Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	3218610	113281188	63262	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	113281697	113282349	2	-1.6637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	1	113284079	247813706	65706	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	484222	196440230	103749	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196442969	196443750	2	-1.7111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	2	196444229	242476062	27393	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	2212571	7057492	2337	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	7057845	7058682	3	-1.5157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	7059279	21630422	9140	-0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21630452	21631330	2	-2.1413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	3	21631666	197538677	94788	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	4	1053934	188763651	102599	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	5	914233	180360469	100385	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	6	1014281	170903919	96383	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	705284	145192317	74393	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	145192718	145192893	2	-1.689
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	7	145192945	158385118	6841	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	617667	14346985	6392	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14347066	14349238	3	-1.66
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	14352083	37205501	15196	-0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37207819	37227731	25	-0.8878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	8	37235071	145232496	59840	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	789932	2481455	1070	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	2481651	2481683	2	-1.3597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	2483527	17412099	8907	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	17413556	17413714	2	-1.7781
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	17417517	33005741	9867	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	33005757	33005763	2	-1.8866
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	9	33007206	140938752	48105	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	10	415240	135225087	80768	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	456120	60127398	32828	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	60128171	60128321	2	-1.8559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	11	60128453	134142530	44333	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	12	889902	133161346	73849	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	13	19450806	114987458	56567	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	14	20501368	105988038	49373	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	23687685	80691036	32136	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	80692981	80694922	2	-1.7154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	15	80695115	101884307	12328	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	653459	75795026	31364	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	75796961	75798379	2	-1.6902
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	16	75798491	89379936	9400	-0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	17	987221	80917016	36952	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	329586	10750430	6119	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	10751624	10752237	3	-1.5598
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	18	10752666	77109240	36477	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	19	284018	58878226	23938	-0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	455764	13027313	8018	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	13029764	13029862	2	-2.0605
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	20	13034705	62219837	29232	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	21	15347621	47678774	20559	-0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	22	17423930	49331012	16909	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	3157107	119571041	47938	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	119571058	119571073	2	-1.6099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E01_802012	X	119572941	154905589	15799	0.0012
