantification.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATAFT-01A-01R.gene.quantification.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATAFT-01A-01R.isoform.quantification.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATAFT-01A-01R.fusion.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATAFT-01A-01R.indel.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01R	RNA	EFO	SRS553666	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01R A23098 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23098	SRX516212	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATAFT-01A-01R A23098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23098.fastq	SRR1799038	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1799038/SRR1799038.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236395	@dbgap@:reads/SRP012005/SRS553666/SRX516212/SRR1236395/SRR1236395.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATAFT-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATBLF-01A-01R.exon.quantification.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATBLF-01A-01R.gene.quantification.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATBLF-01A-01R.isoform.quantification.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATBLF-01A-01R.fusion.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATBLF-01A-01R.indel.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01R	RNA	EFO	SRS553660	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01R A23088 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	205	A23088	SRX516231	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-03-13	TARGET-52-PATBLF-01A-01R A23088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1226-1./A23088.fastq	SRR1799080	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1799080/SRR1799080.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C1PCDACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236399	@dbgap@:reads/SRP012005/SRS553660/SRX516231/SRR1236399/SRR1236399.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATBLF-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATDVL-01A-01R.exon.quantification.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATDVL-01A-01R.gene.quantification.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATDVL-01A-01R.isoform.quantification.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATDVL-01A-01R.fusion.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATDVL-01A-01R.indel.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01R	RNA	EFO	SRS553673	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01R A23089 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23089	SRX516227	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATDVL-01A-01R A23089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1214-1./A23089.fastq	SRR1799085	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1799085/SRR1799085.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_5_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236366	@dbgap@:reads/SRP012005/SRS553673/SRX516227/SRR1236366/SRR1236366.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATDVL-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATENH-01A-01R.exon.quantification.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATENH-01A-01R.gene.quantification.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATENH-01A-01R.isoform.quantification.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATENH-01A-01R.fusion.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATENH-01A-01R.indel.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01R	RNA	EFO	SRS553649	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01R A23099 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23099	SRX516215	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATENH-01A-01R A23099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1219-1./A23099.fastq	SRR1799072	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1799072/SRR1799072.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_2_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236397	@dbgap@:reads/SRP012005/SRS553649/SRX516215/SRR1236397/SRR1236397.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATENH-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFXW-01A-01R.exon.quantification.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFXW-01A-01R.gene.quantification.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFXW-01A-01R.isoform.quantification.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATFXW-01A-01R.fusion.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATFXW-01A-01R.indel.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01R	RNA	EFO	SRS553644	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01R A23090 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23090	SRX516238	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFXW-01A-01R A23090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1222-1./A23090.fastq	SRR1799057	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1799057/SRR1799057.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236386	@dbgap@:reads/SRP012005/SRS553644/SRX516238/SRR1236386/SRR1236386.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATFXW-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFZZ-01A-01R.exon.quantification.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFZZ-01A-01R.gene.quantification.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATFZZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATFZZ-01A-01R.fusion.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATFZZ-01A-01R.indel.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01R	RNA	EFO	SRS553646	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01R A23091 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	208	A23091	SRX516239	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATFZZ-01A-01R A23091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1211-1./A23091.fastq	SRR1799058	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1799058/SRR1799058.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_2_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236369	@dbgap@:reads/SRP012005/SRS553646/SRX516239/SRR1236369/SRR1236369.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATFZZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXEE-01A-01R.exon.quantification.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXEE-01A-01R.gene.quantification.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXEE-01A-01R.isoform.quantification.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATXEE-01A-01R.fusion.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATXEE-01A-01R.indel.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01R	RNA	EFO	SRS553643	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01R A23100 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23100	SRX516224	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXEE-01A-01R A23100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23100.fastq	SRR1799051	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1799051/SRR1799051.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236383	@dbgap@:reads/SRP012005/SRS553643/SRX516224/SRR1236383/SRR1236383.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATXEE-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXKA-01A-01R.exon.quantification.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXKA-01A-01R.gene.quantification.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PATXKA-01A-01R.isoform.quantification.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATXKA-01A-01R.fusion.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PATXKA-01A-01R.indel.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01R	RNA	EFO	SRS553648	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01R A23101 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23101	SRX516219	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PATXKA-01A-01R A23101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1210-1./A23101.fastq	SRR1799066	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1799066/SRR1799066.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_1_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236389	@dbgap@:reads/SRP012005/SRS553648/SRX516219/SRR1236389/SRR1236389.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PATXKA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUCGJ-01A-01R.exon.quantification.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUCGJ-01A-01R.gene.quantification.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUCGJ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUCGJ-01A-01R.fusion.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUCGJ-01A-01R.indel.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01R	RNA	EFO	SRS553642	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01R A23112 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23112	SRX516229	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUCGJ-01A-01R A23112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1218-1./A23112.fastq	SRR1799081	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1799081/SRR1799081.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R07ACXX_1_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1236385	@dbgap@:reads/SRP012005/SRS553642/SRX516229/SRR1236385/SRR1236385.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUCGJ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-01A-01R.exon.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-01A-01R.gene.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUDPV-01A-01R.fusion.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUDPV-01A-01R.indel.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01R	RNA	EFO	SRS553652	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01R A23113 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23113	SRX516249	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUDPV-01A-01R A23113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1217-1./A23113.fastq	SRR1799061	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1799061/SRR1799061.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_8_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1236388	@dbgap@:reads/SRP012005/SRS553652/SRX516249/SRR1236388/SRR1236388.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUDPV-01A-01R.format_1.2.rna_tumor.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-11A-01R.exon.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-11A-01R.gene.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUDPV-11A-01R.isoform.quantification.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUDPV-11A-01R.fusion.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUDPV-11A-01R.indel.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01R	RNA	EFO	SRS601882	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01R A34704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A34704	SRX590151	"RNA-Seq analysis of normal sample TARGET-52-PAUDPV-11A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-52-PAUDPV-11A-01R A34704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2531-1./A34704.fastq	SRR1799082	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1799082/SRR1799082.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A34704_1_lane_dupsFlagged.bam	SRR1378486	@dbgap@:reads/SRP012005/SRS601882/SRX590151/SRR1378486/SRR1378486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUDPV-11A-01R.format_1.2.rna_normal.maf.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUEKW-01A-01R.exon.quantification.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUEKW-01A-01R.gene.quantification.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUEKW-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUEKW-01A-01R.fusion.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUEKW-01A-01R.indel.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01R	RNA	EFO	SRS553659	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01R A23114 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23114	SRX516250	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUEKW-01A-01R A23114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1215-1./A23114.fastq	SRR1799044	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1799044/SRR1799044.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236403	@dbgap@:reads/SRP012005/SRS553659/SRX516250/SRR1236403/SRR1236403.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUEKW-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUFVP-01A-01R.exon.quantification.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUFVP-01A-01R.gene.quantification.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUFVP-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUFVP-01A-01R.fusion.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUFVP-01A-01R.indel.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01R	RNA	EFO	SRS553658	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01R A23115 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23115	SRX516226	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-05-03	TARGET-52-PAUFVP-01A-01R A23115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1209-1..4/A23115.fastq	SRR1799047	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1799047/SRR1799047.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C21GWACXX_1_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236390	@dbgap@:reads/SRP012005/SRS553658/SRX516226/SRR1236390/SRR1236390.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUFVP-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUGYZ-01A-01R.exon.quantification.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUGYZ-01A-01R.gene.quantification.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUGYZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUGYZ-01A-01R.fusion.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUGYZ-01A-01R.indel.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01R	RNA	EFO	SRS553654	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01R A23116 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23116	SRX516237	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUGYZ-01A-01R A23116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23116.fastq	SRR1799053	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1799053/SRR1799053.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236379	@dbgap@:reads/SRP012005/SRS553654/SRX516237/SRR1236379/SRR1236379.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUGYZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUHAZ-01A-01R.exon.quantification.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUHAZ-01A-01R.gene.quantification.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUHAZ-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUHAZ-01A-01R.fusion.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUHAZ-01A-01R.indel.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01R	RNA	EFO	SRS553662	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01R A23117 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23117	SRX516240	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUHAZ-01A-01R A23117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1212-1./A23117.fastq	SRR1799077	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1799077/SRR1799077.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_3_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1236373	@dbgap@:reads/SRP012005/SRS553662/SRX516240/SRR1236373/SRR1236373.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUHAZ-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUNPA-01A-01R.exon.quantification.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUNPA-01A-01R.gene.quantification.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAUNPA-01A-01R.isoform.quantification.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUNPA-01A-01R.fusion.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAUNPA-01A-01R.indel.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01R	RNA	EFO	SRS553655	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01R A23118 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A23118	SRX516247	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-28	TARGET-52-PAUNPA-01A-01R A23118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	IX1213-1./A23118.fastq	SRR1799079	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1799079/SRR1799079.sra	1	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	D1R37ACXX_4_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1236378	@dbgap@:reads/SRP012005/SRS553655/SRX516247/SRR1236378/SRR1236378.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAUNPA-01A-01R.format_1.1.rna_tumor.maf.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVCKS-01A-01R.exon.quantification.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVCKS-01A-01R.gene.quantification.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVCKS-01A-01R.isoform.quantification.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVCKS-01A-01R.fusion.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVCKS-01A-01R.indel.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01R	RNA	EFO	SRS945032	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01R A37328 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37328	SRX1041129	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVCKS-01A-01R A37328 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37328.fastq	SRR2042858	@dbgap@:reads/SRP012005/SRS945032/SRX1041129/SRR2042858/SRR2042858.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAVCKS-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVDPR-01A-01R.exon.quantification.txt	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVDPR-01A-01R.gene.quantification.txt	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVDPR-01A-01R.isoform.quantification.txt	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVDPR-01A-01R.fusion.vcf	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVDPR-01A-01R.indel.vcf	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01R	RNA	EFO	SRS945047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01R A37342 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37342	SRX1041126	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVDPR-01A-01R A37342 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3412-1./A37342.fastq	SRR2042863	@dbgap@:reads/SRP012005/SRS945047/SRX1041126/SRR2042863/SRR2042863.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAVDPR-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVITI-01A-01R.exon.quantification.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVITI-01A-01R.gene.quantification.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVITI-01A-01R.isoform.quantification.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVITI-01A-01R.fusion.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVITI-01A-01R.indel.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01R	RNA	EFO	SRS945036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01R A37329 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37329	SRX1041117	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAVITI-01A-01R A37329 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3406-1./A37329.fastq	SRR2042840	@dbgap@:reads/SRP012005/SRS945036/SRX1041117/SRR2042840/SRR2042840.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAVITI-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVVIT-01A-01R.exon.quantification.txt	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVVIT-01A-01R.gene.quantification.txt	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAVVIT-01A-01R.isoform.quantification.txt	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVVIT-01A-01R.fusion.vcf	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAVVIT-01A-01R.indel.vcf	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01R	RNA	EFO	SRS945051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01R A37343 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37343	SRX1041137	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAVVIT-01A-01R A37343 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3413-1./A37343.fastq	SRR2042856	@dbgap@:reads/SRP012005/SRS945051/SRX1041137/SRR2042856/SRR2042856.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAVVIT-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFBL-01A-01R.exon.quantification.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFBL-01A-01R.gene.quantification.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFBL-01A-01R.isoform.quantification.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFBL-01A-01R.fusion.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFBL-01A-01R.indel.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01R	RNA	EFO	SRS945040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01R A37330 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37330	SRX1041121	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFBL-01A-01R A37330 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3407-1./A37330.fastq	SRR2042855	@dbgap@:reads/SRP012005/SRS945040/SRX1041121/SRR2042855/SRR2042855.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAWFBL-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.exon.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.gene.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.isoform.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFWK-01A-01R.fusion.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFWK-01A-01R.indel.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-30	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	IX3405-1./A37344.fastq	SRR2042848	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042848/SRR2042848.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAWFWK-01A-01R.format_1.3.rna_tumor.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.exon.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.gene.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-52-PAWFWK-01A-01R.isoform.quantification.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFWK-01A-01R.fusion.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-52-PAWFWK-01A-01R.indel.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:RNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01R	RNA	EFO	SRS945043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01R A37344 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA		A37344	SRX1041115	"RNA-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-01R A37344 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	IX3572-1./A37344.fastq	SRR2042854	@dbgap@:reads/SRP012005/SRS945043/SRX1041115/SRR2042854/SRR2042854.sra	1							bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-52-PAWFWK-01A-01R.format_1.3.rna_tumor.maf.txt	3
