Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	51598	17062591	8829	0.0208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	17063449	17133178	53	-0.4383
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	17133205	72541086	34085	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	72541504	72583736	46	1.1158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	72584492	103960870	20083	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	103960907	104105162	31	0.7084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	104108766	110029023	3602	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	110029038	110041701	18	1.1209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	110044476	112491734	1955	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	112491771	112498764	25	0.5034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	112498899	143560896	5247	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	143560901	143576984	3	-1.7851
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	143579717	150837793	2801	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	150837984	150846092	14	0.9957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	150846245	151028547	181	0.0538
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	151028563	151035324	36	-1.445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	151040529	162351733	7234	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	162351826	162352266	2	-1.5889
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	162363043	167483561	4098	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	167500598	167509025	8	0.9968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	167521501	177233878	6251	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	177233880	177238354	3	-1.6753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	177238397	187656851	7018	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	187657108	187658237	2	-1.8904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	187660145	194976383	4912	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	194977690	195055615	54	0.4829
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	195055624	195079130	44	0.1405
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	195079153	195083353	3	-1.9648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	195089940	200833895	3697	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	200834176	200834409	3	1.3735
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	200835165	205662660	3106	0.0209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	205666783	205673023	3	-1.7567
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	1	205673696	247191011	29135	0.0267
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	2784	30704950	21554	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	30706804	30707734	2	-2.056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	30707930	34571412	2581	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	34571478	34590561	17	-1.0372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	34590667	52607972	13047	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	52607984	52634878	33	0.7746
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	52634901	75716440	14907	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	75718213	75736164	22	0.5887
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	75736363	97484644	9165	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	97507179	97528621	9	-1.0547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	97533310	106247145	5581	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	106247971	106253687	11	0.8869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	106253840	127558707	12412	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	127558794	127574416	12	0.956
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	127575116	142244569	8960	0.0254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	142244618	142244720	2	-1.7466
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	142246559	146580913	2564	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	146580927	146583404	21	0.7813
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	146594276	161261126	8823	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	161261487	161261577	2	-3.9687
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	161265302	184502045	14471	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	184502096	184519915	22	-0.5387
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	184522725	185024921	388	0.0757
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	185025125	185028304	4	1.3706
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	185033764	227050282	25610	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	227051032	227054312	5	-1.3437
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	2	227056043	242738129	9802	0.0251
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	35345	16214067	12946	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	16215560	16216183	6	-2.161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	16216329	20288129	2354	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	20290126	20291087	2	-2.6403
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	20303085	53003415	20469	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	53006776	53014495	40	-0.4548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	53014529	68828854	12031	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	68828949	68830103	14	-1.2369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	68831448	131245549	34731	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	131246388	131277494	43	0.5177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	131277660	153825517	14125	0.0129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	153829784	153839231	48	-0.5221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	153839324	164015644	6133	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	164017424	164022703	4	-0.5738
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	164023167	164023184	2	-2.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	164028410	164106591	46	0.7543
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	164108674	194363167	19200	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	194363281	194363536	4	-1.9028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	3	194365098	199380515	2715	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	2281	9832514	5804	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	9832726	9840596	27	-1.4558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	9843312	21654477	8760	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	21657735	21679799	23	-1.2357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	21683644	34467147	8215	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	34471867	34501120	29	0.7138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	34506267	69475459	19567	0.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	69477123	69485755	2	2.3907
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	69512426	70141375	308	-0.0428
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	70151531	70266713	65	0.3338
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	70270740	70424305	110	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	70424450	70425368	2	-2.9214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	70426477	115393149	27238	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	115394772	115403715	26	0.7966
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	115403759	138311689	13250	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	138311870	138312851	13	-0.7169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	138312864	153008843	8874	0.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	153009236	153012017	13	-0.8792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	153012341	171856665	12083	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	171861074	171862920	2	-2.351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	171863223	173224503	890	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	173225723	173226108	12	0.9166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	173232554	190432112	11731	0.0106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	190432616	190436258	3	-2.8399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	4	190436765	191261904	384	-0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	68532	786612	324	-0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	794695	916797	44	0.3796
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	919370	28687125	19594	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	28687209	28732777	32	-0.4378
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	28732841	46231871	10787	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	46235191	46235192	2	-2.1143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	46245056	46307687	16	0.1391
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	46308278	46309259	5	1.4428
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	46313969	57357403	5078	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	57361784	57369290	32	2.1026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	57374114	155409498	60323	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	155409576	155427831	14	-0.5906
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	5	155427835	180722926	16830	0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	94661	29958359	21758	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	29979615	30006876	12	-0.7966
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	30007656	31394255	658	0.0306
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	31394284	31404430	10	-1.452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	31417903	34045977	1385	0.0258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	34046721	34050683	7	-2.0655
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	34052564	54039043	12920	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	54039110	54039814	7	2.1362
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	54043307	58445398	2380	0.0129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	58447977	58494700	18	-0.636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	58497273	79019608	10899	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	79025784	79084234	106	-0.7777
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	79084489	103844669	15488	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	103844732	103868754	45	0.8358
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	6	103872163	170892930	44231	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	52911	54354004	38565	0.0128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	54354006	54354011	3	2.2991
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	54360982	61445606	2114	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	61449593	61479241	14	0.6161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	61483741	64300673	1021	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	64306907	64786641	221	-0.8516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	64798811	109224328	25424	0.0123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	109224329	109224993	13	0.7516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	109225008	109228159	9	0.0659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	109228448	109241094	11	0.8834
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	109241146	120982928	7076	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	120982979	120986822	3	-1.5307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	120988528	125832792	2957	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	125832887	125833851	10	-0.7626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	125834112	133435735	4706	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	133435751	133449386	34	0.594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	133449694	142154515	5693	0.0227
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	142156294	142159298	8	-3.1129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	142159383	142165422	17	-1.3756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	142165554	154020828	7333	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	154024104	154030546	4	-1.9682
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	7	154031763	158819765	3247	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	21254	7310973	7888	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	7316623	7390434	42	0.449
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	7390465	12242625	3382	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	12260380	12370481	65	0.4537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	12371893	13677383	1133	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	13677478	13677655	2	-2.0303
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	13678167	25030439	9329	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	25030494	25040167	23	-0.4814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	25047021	40302956	9679	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	40302962	40313586	34	-0.8261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	40313613	51194564	3970	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	51194577	51194940	7	-1.6958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	51201131	115703730	39278	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	115703829	115704296	6	-1.254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	115704404	121023961	3672	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	121024025	121024700	2	-2.2733
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	121027451	133362804	8665	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	133363054	133365409	2	-1.9557
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	133366375	137448409	3373	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	137450508	137450803	2	-2.1465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	8	137451141	146268959	5385	0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	36587	592903	510	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	596699	596961	4	-2.0924
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	597307	5069156	4732	0.0243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	5071416	5073003	12	-0.7185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	5073017	20088882	12808	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	20089091	20727485	474	-0.6107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	20727847	28293006	5682	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	28293017	28302061	8	0.9763
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	28306539	44746411	7250	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	44748482	44767041	4	-1.3282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	44770235	67673801	159	0.0817
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	67675871	67678367	8	1.3092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	9	67699736	140211215	48251	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	62759	46457573	31655	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	46461472	46479679	22	0.7804
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	46479752	61028273	9025	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	61034121	61034917	5	-1.934
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	61035080	68086363	4916	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	68086867	68107070	17	-0.5173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	68107621	94304215	17160	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	94307657	94311590	2	-1.9571
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	94316882	96922738	1539	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	96923139	96926647	2	1.8258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	96927444	135079131	26580	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	135079709	135079858	2	-2.5564
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	10	135082644	135356694	151	-0.0576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	188510	243390	36	0.0387
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	243662	244010	3	1.5013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	244064	4924226	2438	0.0239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	4924693	4930454	24	0.8792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	4930470	18896669	10251	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	18896898	18918511	59	0.3941
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	18918564	18928371	14	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	18928575	18932028	6	-0.9261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	18934236	24400825	4353	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	24402944	24406833	5	-1.1234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	24411752	37084025	9066	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	37084219	37084377	3	1.499
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	37084392	48729302	7246	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	48739706	48740073	4	-1.8696
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	48740294	55116129	1146	0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	55116144	55209110	62	0.3593
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	55209553	91470137	21389	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	91470306	91470691	2	2.4039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	11	91472352	134449982	31046	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	20703	226103	114	0.0636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	226700	227572	2	2.0704
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	227580	7682061	5164	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	7686179	7723694	29	-0.627
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	7723714	11112094	1964	0.0229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	11113635	11132799	10	-1.3221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	12	11143141	132288262	77780	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	13	17924949	68133659	33043	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	13	68136156	68166243	44	-0.6103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	13	68167120	114126499	31201	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	18072124	19227683	81	0.0779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	19270023	19490079	106	-0.4601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	19492423	40680246	13644	0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	40680440	40697979	3	-1.6764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	40698224	40723727	9	-3.6564
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	40726999	105601409	41287	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	105601732	105638145	17	0.8604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	14	105640508	106356482	417	0.0883
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	18276341	18682392	67	0.029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	18700552	20088838	353	-0.4734
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	20224763	28173703	4675	0.0234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	28185521	28579861	104	-0.7531
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	28583081	30299266	1075	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	30299512	30587119	39	-0.5878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	30598896	32501415	1497	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	32507087	32643110	73	-0.6417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	32645302	67116869	22205	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	67118339	67118414	2	2.2698
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	67124729	74665417	4248	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	74678296	74682253	14	0.6527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	15	74682399	100286563	17692	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	16	777	88396894	52342	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	16	88402719	88436012	21	-0.7586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	16	88436084	88815036	142	0.0755
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	17	526	41563921	23537	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	17	41564110	42107462	140	-0.4498
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	17	42107479	54463325	7798	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	17	54465858	54466899	2	1.9662
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	17	54481240	78643088	13822	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	18	1543	76116029	50796	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	41910	5457659	1598	0.0335
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	5461239	5461580	2	-2.2265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	5461653	15645152	5032	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	15651085	15652617	2	2.037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	15652664	19903422	2047	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	19907043	19907218	3	-1.2787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	19907969	20259772	207	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	20260440	20265380	4	-1.3023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	20267187	20944898	406	0.0367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	20944919	20945314	2	-1.979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	20946008	58211350	16622	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	58212193	58246052	21	0.6457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	19	58246131	63789666	3413	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	20	9305	1508999	1207	0.0367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	20	1509580	1541893	41	-1.046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	20	1545946	36444199	22571	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	20	36444220	36445424	3	-2.2774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	20	36445708	62426597	18672	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	21	9758742	46921385	24401	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	22	14432528	23980460	5456	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	22	23980648	24244024	297	0.4522
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	22	24244085	49581321	17811	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	108477	8206179	4307	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	8212375	8363172	143	0.4903
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	8364489	76266264	35679	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	76270041	76295047	3	-1.9528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	76295049	150043556	42025	0.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	150044592	150046117	2	-2.5191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	X	150047213	154835548	2429	0.0245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	2710438	3034832	147	-2.8043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	3034958	6177910	696	-2.3634
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	6180432	6356423	80	-3.6612
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	6359046	14099670	2615	-2.7887
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	14099736	14103917	3	-7.2169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	14104283	17543786	1822	-2.8023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	17547696	19547873	961	-3.287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	19551832	22268551	1051	-2.8181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	22268856	25040317	603	-3.1493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	25040616	25725360	84	-3.875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	25776875	26104483	88	-2.4597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	26127187	26833326	256	-3.4107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C12_802062	Y	26847504	57427647	183	-2.5048
