Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	61735	25583341	14160	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	25593128	25646946	27	0.6774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	25646986	72768916	28856	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	72768936	72811133	44	0.9726
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	72811148	104103230	20046	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	104109238	104178038	29	0.5077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	104221531	104225568	11	-0.1179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	104239689	104303403	14	1.0904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	104303501	106019205	920	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	106019236	106022375	16	1.1113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	106024055	110227396	2666	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	110227500	110242953	20	-0.5631
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	110244998	112690248	1954	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	112690326	112697174	20	0.4384
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	112697188	144842558	5246	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	144849539	144868360	5	1.0847
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	144869084	152555795	2794	0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	152555884	152586540	30	0.4357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	152586576	152759678	173	0.0343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	152761923	152768700	37	0.3709
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	152773905	169216937	11333	0.0246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	169233974	169241766	7	0.9577
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	169242401	196727850	18186	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	196731035	196823317	97	-0.3212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	196823613	203464932	4314	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	203465275	203470657	3	-1.4148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	203473856	229391708	17307	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	229396308	229398392	2	-2.4452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	229400952	248818483	14174	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	248825137	248832254	5	-1.2945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	1	248833965	249224388	133	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	12784	4203580	2986	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	4205687	4223512	38	-0.4371
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	4223567	51608284	33386	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	51615451	51616794	2	-1.8324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	51617121	52754561	781	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	52754728	52754881	3	-2.4178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	52758753	52781497	30	-0.3388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	52781504	86937687	21940	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	86953070	86953854	2	-1.6845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	86970406	117585649	13531	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	117588586	117589853	3	-1.3409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	117591245	123475749	3758	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	123476418	123482241	11	-0.7068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	123483653	146865094	14389	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	146865183	146866934	17	0.8909
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	146877806	208354955	36979	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	208355178	208359336	16	-0.8533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	208359476	213186549	3043	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	213187203	213191825	24	-0.8804
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	2	213192126	243089456	19069	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	60345	68746164	47847	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	68746259	68747413	14	-1.6108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	68748758	95456106	14089	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	95466880	95468110	2	-3.027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	95468680	97899419	1254	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	97908670	97914817	4	-1.5693
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	97915948	98937784	595	0.0524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	98944458	98949421	38	-0.6844
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	98950964	129775858	18739	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	129776676	129806052	48	-0.4216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	129806236	142516826	7754	0.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	142517368	142520179	2	-1.6687
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	142523349	148962976	4160	0.0218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	148963395	148968121	25	-0.8013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	148971080	162513092	8344	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	162513149	162626603	69	0.6467
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	162628614	192877902	19189	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	192877962	192882903	19	-1.2157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	192886435	195276072	1482	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	195279210	195446922	32	-0.4003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	3	195455508	197896118	1193	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	12281	576267	276	0.0241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	577749	580089	2	-1.409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	581648	10210390	5525	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	10223416	10235268	35	1.3022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	10236142	10390715	171	-0.0301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	10392354	10400668	16	-2.537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	10402718	34779054	16796	0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	34786500	34818480	32	-0.5453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	34818770	69220383	19468	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	69226848	69484109	94	0.407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	69485840	115173700	27736	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	115175323	115182175	23	-1.2313
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	115184229	134487011	11271	0.0234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	134489574	134490329	4	-1.0888
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	134491906	139909714	3283	0.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	139911424	139913984	2	-1.3999
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	139915962	140229007	234	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	140232546	140238360	6	-1.0301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	140239695	149486629	5592	0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	149493193	149493502	3	-2.3007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	149494154	161874000	7638	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	161880018	161884919	22	-0.4117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	161884958	165569182	2390	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	165576770	165593134	12	-0.8007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	165604098	172369346	4265	0.0224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	172374884	172377444	8	2.1305
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	172377458	172987928	401	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	172989148	172989533	12	-1.8033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	172995979	189221258	10938	0.0212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	189221360	189222813	5	-1.0246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	4	189223053	191027923	1174	0.0565
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	15532	46251306	30792	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	46271008	46273502	8	1.2284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	46278212	57321646	5077	0.0229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	57326027	57333515	31	1.7153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	57333533	57644082	247	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	57646202	57649298	4	-1.6618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	57653168	113963874	33469	0.0218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	113964021	113964233	2	-2.1107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	113968674	151514171	23926	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	151515386	151518351	14	-0.8494
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	5	151520271	180790320	19507	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	149661	254283	101	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	257353	294725	22	0.5672
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	294837	23743017	18110	0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	23744672	23745430	2	-3.1079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	23747732	26739025	2047	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	26742099	26755915	8	-2.3029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	26758030	26773063	11	-0.4502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	26773509	27090404	140	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	27094956	27095134	2	-3.1353
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	27095709	29837072	1294	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	29837187	29849267	16	-0.9345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	29850196	31280823	671	-0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	31286276	31295953	8	-1.4282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	31295987	32431292	505	-0.0471
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	32431552	32561295	36	1.103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	32570046	32690027	82	0.2524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	32690797	32690830	3	3.0338
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	32692227	53931084	13693	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	53931151	53931803	6	2.6198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	53931855	58422642	2418	0.0318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	58426052	58427069	4	-3.2284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	58432574	75728344	8845	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	75731324	75735643	5	-1.358
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	75741924	77014948	725	0.05
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	77016900	77016911	2	1.3689
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	77016926	77436532	296	0.0354
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	77439868	77452382	15	-3.9162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	77452392	77452757	6	-1.4809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	77461073	103738039	16572	0.022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	103738084	103759658	37	-0.2929
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	103759725	126182763	13903	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	126183692	126186776	3	-2.5769
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	126188893	161032565	23063	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	161032719	161033283	5	1.129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	6	161068042	171051005	7261	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	43355	16697438	11433	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	16700447	16701844	10	-0.906
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	16709708	28212972	8790	0.023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	28214397	28215128	2	-2.9696
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	28217380	38298322	7192	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	38303120	38402496	124	0.2572
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	38404387	54386505	11009	0.0241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	54386509	54386517	5	2.3597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	54393488	70420438	6298	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	70423250	70426141	2	-2.5096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	70428243	82055603	6181	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	82056608	82107468	41	0.6113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	82108626	103548056	12407	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	103549724	103549766	2	-1.8062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	103557818	126044923	13939	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	126044974	126046615	13	1.2967
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	126046876	133785177	4707	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	133785195	133795634	25	-1.9291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	133795665	142474939	5701	0.0259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	142476719	142479665	7	-3.4129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	142479722	142485699	15	-1.3868
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	142485771	142486045	5	-2.9749
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	142486115	153147638	6463	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	153147645	153147712	2	-2.6661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	7	153147715	159127004	4116	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	31254	18265154	16746	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	18266157	18271185	4	-1.806
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	18271387	143233571	78128	0.0212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	143234817	143235878	2	-2.1311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	143236006	144299158	421	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	144299335	144299405	3	-1.0893
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	8	144304632	146298155	645	-0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	46587	43187967	31372	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	43315670	43800186	41	0.6567
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	44114872	44250853	31	0.0957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	44251228	45915244	108	-0.1212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	46038854	69166377	217	0.1289
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	69166497	69167484	2	-1.6309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	69168147	74671009	2961	0.0576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	74671719	74686638	13	-0.8173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	74694149	90815688	11533	0.0598
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	90819763	90822113	5	-1.3602
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	9	90823046	141091394	33628	0.0541
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	72759	17894976	14882	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	17927554	17949857	3	1.3477
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	17971816	24375263	4355	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	24377674	24378054	11	0.8768
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	24378908	31246510	5045	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	31251334	31251726	9	-0.7528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	31251738	47081695	7389	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	47084785	47099869	16	0.4566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	47100656	47541189	42	0.1889
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	47542094	47743516	190	0.5057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	47771030	67306276	12792	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	67307923	67326066	32	-0.4348
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	67326147	81251331	9238	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	81283267	81293615	2	-3.1538
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	81336695	135234192	36921	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	135242873	135377278	110	0.972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	10	135387240	135506704	37	-0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	198510	4295756	1805	0.0128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	4301356	4359288	18	1.1654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	4384797	4968117	654	0.0256
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	4968510	4975705	28	-1.8396
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	4976257	4976892	13	-0.533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	4976907	5788080	784	0.0253
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	5788092	5812360	34	0.3596
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	5816186	15333272	7021	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	15333431	15334036	2	-1.4048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	15336571	18940322	2393	0.0309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	18940856	18940870	2	-0.5724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	18949072	18961178	40	1.0464
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	18961281	18961922	15	0.616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	18961935	55363340	21843	0.0209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	55374032	55453009	59	-0.5315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	55453576	81503468	14622	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	81503992	81517158	10	-0.8857
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	81522632	107230719	17829	0.0243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	107238656	107239128	7	-2.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	11	107252362	134944770	19951	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	12	150442	869198	419	-0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	12	869263	874029	16	-3.2814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	12	875354	9633870	5770	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	12	9637909	9713674	21	-1.7499
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	12	9714954	133778189	78825	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	19026949	38070370	13556	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	38071135	38084543	15	-0.545
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	38084732	39052811	703	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	39057572	39058056	2	-2.1225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	39065057	49531551	7333	0.0218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	49533715	49536504	2	-2.8143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	49537705	64224205	8338	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	64224792	64234911	8	-1.1141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	13	64236692	115108397	34321	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	19002124	19557041	40	-0.0578
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	19562139	20423372	149	-0.4024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	20424926	70018047	31494	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	70018368	70022467	8	-0.8545
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	70022713	73995774	2623	0.0123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	74001123	74029900	10	0.9291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	74029915	106460902	20782	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	106479675	106482296	4	-1.3638
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	106487040	106796025	139	0.0861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	106796228	106821736	10	1.158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	106825916	106881352	31	-0.2475
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	106882342	107277354	266	0.1153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	14	107280286	107285437	7	-0.2353
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	15	20016328	63922752	26904	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	15	63925068	63931614	4	-1.9496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	15	63934856	102469040	25133	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	60777	16739438	11825	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	16746929	16786071	3	-1.189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	16787094	21389970	2639	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	21412403	21593455	24	-0.3954
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	21593634	22577603	371	-0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	22587465	22710742	67	-0.3666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	22712979	29342601	4254	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	29345440	29358351	5	-0.9619
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	29358364	55796594	8144	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	55798222	55798779	3	1.8935
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	55804348	70136868	8782	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	70139542	70198396	17	0.6837
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	70211444	74384258	2426	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	74397058	74456601	9	0.9635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	74465396	87361393	12598	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	87361831	87361864	2	-1.843
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	16	87364378	90287535	1269	-0.0249
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	17	526	44166455	23504	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	17	44166500	44364170	121	0.5891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	17	44394412	55687489	7062	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	17	55688333	55688993	2	-2.0405
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	17	55691993	81049726	14605	0.0128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	18	11543	78015057	50795	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	90910	21839724	9696	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	21841241	21843620	2	-1.9983
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	21844788	53518514	16224	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	53518747	53552229	22	0.5372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	53554240	55312612	1094	-0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	55313000	55313817	2	-1.6893
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	55314287	58135349	1792	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	58136900	58141460	4	-1.0487
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	58142486	58940514	470	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	58943408	58944375	2	-1.0923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	19	58946056	59097854	52	-0.0236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	20	61305	1560922	1205	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	20	1560951	1593893	43	1.0787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	20	1597946	62956153	41249	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	21	10736871	10926905	28	0.5888
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	21	10930431	48096957	24372	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	16052528	16490976	70	-0.2328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	16491549	16657301	24	0.1701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	16662742	16683416	2	1.8091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	16864898	24330218	4520	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	24330269	24332625	3	-2.4382
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	24332933	24344422	4	-0.2252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	24350529	24396814	19	0.715
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	22	24401529	51234455	18924	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	X	168477	103257989	54378	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	X	103259181	103305358	58	0.5528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	X	103311747	155182354	30147	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	2650438	6101425	872	-2.666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	6107901	6296423	85	-3.9951
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	6299046	7399842	468	-3.0299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	7400746	9759564	1203	-3.3788
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	9774614	15590276	951	-3.1218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	15590342	15594523	3	-7.6945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	15594889	19034392	1826	-3.2517
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	19038302	19297985	113	-3.7466
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	19300250	19570632	142	-3.1021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	19571480	21088297	705	-3.741
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	21088485	23653771	978	-3.2538
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	23683731	23690350	2	-8.5123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	23715701	23859163	73	-2.9973
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	23859468	26218232	513	-3.6585
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	26222820	26408766	43	-2.918
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	26409789	26417092	4	-5.2963
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	26417501	26510575	33	-2.5865
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	26510799	27240184	89	-4.2464
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	27254679	27720551	98	-2.9505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	27721084	28277692	195	-3.7432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	28289727	28321752	12	-5.1482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	28322019	28423938	44	-3.5402
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C11_801978	Y	28438116	59018259	183	-2.8182
