Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	1	3218610	247813706	128987	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	484222	169490760	89288	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	169494832	169495187	2	-1.7523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	169497129	196772849	14630	0.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	196774853	196775588	3	-1.1315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	196779053	206419018	5438	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	206422140	206427500	9	-0.8493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	2	206428228	242476062	21791	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	2212571	24813960	13124	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	24820871	24864245	30	0.5299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	24864721	29678849	3004	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	29679479	29680018	2	-1.5555
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	29680095	41613347	7494	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	41615767	41635209	12	-0.9772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	3	41637388	197538677	82596	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	4	1053934	188763651	102622	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	914233	11127496	7256	-0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	11128478	11131114	5	-1.1685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	11135399	28856590	9203	-0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	28857191	28857557	2	-1.4661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	28859730	82826272	27889	-0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	82826483	82827062	6	-0.9386
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	5	82829737	180360469	56038	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	1014281	135335429	75276	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	135342254	135343238	2	-1.8559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	6	135349570	170903919	21106	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	705284	85573796	43750	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	85575393	85576416	2	-2.4551
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	7	85582886	158385118	37497	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	8	617667	145232496	81457	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	9	789932	140938752	67968	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	415240	56212670	32143	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	56214575	56292806	51	-0.9193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	10	56293276	135225087	48581	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	456120	119569832	67061	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119572865	119573389	2	-1.972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	119575724	120322372	543	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	120323214	120323399	2	-2.1548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	120323909	122909626	1897	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	122909777	122909789	2	-1.4309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	11	122909950	134142530	7680	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	12	889902	133161346	73860	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	13	19450806	114987458	56576	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	14	20501368	105988038	49388	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	23687685	48505658	12458	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	48513342	48513363	2	-1.6954
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	48513395	50611405	1273	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	50612734	50612800	2	-1.5953
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	15	50615510	101884307	30743	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	653459	19329989	8395	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	19330103	19332072	13	-0.711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	19336075	50310590	7580	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	50311032	50319058	2	-1.3465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	16	50320655	89379936	24785	-0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	17	987221	75397997	34755	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	17	75400100	75400737	2	-1.4114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	17	75401563	80917016	2189	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	18	329586	77109240	42611	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	19	284018	58878226	23936	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	20	455764	62219837	37255	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	21	15347621	47678774	20556	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	22	17423930	49331012	16915	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	3157107	91021051	34990	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	91023484	91025714	2	-1.9717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E07_801988	X	91030016	154905589	28760	6e-04
