Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	3208470	68254836	36998	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	68255218	68261238	4	-1.1646
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	68261493	245880329	91937	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	2	474222	242124735	131200	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	526235	175354927	94157	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	175355864	175356138	2	-1.6255
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	175360795	199023074	12122	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	4	1043934	189836143	102634	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	5	967233	180293075	100394	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	959281	19927319	13203	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	19927420	19929305	3	-1.4559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	19931217	170745844	83169	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	671810	51559078	29994	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	51563084	51566203	2	-2.1987
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	51572539	158077879	51259	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	607667	35759035	20815	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	35762397	35765533	2	-1.5263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	35765561	145304484	60655	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	779932	25568182	15730	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	25594425	25636515	31	-0.7803
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	25640370	140058573	52197	-0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	405240	7308742	4581	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	7309511	7313153	2	-1.4711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	7313174	42970244	21976	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	42972393	59812806	7476	-0.3617
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	59813027	61093172	915	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	61093674	61285004	130	-0.3753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	61286390	64971331	2407	-0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	64971495	64977954	3	-1.2202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	64978849	129343989	40503	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	129346813	129347092	2	-1.7635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	129351649	135075077	2790	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	11	446120	133647740	77192	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	12	760163	131671419	73874	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	18348806	26037969	4024	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	26041427	26062890	10	-0.5452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	26063472	114005560	52542	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	14	19571208	105059083	49392	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	21238778	51617361	15762	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	51626641	51627071	2	-1.3622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	51627302	85340922	20002	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	85341434	85341496	2	-1.4803
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	85341879	99701830	8721	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	16	593460	87907437	40846	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	17	933971	78510305	36959	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	18	319586	75210228	42622	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	19	235018	56410679	20930	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	19	56411284	56412296	2	-1.4841
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	19	56418425	63570038	3007	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	403764	22108950	14460	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	22109029	22109235	2	-1.4942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	22113208	61690281	22793	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	14269492	21180477	4371	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	21180943	21333510	117	0.4665
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	21334530	46503202	16078	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	15803930	27296347	4221	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	27299514	27310463	2	-1.4648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	27310867	47717016	12691	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	3167107	124290884	50513	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124296342	124317786	12	-0.9135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124317838	124332810	12	-0.5202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124333174	124358305	16	-0.9836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124360169	154558783	13186	5e-04
