Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	1	3218610	103657530	58009	-0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	1	103658893	103661417	2	-1.947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	1	103662258	167495094	20370	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	1	167495330	167496674	2	-1.7147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	1	167499197	247813706	50642	0.029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	2	484222	234084130	125998	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	2	234090096	234092029	2	-1.8333
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	2	234096236	242476062	5192	-0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	3	2212571	197538677	106300	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	4	1053934	188763651	102651	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	5	914233	180360469	100414	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	6	1014281	170903919	96406	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	7	705284	118845919	60308	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	7	118852376	119031785	84	-0.9705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	7	119033958	158385118	20873	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	8	617667	145232496	81471	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	789932	14102612	7322	-0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	14103242	14103618	3	-1.5321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	14105813	88278051	28092	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	88278193	88279324	3	-1.0875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	88279765	98226359	6193	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	98226403	98226700	2	-2.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	98226750	126306780	18852	-0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	126312734	126312791	2	-1.5868
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	9	126313714	140938752	7513	-0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	10	415240	54196541	30776	-0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	10	54196723	54197120	2	-2.0792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	10	54197506	113991397	36245	-0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	10	113992861	113993061	3	-1.4233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	10	113995026	135225087	13779	-0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	11	456120	134142530	77189	-0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	12	889902	133161346	73885	-0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	13	19450806	114987458	56583	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	14	20501368	49333294	14628	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	14	49333802	49334734	2	-2.0864
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	14	49337432	105988038	34766	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	15	23687685	101884307	44489	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	16	653459	83793995	38134	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	16	83793997	83794006	2	-1.887
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	16	83794024	89379936	2647	-0.0208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	17	987221	18860763	8835	-0.2697
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	17	19152102	80917016	28129	0.2112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	18	329586	77109240	42612	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	19	284018	58878226	23943	-0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	20	455764	62219837	37262	-0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	21	15347621	47678774	20566	-0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	22	17423930	49331012	16915	-0.0255
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	X	3157107	145164887	59765	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	X	145166871	145167102	2	1.4479
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E02_801938	X	145167249	154905589	3990	0.0076
