Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	1	3208470	245880329	128981	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	2	474222	242124735	131219	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	3	526235	47439761	26742	-0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	3	47445573	47445791	2	-1.967
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	3	47488235	199023074	79576	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	1043934	176608649	96585	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	176613704	176617819	5	-0.9921
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	176622173	176936356	127	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	176937360	176937459	2	-1.2732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	176937563	183251387	3481	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	183251489	183253938	3	-1.1335
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	4	183258073	189836143	2446	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	5	967233	31240468	17905	-0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	5	31240600	31241092	2	-2.4417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	5	31242358	36823635	3341	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	5	36823852	36828385	4	-1.3787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	5	36828572	180293075	79170	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	6	959281	170745844	96407	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	7	671810	158077879	81276	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	8	607667	145304484	81482	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	9	779932	118071229	55272	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	9	118071503	118072436	2	-1.4042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	9	118073155	140058573	12692	-0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	10	405240	135075077	80811	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	11	446120	133647740	77214	-0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	12	760163	112608622	63895	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	12	112609074	112609605	2	-1.3663
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	12	112609634	131671419	9998	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	13	18348806	114005560	56596	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	14	19571208	105059083	49402	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	15	21238778	99701830	44488	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	16	593460	87907437	40846	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	17	933971	78510305	36968	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	18	319586	75210228	42626	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	19	235018	21502795	7894	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	19	21509143	21513514	2	-1.5948
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	19	21514145	63570038	16048	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	20	403764	61690281	37261	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	21	14269492	24214980	5904	-0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	21	24218041	24221560	4	-1.1657
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	21	24221629	46503202	14659	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	15803930	24609845	1947	-0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	24609964	24613975	4	-1.4163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	24613990	45255902	13049	-0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	45256053	45256701	2	-1.3642
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	45256702	47105923	1454	-0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	47106338	47109350	2	-1.5527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	22	47114972	47717016	463	-0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_E09_802104	X	3167107	154558783	63746	8e-04
