Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	3218610	68482248	36995	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	68482630	68488650	4	-1.1646
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	1	68488905	247813706	91994	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	2	484222	242476062	131192	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	2212571	173872233	94151	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	173873170	173873444	2	-1.6255
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	3	173878101	197538677	12122	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	4	1053934	188763651	102639	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	5	914233	180360469	100394	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	1014281	19819340	13204	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	19819441	19821326	3	-1.4559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	6	19823238	170903919	83177	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	705284	51591584	29993	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	51595590	51598709	2	-2.1987
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	7	51605045	158385118	51261	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	617667	35639493	20815	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	35642855	35645991	2	-1.5263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	8	35646019	145232496	60662	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	789932	25578182	15731	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	25604425	25646515	31	-0.7803
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	9	25650370	140938752	52208	-0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	415240	7268736	4581	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	7269505	7273147	2	-1.4711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	7273168	43650238	21976	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	43652387	60142800	7477	-0.3616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	60143021	61423166	915	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	61423668	61614998	130	-0.3753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	61616384	65301325	2407	-0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	65301489	65307948	3	-1.2202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	65308843	129453999	40500	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	129456823	129457102	2	-1.7635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	10	129461659	135225087	2790	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	11	456120	134142530	77182	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	12	889902	133161346	73869	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	19450806	27139969	4024	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	27143427	27164890	10	-0.5452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	13	27165472	114987458	52538	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	14	20501368	105988038	49390	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	23687685	53830069	15763	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	53839349	53839779	2	-1.3622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	53840010	87539918	20000	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	87540430	87540492	2	-1.4803
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	15	87540875	101884307	8720	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	16	653459	89379936	40782	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	17	987221	80917016	36959	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	18	329586	77109240	42619	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	19	284018	58878226	23939	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	455764	22160950	14463	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	22161029	22161235	2	-1.4942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	20	22165208	62219837	22793	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	15347621	22258606	4371	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	22259072	22411639	117	0.4665
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	21	22412659	47678774	16077	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	17423930	28966347	4221	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	28969514	28980463	2	-1.4648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	22	28980867	49331012	12690	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	3157107	124463203	50532	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124468661	124490105	12	-0.9135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124490157	124505129	12	-0.5202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124505493	124530624	16	-0.9836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C08_801960	X	124532488	154905589	13184	5e-04
