Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	51598	17062591	8832	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	17063449	17134834	62	0.4027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	17148828	25465715	5274	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	25468468	25519573	27	0.6905
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	25534088	34864261	4971	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	34875241	34886855	21	-0.505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	34888129	72541504	23780	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	72541524	72583721	44	-0.6676
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	72583736	103959832	20080	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	103960870	104061555	26	-0.4004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	104061762	110034641	3613	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	110034785	110038455	9	-0.9878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	110038470	150821800	10018	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	150822151	150853218	36	0.5693
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	150857118	151021254	164	-0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	151022932	151045067	47	0.3729
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	151045150	173063028	14859	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	173063179	173069074	24	-0.5424
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	173069464	177597151	3073	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	177598005	177599938	3	-1.3626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	177605829	200834176	15363	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	200834336	200834409	2	1.7063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	200835165	208137685	5116	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	208148236	208160194	6	-1.3229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	208160272	218154326	7030	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	218154670	218179823	18	0.543
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	218184473	238433135	14103	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	238434130	238434145	2	-1.4807
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	238434398	238458363	33	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	238460638	238460762	6	-1.5452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	1	238462728	247191011	5929	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	2784	14619800	11044	0.0129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	14620958	14620974	2	1.6047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	14621083	34528971	13059	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	34534998	34564232	13	-0.667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	34564314	34571412	20	-0.0827
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	34571478	34590017	16	-0.7048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	34590561	52607972	13045	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	52607984	52635046	39	-2.0701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	52641453	129354948	43140	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	129354972	129355706	12	-0.6597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	129356767	146580927	10485	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	146581053	146594276	21	0.8794
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	2	146594865	242738129	59137	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	3	35345	6621543	5844	0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	3	6626128	6628332	23	-0.7642
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	3	6630078	68808441	41981	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	3	68814718	68830103	16	1.1097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	3	68831448	199380515	77052	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	2281	250626	153	-0.1287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	250639	250807	2	1.4261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	256863	396376	47	0.075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	397068	397084	2	-1.3431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	408144	4217419	1513	-0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	4217884	4217898	2	-1.7287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	4218034	9819392	4084	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	9819488	9854053	44	0.6116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	9854996	48911388	25995	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	48962541	49353369	26	-0.5619
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	52380456	56806416	2943	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	56806540	56806916	4	1.1327
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	56807119	60002628	2107	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	60007544	60013040	5	1.023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	60014130	68902978	5400	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	68909443	69187710	91	0.4274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	69188929	108286184	23296	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	108286246	108295968	28	0.4125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	108295982	115393149	4413	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	115394772	115403701	25	0.8122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	115403715	116984337	959	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	116984655	116986834	3	-1.3271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	116988969	162100262	27077	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	162100356	162103846	8	0.9234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	162104034	162264599	137	0.0637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	162264803	162265792	2	-1.496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	162265815	185996924	15532	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	186000287	186015744	11	-0.8034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	4	186015973	191261904	3529	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	68532	46231871	30784	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	46235191	46235192	2	-2.1808
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	46245056	177131055	80297	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	177160157	177165211	3	2.8655
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	177187571	179036656	1084	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	179036676	179037934	11	0.8652
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	5	179040803	180722926	907	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	94661	203265	103	0.044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	205376	239474	19	0.5312
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	239725	4198412	3244	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	4200744	4416634	212	-0.9294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	4423069	14978678	8131	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	14981941	15064881	52	0.4979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	15064962	29951413	9990	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	29952013	29958175	8	-1.4758
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	29958253	31388802	671	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	31394255	31404430	11	-1.5652
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	31417903	54039043	14315	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	54039110	54039814	7	1.5063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	54043307	57811879	2194	-0.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	57813861	57820951	7	-0.7883
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	57821154	66450811	2854	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	66456203	66460573	23	-1.84
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	66463848	77493251	7220	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	77496587	77509360	18	-0.6264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	77509392	79019608	982	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	79025784	79089311	109	-0.6351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	79091659	81341357	1440	-0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	81341435	81346253	29	-0.8474
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	81351060	103841522	14017	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	103844669	103868742	45	0.7853
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	6	103868754	170892930	44236	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	52911	22499674	16184	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	22502853	22503249	2	-1.7295
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	22503338	54347867	22384	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	54353999	54354004	3	1.6253
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	54354006	54354011	3	4.2115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	54360982	97223906	22153	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	97233396	97240163	14	-0.6368
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	97240224	109221034	6634	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	109224328	109225010	16	0.8361
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	109228153	109228159	7	-0.1011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	109228448	109241146	12	0.7615
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	109241218	125832792	10034	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	125832887	125834112	11	-0.7392
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	125834113	152220417	16461	0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	152220646	152220735	2	-2.3194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	7	152223955	158819765	4578	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	21254	5586172	6099	0.0305
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	5586178	5591360	19	-0.6112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	5591394	7158228	1713	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	7158507	7775845	139	0.2927
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	7781474	8423601	396	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	8423767	8423852	2	-2.365
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	8425717	12487426	3049	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	12517914	12536010	9	-1.548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	12551442	39349816	19465	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	39354760	39506122	59	-1.9368
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	39507456	40891153	1075	-0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	40897009	40897628	2	-2.0655
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	40902837	112363642	40973	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	112363822	112364436	7	-1.4943
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	112369457	142642747	21472	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	142643323	142664978	23	0.4259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	8	142665099	146268959	1439	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	36587	23353115	20446	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	23353933	23363484	7	1.1415
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	23368488	43412533	10912	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	43445848	43740182	38	0.351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	44054868	44183430	29	-0.1839
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	44184876	44386132	18	0.7183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	44409324	65356791	134	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	65356966	65412427	3	-1.8168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	66062879	97290052	19585	-0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	97290091	97290779	3	1.2661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	97293475	137279823	27565	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	137291493	137450309	117	0.5806
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	137451382	138825432	514	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	138825497	138831279	2	1.4872
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	9	138831526	140211215	527	0.0447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	62759	24415269	19243	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	24417680	24418060	11	-2.1093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	24418914	42010568	9960	-0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	42026967	42026982	2	-1.5765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	42037893	45632493	2352	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	45905767	45931287	4	0.9958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	45947683	46478979	94	-0.0705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	46478994	46479792	13	0.3532
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	46479812	47241036	267	-0.1258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	47417400	47468066	4	-1.8267
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	47480482	50901582	1665	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	51005035	51067077	2	1.6554
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	51119375	58873055	5554	0.0128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	58880511	58880541	3	-1.2194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	58880779	66976282	5566	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	66977929	66984436	27	-0.4288
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	66984452	77922857	6804	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	77927067	77927616	2	2.4331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	10	77931273	135356694	39506	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	188510	4194982	1790	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	4195630	4293105	28	-0.6134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	4303385	18894043	10930	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	18894208	18928198	72	0.3077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	18928270	25611511	5283	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	25611789	25617252	2	-3.8305
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	25619310	60722052	20017	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	60741036	60757070	2	-1.8674
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	60772382	101099594	25246	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	101103070	101103174	4	1.2376
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	101103422	104596729	2468	0.0126
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	104597600	104601723	4	-1.8774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	104602322	124276741	13514	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	124281197	124282628	3	-2.5324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	11	124293878	134449982	7780	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	20703	9508350	6198	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	9510435	9631152	41	0.3243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	9631264	12421340	2034	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	12421964	12428764	12	0.5674
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	12428780	33185927	14581	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	33192673	33198345	26	-2.7204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	33198641	118468208	53081	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	118473270	118475131	15	-0.8481
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	12	118475144	132288262	9078	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	17924949	22523808	2887	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	22524037	22531279	19	0.5458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	22531501	36969135	10657	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	36970036	36982757	16	-0.5435
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	36986330	37950811	701	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	37955572	37956056	2	1.5813
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	37963057	45929714	5472	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	45932810	45934023	2	-1.6936
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	45945213	71374989	15389	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	71375556	71378557	4	-1.9163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	71378606	94775953	15476	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	94784167	94797183	12	-0.7814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	13	94798750	114126499	13646	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	18072124	18919591	65	-0.0606
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	18922833	18979264	3	-1.5571
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	19008441	69087800	31620	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	69088121	69092220	8	-2.7989
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	69092466	105531947	23416	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	105550720	105550986	2	1.739
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	105553173	105601732	22	0.0713
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	105605189	105638145	16	0.8687
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	105640508	106223315	321	0.0542
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	106223388	106231370	7	-1.6981
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	14	106231444	106356482	89	-0.1643
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	18276341	18838175	95	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	18838318	18861835	32	-0.3918
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	18862066	74678296	34213	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	74678566	74682119	11	0.6695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	74682134	74682824	5	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	74682826	74682830	5	0.6642
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	15	74689234	100286563	17685	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	777	32390456	20143	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	32390507	32516775	29	0.444
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	32522376	33392088	111	0.0855
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	33392476	33535327	53	0.3437
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	33539331	52013243	4964	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	52015518	52027308	4	0.9493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	52027430	54354095	2026	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	54355723	54356280	3	2.9416
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	54361849	76929109	14528	-0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	76929941	76942266	17	0.8367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	16	76942502	88815036	10640	0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	17	526	49511996	28044	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	17	49513792	49514074	2	-1.652
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	17	49519611	78643088	17253	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	1543	34835501	21798	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	34842708	34845421	4	-1.1402
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	34845546	36926422	1305	-0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	36926476	36926763	4	0.9776
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	36926793	38310655	960	-0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	38310670	38311469	20	-0.5607
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	38311765	40228816	1126	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	40230884	40232623	6	-0.8604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	40236669	63101143	15959	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	63101181	63101196	2	1.417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	63101276	63112488	17	0.2721
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	63112503	66953932	2831	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	66954628	66961391	5	-0.8185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	18	66962989	76116029	6763	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	19	41910	63789666	29362	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	9305	1508999	1207	0.0277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	1509580	1545946	42	-0.9332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	1546106	15249374	10403	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	15249902	15250374	3	-1.9756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	15253258	62386512	30834	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	20	62425139	62426597	5	-2.3959
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	21	9758742	9965425	35	0.3618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	21	9975295	43792481	22596	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	21	43795301	43797240	2	-2.3146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	21	43798095	46921385	1767	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	22	14432528	41227226	17435	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	22	41229384	41307134	35	0.4711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	22	41309995	49581321	6096	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	108477	112641933	59455	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	112642404	112642982	5	-2.5627
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	112643187	114111237	797	-0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	114111874	114133387	20	0.9895
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	114134308	114139303	7	1.7997
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	114140428	114303984	101	0.8526
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	114305620	140855380	15378	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	140855722	140856309	3	-3.0296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	140856390	149958895	6239	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	149962071	149983714	34	0.8972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	X	149983728	154835548	2475	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E06_801982	Y	2710438	57427647	8590	-0.9393
