Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	51598	25465715	14157	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25468468	25484039	13	-1.9812
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25488883	25519533	13	-0.7775
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25519573	72541086	28750	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72541504	72551668	10	-0.8748
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72551679	72556536	4	0.6757
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72556742	72581960	26	-0.8252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72582019	111177743	24567	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	111178891	111189749	39	-0.7325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	111193590	150826908	9145	0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	150827165	150852862	23	-1.5056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	150852902	194977810	29727	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	194981445	195068065	88	0.4854
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	195068278	202171726	4561	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	202172751	202189118	13	-0.6654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	202189816	224071185	15048	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	224072721	224074113	2	1.9653
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	224074724	238458363	10381	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	238460638	238460762	6	-1.309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	238462728	247191011	5928	0.0311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	2784	4194344	2992	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	4194780	4200307	25	-0.4479
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	4200359	17084646	9831	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	17084801	17101386	46	-0.7103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	17101442	32584393	9745	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	32585422	32587790	2	1.7724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	32589337	35829477	2382	0.035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	35831294	35841420	6	-1.496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	35841451	82047874	31395	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	82050456	82171367	71	0.8716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	82172828	86791198	2650	0.0241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	86806581	86807365	2	-1.5313
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	86823917	87303980	137	0.1203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	87306265	87310373	3	-1.1821
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	87325354	89573808	809	0.0339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	89597067	89609986	3	2.0266
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	89612925	97391786	1188	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	97429511	97528621	12	-0.7547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	97533310	106247145	5577	0.0237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	106247971	106251789	10	0.8681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	106253687	129354548	13448	0.0274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	129354948	129356767	14	-0.6733
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	129356785	131055122	1002	0.0413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	131108215	131123659	2	1.6032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	131194418	146578555	9472	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	146580874	146594276	25	0.7598
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	146594865	185024921	23698	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	185025125	185028304	4	1.7613
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	185033764	196148475	6152	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196151214	196151995	2	-1.6977
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196152474	208063157	7111	0.0231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208063200	208067394	16	-0.654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208067581	208737565	394	0.0345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208741826	208762554	13	-1.0521
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208763493	242738129	21715	0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	35345	21605426	16195	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21605456	21606334	2	-2.1258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21606670	41798842	14060	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	41799327	41802182	4	-1.186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	41805646	41998997	77	-0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	42003235	42006698	2	-2.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	42015970	47453513	3199	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	47466826	47467724	2	-1.7137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	47472218	100427989	30264	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	100428085	100431766	15	-0.8333
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	100431798	163990872	39061	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	163990886	164109266	73	0.5682
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	164109297	176723336	7811	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	176724080	176726417	4	-1.2523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	176728521	189077988	7537	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	189078072	189078407	2	1.6611
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	189078434	194357441	3825	0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	194360596	194365597	20	0.9559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	194369129	199380515	2705	0.0279
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	2281	9819488	5798	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	9832514	9844105	32	0.6767
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	9844264	10008433	186	-0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10008453	10009766	4	-1.151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10011816	34455449	16781	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	34462895	34501120	38	-2.2328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	34506267	48901196	8976	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	48911291	49353369	28	-0.6434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	52380456	69054598	10479	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	69057536	69166644	61	0.6098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	69166682	70158099	336	-0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	70162233	70266388	54	-1.6462
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	70266611	72624553	1287	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	72625330	72625593	2	1.758
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	72629212	87045813	9045	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	87050138	87055431	3	-1.371
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	87055447	104965020	10695	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	104971079	104971086	5	1.1929
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	104971093	108287862	1877	0.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	108290968	108291337	4	1.3209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	108292956	115393149	4426	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115394772	115401624	23	-1.1394
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115403678	115727073	225	0.0417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115727615	115733875	4	-1.0874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115734189	122501423	4118	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	122501918	122504585	28	-0.5059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	122510581	153011087	17766	0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	153011104	153012017	10	-1.0458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	153012341	172605921	12557	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172611459	172614285	10	3.2619
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172614299	172614351	2	1.4001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172616946	173224503	396	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	173225723	173226080	10	-1.351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	173226094	191261904	12109	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	68532	1611048	733	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	1612341	1613497	3	-1.5905
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	1613716	12838251	9467	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	12838262	12902201	20	0.6912
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	12910133	21485033	5531	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	21486957	21488195	5	-2.0252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	21488253	29113404	4465	0.0221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	29113539	29113751	7	-0.9806
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	29113792	46306865	10547	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	46307687	46309259	6	-2.3243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	46313969	177131055	80250	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	177160157	177165211	3	2.7017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	177187571	180311494	1815	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	180312809	180347071	12	0.9275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	180349813	180722926	176	-0.0239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	94661	275704	140	-0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	276812	306022	43	0.3386
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	306129	29945166	21550	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	29945167	29957246	15	-0.6675
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	29958175	31388802	672	-0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	31394255	31404430	11	1.2025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	31417903	32557501	506	-0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32560779	32682359	39	0.7957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32686060	32703061	13	-0.1732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32703210	32710085	3	-1.7316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32710247	65767450	18348	0.0123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	65768120	65770513	3	-3.6953
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	65774105	66445882	453	-0.0331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	66450069	66456472	8	0.7559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	66456482	77492878	7236	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	77493251	77517792	23	-0.5124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	77524650	103841522	16563	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103844669	103858031	19	-0.6238
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103858257	103868754	27	-1.6063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103872163	170892930	44223	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	52911	22401305	16085	0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	22401997	22403012	2	-2.3287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	22405279	38245408	11316	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	38246749	38353316	127	-0.382
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	38353337	54353999	11012	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	54354003	54354011	5	2.4259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	54360982	57011783	1629	0.0257
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	57069302	57088074	4	1.3357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	57120410	109220983	27149	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	109221013	109228448	27	-0.4828
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	109228480	109241146	11	-1.7836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	109241218	142154515	20472	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	142156294	142176424	30	-1.9314
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	142186163	143504310	835	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	143504885	143697880	45	-0.4816
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	143705862	158819765	9695	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	21254	583041	326	-0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	584944	585875	8	1.0526
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	585892	585908	2	4.3502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	591043	5540439	5694	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	5540475	5540508	2	-2.608
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	5540543	7202021	1800	-0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	7202078	7820572	159	0.4962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	7820591	10212955	1945	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	10213587	10215947	3	1.4778
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	10218816	12313350	1418	-0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	12314083	12517914	55	0.3709
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	12517929	14391356	1782	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14391437	14393609	3	-1.6451
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14396454	25032119	8639	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	25032453	25035904	14	-0.8132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	25039986	33884463	6049	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	33884668	33889334	3	1.2215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	33889612	37324659	1969	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37326977	37346889	25	-0.8761
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37354229	39365832	988	0.0296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	39366268	39506122	57	0.8923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	39507456	112363642	42031	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	112363822	112364436	7	-2.0546
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	112369457	115649547	1798	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	115649741	115649994	2	-2.6343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	115656237	146268959	21127	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	36587	41723631	31314	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	41832529	41968375	8	-1.2321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	41975187	44569219	115	0.0816
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	44667855	44777523	34	-1.1349
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	44780914	140211215	48390	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	62759	17967560	14873	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	17978214	17989863	2	2.4534
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	18011822	18213969	13	0.1894
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	18225129	18239819	3	-2.1066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	18263653	20893207	2138	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	20893278	20893509	2	-2.9149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	20893540	88937041	42162	0.0129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	88939407	89059776	13	0.6444
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	89060725	135356694	31816	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	188510	6060630	3566	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	6060657	6078670	14	-0.7284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	6079079	18896898	9166	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	18897432	18918564	59	0.3505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	18918592	31349870	9092	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	31350844	31353656	2	-3.5042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	31354783	37088830	4355	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	37089735	37090734	9	0.8859
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	37090747	55132599	8383	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	55132812	55203813	49	-0.3779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	55203908	59883974	2888	0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	59884747	59884897	2	-1.8432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	59885029	81175555	11723	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	81176453	81194806	12	-0.594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	81200280	85565605	2865	0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	85567306	85573945	13	-0.8665
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	85575728	132612506	33539	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	132615166	132615571	2	-3.1547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	132616570	134449982	1354	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	20703	9521823	6202	0.0318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	9525137	9619559	24	-1.5339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	9626236	11110690	1043	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11111991	11158098	17	-0.8772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11158974	11395358	127	0.0519
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11402844	11434673	32	-0.7735
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11443459	33185927	15410	0.022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	33192673	33198641	27	-0.7055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	33199627	62385219	16328	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	62390656	62422921	16	-0.6425
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	62429455	71528383	6001	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	71531671	71531672	2	1.7058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	71539459	98319599	17011	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	98319779	98322865	29	-0.4476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	98327224	125691333	17776	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	125691697	125696445	2	1.8178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	125696993	130038106	3817	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	130038977	130040418	4	-1.6751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	130040458	132288262	1151	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	17924949	71374989	35131	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	71375556	71377548	2	-3.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	71378450	114126499	29125	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	18072124	18860355	57	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	18862968	19490079	131	-0.3012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	19492423	19620380	95	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	19623124	19625036	2	1.5753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	19627107	21632094	1397	-0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	21632122	22029666	348	-0.3599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	22029777	88462751	42401	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	88464992	88466026	2	-1.768
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	88467934	105362026	10584	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	105362258	105374087	7	0.8835
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	105374417	105822329	176	-0.0599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	105824904	105824912	3	1.7842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	105825048	106356482	330	0.0807
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	18276341	18529787	57	0.0409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	18544080	18838435	41	0.4633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	18841465	18841469	5	-0.4618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	18841576	20085795	316	0.4836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20088324	20232614	5	-1.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20302458	54576939	21127	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	54577995	54600698	31	-0.5421
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	54608203	74678566	12741	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	74678682	74689296	23	0.6626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	74689312	100286563	17665	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	777	16542549	11795	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	16543116	16564961	5	1.2171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	16571077	19848764	1719	0.0236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	19849469	19874863	33	-0.5015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	19877755	76929109	28288	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	76929941	76942266	17	0.8244
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	76942502	81641791	5161	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	81641885	81641951	2	-2.5644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	81642193	82933207	1489	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	82937210	82939054	4	-1.4082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	82940044	88815036	3977	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	526	18876248	11637	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	18891592	18991651	10	-1.0982
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	19034043	31460821	6731	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	31461241	31509204	37	0.7265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	31552238	41208734	4857	0.0232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41210994	41212995	2	-1.6644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41219629	41569943	255	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41571141	41707062	79	-0.3377
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41707463	41860676	21	0.1392
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41879021	41879036	2	1.9623
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	41901645	76243458	20680	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	76244388	76248774	2	1.9962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	76248895	78643088	961	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	1543	36512614	22815	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	36512703	36519387	21	-0.5911
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	36522022	49458133	8907	0.0237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	49461207	49464638	5	-1.1448
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	49466146	61913280	8647	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	61918120	61926575	4	-1.7268
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	61928110	76116029	10369	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	41910	7544646	2612	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	7544775	7546617	3	1.4079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	7559218	12553001	2460	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	12558366	12559102	2	-1.5483
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	12561523	21606759	4602	0.0277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	21607480	21611709	2	1.8609
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	21611951	48302909	11032	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	48305115	48314237	3	-1.3624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	48315313	56834427	4240	0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	56834742	56840009	9	-0.8782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	56846717	58210326	947	0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	58210559	58244041	22	1.1406
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	58246052	59990392	1087	0.0397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	59991881	60040503	27	-1.0008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	60052350	63632326	2246	0.03
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	63635220	63636187	2	-3.9113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	63637868	63789666	52	0.1449
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	9305	12975313	10088	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	12977764	12977862	2	-2.0459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	12982705	62426597	32384	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	21	9758742	46921385	24389	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	14432528	21592981	3920	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	21593242	21593257	2	-2.6053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	21593274	49581321	19625	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	108477	88699278	46894	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	88700630	88703924	2	-2.2017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	88708939	103147975	7487	0.0209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	103148066	103191966	50	0.5835
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	103192014	115051983	6361	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	115052431	115064666	6	-2.2586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	115070447	154835548	23768	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	2710438	6161425	838	-2.3527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	6167901	17679836	4583	-2.772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	17688729	17688934	3	-7.5064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	17691665	18084284	196	-2.7568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	18085938	19547685	703	-3.3197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	19547873	22926363	1247	-2.8037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	22934748	24627620	318	-3.3345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	24632208	24878447	71	-2.4818
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	24883344	25846090	105	-3.5562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	25854303	26129939	91	-2.5167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	26130472	26833326	251	-3.357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	26847504	57427647	183	-2.4022
