Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	1	3218610	36872665	17558	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	1	36873249	36873318	2	-3.5617
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	1	36874242	247813706	111434	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	2	484222	242476062	131183	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	3	2212571	126002385	69104	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	3	126003271	126006045	2	-1.3219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	3	126007058	197538677	37187	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	4	1053934	162193979	88928	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	4	162194344	162220337	16	-0.917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	4	162220384	188763651	13697	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	5	914233	164833618	91094	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	5	164836256	164846459	4	-1.0936
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	5	164846777	180360469	9296	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	1014281	35670533	20552	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	35671501	35722439	25	0.6039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	35725855	52219967	10228	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	52220793	52225666	6	0.9168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	52236968	89277819	17982	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	89283640	89283672	2	1.2253
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	89284114	135335429	26487	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	135342254	135343238	2	-1.3639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	135349570	157321397	14058	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	157322999	157325304	2	-1.2689
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	6	157325975	170903919	7047	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	7	705284	158385118	81255	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	8	617667	145232496	81477	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	9	789932	140938752	67975	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	10	415240	135225087	80782	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	11	456120	102459506	56164	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	11	102460358	102462595	3	-1.3221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	11	102464063	134142530	21006	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	12	889902	133161346	73871	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	19450806	57241355	22291	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	57245196	57246060	2	-1.2601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	57246427	59495894	978	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	59499129	59499221	2	-1.5744
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	59499423	67446835	3835	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	67449321	67457645	4	-0.868
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	67465795	83322268	9730	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	83324617	83325272	3	1.0579
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	13	83325767	114987458	19732	-0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	14	20501368	105988038	49391	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	15	23687685	34467672	4516	-0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	15	34467806	34469135	2	-1.8409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	15	34469959	101884307	39965	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	16	653459	89379936	40775	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	17	987221	80917016	36956	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	18	329586	77109240	42617	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	19	284018	58878226	23938	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	20	455764	35500058	19438	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	20	35500151	35500661	2	-1.1944
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	20	35500850	38481872	1989	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	20	38482445	38487439	4	-1.077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	20	38487490	62219837	15829	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	21	15347621	47678774	20562	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	22	17423930	49331012	16918	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C09_802114	X	3157107	154905589	63751	0.0017
