Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	1	3208470	245880329	128933	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	474222	169199006	89298	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	169203078	169203433	2	-1.7523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	169205375	196481094	14629	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	196483098	196483833	3	-1.1315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	196487298	206127263	5437	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	206130385	206135745	9	-0.8493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	206136473	242124735	21791	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	526235	24788964	13124	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	24795875	24839249	30	0.5299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	24839725	29653853	3006	-0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	29654483	29655022	2	-1.5555
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	29655099	41588351	7493	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	41590771	41610213	12	-0.9772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	41612392	199023074	82601	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	4	1043934	189836143	102617	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	967233	11180496	7254	-0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	11181478	11184114	5	-1.1685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	11188399	180293075	93140	-0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	959281	135377122	75269	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	135383947	135384931	2	-1.8559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	135391263	170745844	21104	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	671810	85411732	43751	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	85413329	85414352	2	-2.4551
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	85420822	158077879	37495	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	8	607667	145304484	81450	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	9	779932	140058573	67956	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	405240	55882676	32143	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	55884581	55962812	51	-0.9193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	55963282	135075077	48583	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	446120	119075042	67071	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119078075	119078599	2	-1.972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119080934	119827582	543	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119828424	119828609	2	-2.1548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119829119	122414836	1897	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	122414987	122414999	2	-1.4309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	122415160	133647740	7680	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	12	760163	131671419	73865	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	13	18348806	114005560	56580	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	14	19571208	105059083	49390	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	21238778	46292950	12457	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	46300634	46300655	2	-1.6954
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	46300687	48398697	1273	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	48400026	48400092	2	-1.5953
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	48402802	99701830	30746	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	593460	19237490	8395	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	19237604	19239573	13	-0.711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	19243576	48868091	7580	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	48868533	48876559	2	-1.3465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	48878156	87907437	24849	-0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	17	933971	78510305	36946	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	18	319586	75210228	42614	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	19	235018	63570038	23936	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	20	403764	61690281	37252	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	21	14269492	46503202	20557	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	22	15803930	47717016	16916	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	3167107	90907707	34980	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	90910140	90912370	2	-1.9717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	90916672	154558783	28753	6e-04
