Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	1	3208470	245880329	128918	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	2	474222	166486429	87599	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	2	166489434	166489815	2	-1.6902
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	2	166496866	238587040	41687	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	2	238594869	238730377	78	0.5696
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	2	238739675	242124735	1803	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	3	526235	199023074	106275	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	4	1043934	76531319	41038	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	4	76533317	76537531	3	-1.4828
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	4	76538003	87268401	6511	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	4	87272177	87274000	2	-1.6263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	4	87279917	189836143	55067	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	5	967233	180293075	100395	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	6	959281	150031150	84224	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	6	150038413	150038687	2	-1.7688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	6	150041480	170745844	12142	-0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	7	671810	158077879	81246	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	8	607667	145304484	81452	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	9	779932	28416553	17456	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	9	28416757	28417231	4	-1.5443
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	9	28423220	140058573	50495	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	10	405240	135075077	80775	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	11	446120	133647740	77185	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	12	760163	131671419	73867	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	13	18348806	114005560	56563	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	14	19571208	105059083	49386	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	15	21238778	99701830	44481	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	16	593460	87907437	40836	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	17	933971	50521793	22247	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	17	50526882	50551290	18	0.5185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	17	50556452	78510305	14688	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	18	319586	75210228	42616	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	19	235018	34552764	10254	-0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	19	34553140	34556921	6	-0.9461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	19	34557185	53223124	9484	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	19	53223142	53223144	2	-1.2593
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	19	53223188	63570038	4190	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	20	403764	46551172	27298	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	20	46551183	46569301	3	-1.601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	20	46569408	61690281	9952	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	21	14269492	46503202	20565	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	22	15803930	47717016	16917	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	X	3167107	16166257	5163	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	X	16170634	16171171	2	-1.7316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	X	16171597	123423327	44805	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	X	123423687	123423700	2	-1.8905
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D04_801974	X	123425218	154558783	13761	0.0062
