Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	61735	25593128	14155	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25595881	25611452	13	-1.9812
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25616296	25646946	13	-0.7775
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	25646986	72768498	28827	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72768916	72809372	40	-0.6875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	72809431	111376220	24558	0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	111377368	111388226	39	-0.7325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	111392067	152560284	9142	0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	152560541	152586238	23	-1.5056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	152586278	196711187	29726	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	196714822	196801442	88	0.4854
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	196801655	203905103	4561	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	203906128	203922495	13	-0.6654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	203923193	226004562	15048	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	226006098	226007490	2	1.9653
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	226008101	240391740	10380	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	240394015	240394139	6	-1.309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	240396105	249224388	5927	0.0311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	12784	4216469	2992	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	4216905	4222432	25	-0.4479
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	4222484	17221165	9829	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	17221320	17237905	46	-0.7103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	17237961	32730889	9745	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	32731918	32734286	2	1.7724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	32735833	35975973	2382	0.035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	35977790	35987916	6	-1.496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	35987947	82194363	31389	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	82196945	82317856	71	0.8716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	82319317	89936766	3598	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	89959761	89972681	3	2.0266
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	89975620	98025647	1188	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	98063372	98162189	12	-0.7547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	98166878	106880713	5577	0.0237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	106881539	106885357	10	0.8681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	106887255	129638078	13447	0.0274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	129638478	129640297	14	-0.6733
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	129640315	131338652	1000	0.0408
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	131391745	131407189	2	1.6032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	131477948	146862085	9471	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	146864404	146877806	25	0.7598
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	146878395	185316676	23698	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	185316880	185320059	4	1.7613
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	185325519	196440230	6154	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196442969	196443750	2	-1.6977
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196444229	208354912	7112	0.0231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208354955	208359149	16	-0.654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	208359336	209029320	394	0.0345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	209033581	209054309	13	-1.0521
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	209055248	243089456	21715	0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	60345	21630422	16195	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21630452	21631330	2	-2.1258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21631666	41823838	14060	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	41824323	41827178	4	-1.186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	41830642	42023993	77	-0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	42028231	42031694	2	-2.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	42040966	47478509	3199	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	47491822	47492720	2	-1.7137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	47497214	98945299	30258	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	98945395	98949076	15	-0.8333
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	98949108	162508178	39060	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	162508192	162626572	73	0.5682
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	162626603	175240642	7812	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	175241386	175243723	4	-1.2523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	175245827	187595294	7537	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	187595378	187595713	2	1.6611
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	187595740	192874747	3825	0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	192877902	192882903	20	0.9559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	192886435	197896118	2705	0.0279
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	12281	10210390	5798	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10223416	10235007	32	0.6767
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10235166	10399335	186	-0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10399355	10400668	4	-1.151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	10402718	34779054	16782	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	34786500	34824725	38	-2.2328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	34829872	49206439	8975	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	49216534	49658612	28	-0.6434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	52685699	69372003	10483	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	69374941	69484049	61	0.6098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	69484087	70123510	332	-0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	70127644	70231799	54	-1.6462
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	70232022	72405689	1287	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	72406466	72406729	2	1.758
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	72410348	86826789	9046	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	86831114	86836407	3	-1.371
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	86836423	104745571	10697	0.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	104751630	104751637	5	1.1929
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	104751644	108068413	1877	0.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	108071519	108071888	4	1.3209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	108073507	115173700	4426	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115175323	115182175	23	-1.1394
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115184229	115507624	225	0.0417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115508166	115514426	4	-1.0874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	115514740	122281973	4120	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	122282468	122285135	28	-0.5059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	122291131	152791637	17768	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	152791654	152792567	10	-1.0458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	152792891	172369346	12557	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172374884	172377710	10	3.2619
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172377724	172377776	2	1.4001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172380371	172987928	396	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172989148	172989505	10	-1.351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	172989519	191027923	12108	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	15532	1558048	732	-0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	1559341	1560497	3	-1.5905
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	1560716	12785251	9470	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	12785262	12849201	20	0.6912
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	12857133	21449276	5531	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	21451200	21452438	5	-2.0252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	21452496	29077647	4464	0.022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	29077782	29077994	7	-0.9806
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	29078035	46271108	10545	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	46271930	46273502	6	-2.3243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	46278212	177198449	80252	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	177227551	177232605	3	2.7017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	177254965	180378888	1815	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	180380203	180414465	12	0.9275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	180417207	180790320	176	-0.0239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	149661	330704	140	-0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	331812	361022	43	0.3386
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	361129	29837187	21549	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	29837188	29849267	15	-0.6675
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	29850196	31280823	672	-0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	31286276	31296451	11	1.2025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	31309924	32449523	506	-0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32452801	32574381	39	0.7957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32578082	32595083	13	-0.1732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32595232	32602107	3	-1.7316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	32602269	65710729	18350	0.0123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	65711399	65713792	3	-3.6953
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	65717384	66389161	453	-0.0331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	66393348	66399751	8	0.7559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	66399761	77436159	7235	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	77436532	77461073	23	-0.5124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	77467931	103734829	16562	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103737976	103751338	19	-0.6238
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103751564	103762061	27	-1.6063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	103765470	171051005	44230	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	43355	22434780	16085	0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	22435472	22436487	2	-2.3287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	22438754	38278883	11314	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	38280224	38386791	127	-0.382
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	38386812	54386505	11010	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	54386509	54386517	5	2.4259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	54393488	109441212	28815	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	109441244	109453910	11	-1.7836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	109453982	142331352	20387	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	142337300	142474939	87	-0.3804
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	142476719	142486345	29	-1.9461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	142486495	143873377	834	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	143873952	144066947	45	-0.4816
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	144074929	159127004	9696	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	31254	593041	326	-0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	594944	595875	8	1.0526
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	595892	595908	2	4.3502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	601043	5553031	5695	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	5553067	5553100	2	-2.608
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	5553135	7214611	1800	-0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	7214668	7783162	159	0.4962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	7783181	12268979	3364	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	12269712	12473543	56	0.3637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	12473558	14346985	1782	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14347066	14349238	3	-1.6451
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14352083	24976202	8639	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	24976536	24979987	14	-0.8132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	24984069	33764921	6050	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	33765126	33769792	3	1.2215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	33770070	37205501	1969	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37207819	37227731	25	-0.8761
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37235071	39246675	988	0.0296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	39247111	39386965	57	0.8923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	39388299	112294466	42035	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	112294646	112295260	7	-2.0546
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	112300281	115580371	1801	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	115580565	115580818	2	-2.6343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	115587061	146298155	21126	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	46587	41733631	31322	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	41842529	41978375	8	-1.2321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	41985187	44629223	115	0.0816
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	44727859	44837527	34	-1.1349
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	44840918	141091394	48397	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	72759	17927554	14873	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	17938208	17949857	2	2.4534
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	17971816	18173963	13	0.1894
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	18185123	18199813	3	-2.1066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	18223647	20853201	2137	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	20853272	20853503	2	-2.9149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	20853534	135506704	73989	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	198510	6104054	3565	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	6104081	6122094	14	-0.7284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	6122503	18940322	9166	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	18940856	18961988	59	0.3505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	18962016	31393294	9090	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	31394268	31397080	2	-3.5042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	31398207	37132254	4355	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	37133159	37134158	9	0.8859
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	37134171	55376023	8382	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	55376236	55447237	49	-0.3779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	55447332	60127398	2888	0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	60128171	60128321	2	-1.8432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	60128453	81497907	11723	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	81498805	81517158	12	-0.594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	81522632	85887957	2865	0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	85889658	85896297	13	-0.8665
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	85898080	133107296	33532	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	133109956	133110361	2	-3.1547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	133111360	134944770	1354	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	150442	9630556	6201	0.032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	9633870	9728292	25	-1.5021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	9734969	11219423	1042	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11220724	11266831	17	-0.8772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11267707	11504091	127	0.0519
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11511577	11543406	32	-0.7735
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	11552192	33294660	15407	0.022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	33301406	33307374	27	-0.7055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	33308360	64098952	16326	0.0227
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	64104389	64136654	16	-0.6425
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	64143188	73242116	6001	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	73245404	73245405	2	1.7058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	73253192	99795468	17011	0.0106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	99795648	99798734	29	-0.4476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	99803093	127125380	17774	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	127125744	127130492	2	1.8178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	127131040	131472153	3817	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	131473024	131474465	4	-1.6751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	131474505	133778189	1151	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	19026949	72476988	35128	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	72477555	72479547	2	-3.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	72480449	115108397	29124	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	19002124	19790355	57	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	19792968	20420239	131	-0.3012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	20422583	20550540	95	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	20553284	20555196	2	1.5753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	20557267	22562254	1397	-0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	22562282	22959826	348	-0.3599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	22959937	89392998	42398	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	89395239	89396273	2	-1.768
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	89398181	106290981	10584	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	106291213	106303042	7	0.8835
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	106303372	106751284	176	-0.0599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	106753859	106753867	3	1.7842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	106754003	107285437	330	0.0807
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20016328	20269773	57	0.0409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20284066	20578421	41	0.4633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20581451	20581455	5	-0.4618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	20581562	22584431	316	0.4836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	22586960	22681250	5	-1.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	22751094	56789647	21127	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	56790703	56813406	31	-0.5421
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	56820911	76891511	12739	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	76891627	76902241	23	0.6626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	76902257	102469040	17664	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	60777	16635048	11794	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	16635615	16657460	5	1.2171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	16663576	19941263	1719	0.0236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	19941968	19967362	33	-0.5015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	19970254	78371608	28208	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	78372440	78384765	17	0.8244
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	78385001	83084290	5161	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	83084384	83084450	2	-2.5644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	83084692	84375706	1489	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	84379709	84381553	4	-1.4082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	84382543	90287535	3980	-0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	526	18935523	11638	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	18950867	19050926	10	-1.0982
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	19093450	34436708	6731	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	34437128	34485091	37	0.7265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	34528125	43852968	4855	0.0232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	43855228	43857229	2	-1.6644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	43863865	44214166	255	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	44215364	44351285	79	-0.3377
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	44351686	44505241	21	0.1392
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	44523711	44523726	2	1.9623
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	44546329	78628863	20681	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	78629793	78634179	2	1.9962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	78634300	81049726	961	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	11543	38258616	22814	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	38258705	38265389	21	-0.5911
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	38268024	51204135	8906	0.0237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	51207209	51210640	5	-1.1448
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	51212148	63762300	8646	0.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	63767140	63775595	4	-1.7268
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	63777130	78015057	10369	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	90910	7638646	2612	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	7638775	7640617	3	1.4079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	7653218	12692001	2460	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	12697366	12698102	2	-1.5483
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	12700523	21814919	4601	0.0278
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	21815640	21819869	2	1.8609
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	21820111	35849322	7138	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	35849493	35861170	18	-0.4907
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	35861649	36758897	437	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	36805705	36807300	3	-1.1913
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	36825248	43611069	3436	0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	43613275	43622397	3	-1.3624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	43623473	52142615	4240	0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	52142930	52148197	9	-0.8782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	52154905	53518514	947	0.0265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	53518747	53552229	22	1.1406
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	53554240	55298580	1087	0.0397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	55300069	55348691	27	-1.0008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	55360538	58940514	2246	0.03
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	58943408	58944375	2	-3.9113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	58946056	59097854	52	0.1449
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	61305	13027313	10091	0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	13029764	13029862	2	-2.0459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	13034705	62956153	32384	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	21	10736871	48096957	24388	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	16052528	23262981	3920	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	23263242	23263257	2	-2.6053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	23263274	51234455	19625	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	168477	103261319	54366	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	103261410	103305310	50	0.5835
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	103305358	115137955	6363	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	115138403	115150638	6	-2.2586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	115156419	155182354	23770	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	2650438	6101425	871	-2.2952
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	6107901	6327325	99	-3.4384
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	6327861	19170442	4495	-2.7516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	19179335	19179540	3	-7.5064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	19182271	19574890	196	-2.7568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	19576544	21088297	703	-3.3197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	21088485	24516975	1248	-2.8024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	24525360	26218232	318	-3.3345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	26222820	26469059	71	-2.4818
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	26473956	27436702	105	-3.5562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	27444915	27720551	91	-2.5167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	27721084	28452016	258	-3.337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	Y	28457337	59018259	176	-2.3936
