Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	3208470	36639821	17560	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	36645252	36645836	3	-2.8677
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	36645905	216247153	92648	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	216248846	216248880	3	-1.3322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	216260138	245880329	18734	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	2	474222	242124735	131192	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	3	526235	199023074	106292	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	1043934	86862766	47291	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	86862881	86863126	3	1.1722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	86863154	162413794	41620	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	162413989	162424561	14	-0.8785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	162439787	189836143	13698	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	5	967233	180293075	100404	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	959281	35775383	20550	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	35775838	35813350	25	0.6311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	35814148	52327926	10229	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	52328752	52345282	8	0.8334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	52345883	89334538	17981	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	89340359	89340391	2	1.3337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	89340833	135377122	26480	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	135383947	135384931	2	-1.3445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	135391263	170745844	21108	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	671810	5587910	1872	-0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	5592593	5592847	2	-1.3378
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	5597790	107960359	52933	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	107963577	107964211	2	-1.2252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	107966754	123750845	8320	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	123754647	123754942	2	-1.4701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	123755226	158077879	18119	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	607667	101725240	55320	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	101726382	101732662	7	-0.7842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	101733091	145304484	26137	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	779932	19545472	11718	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	19545583	19545619	2	-1.3447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	19545984	140058573	56239	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	405240	106836224	62314	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	106836409	106862096	12	-0.5281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	106862575	135075077	18469	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	446120	90576452	48829	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	90577056	90577338	2	-1.2633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	90584434	101929543	7316	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	101929838	101944733	14	0.4887
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	101948481	105814931	2246	-0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	105816818	105817125	3	0.9869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	105818542	133647740	18780	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	12	760163	131671419	73875	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	13	18348806	114005560	56576	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	14	19571208	105059083	49398	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	21238778	60703823	21993	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	60703964	60705306	3	-0.9786
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	60705727	95350225	20058	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	95350621	95353264	2	-1.1429
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	95353461	99701830	2428	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	16	593460	87907437	40844	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	17	933971	78510305	36961	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	319586	5265277	2519	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	5272442	5272665	2	-1.8858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	5280198	75210228	40094	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	235018	7351633	2051	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	7357300	7360022	3	-1.038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	7366859	63570038	21885	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	20	403764	61690281	37257	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	21	14269492	46503202	20567	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	22	15803930	47717016	16918	-0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	X	3167107	154558783	63737	0.0012
