Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	3218610	36867234	17558	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	36872665	36873249	3	-2.8677
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	36873318	218180530	92707	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	218182223	218182257	3	-1.3322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	1	218193515	247813706	18731	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	2	484222	242476062	131184	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	3	2212571	197538677	106286	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	1053934	86643742	47289	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	86643857	86644102	3	1.1722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	86644130	162194344	41627	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	162194539	162205111	14	-0.8785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	4	162220337	188763651	13698	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	5	914233	180360469	100404	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	1014281	35667405	20551	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	35667860	35705372	25	0.6311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	35706170	52219967	10230	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	52220793	52237323	8	0.8334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	52237924	89277819	17981	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	89283640	89283672	2	1.3337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	89284114	135335429	26485	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	135342254	135343238	2	-1.3445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	6	135349570	170903919	21110	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	705284	5621384	1872	-0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	5626067	5626321	2	-1.3378
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	5631264	108173123	52934	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	108176341	108176975	2	-1.2252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	108179518	123963609	8322	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	123967411	123967706	2	-1.4701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	7	123967990	158385118	18117	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	617667	101656064	55324	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	101657206	101663486	7	-0.7842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	8	101663915	145232496	26140	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	789932	19555472	11720	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	19555583	19555619	2	-1.3447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	9	19555984	140938752	56249	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	415240	106846234	62312	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	106846419	106872106	12	-0.5281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	10	106872585	135225087	18469	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	456120	90936804	48825	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	90937408	90937690	2	-1.2633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	90944786	102424333	7313	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	102424628	102439523	14	0.4887
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	102443271	106309721	2245	-0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	106311608	106311915	3	0.9869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	11	106313332	134142530	18778	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	12	889902	133161346	73870	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	13	19450806	114987458	56572	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	14	20501368	105988038	49396	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	23687685	62916531	21992	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	62916672	62918014	3	-0.9786
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	15	62918435	101884307	22487	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	16	653459	89379936	40780	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	17	987221	80917016	36961	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	329586	5275277	2521	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	5282442	5282665	2	-1.8858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	18	5290198	77109240	40089	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	284018	7445633	2051	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	7451300	7454022	3	-1.038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	19	7460859	58878226	21885	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	20	455764	62219837	37260	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	21	15347621	47678774	20566	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	22	17423930	49331012	16917	-0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D12_801954	X	3157107	154905589	63754	0.0012
