Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	51598	16022502	8416	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16026084	16026512	6	-1.8594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16026788	16760654	309	-0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16768214	16782196	4	-1.1367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16794306	16889665	55	-0.0775
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16890117	17134819	102	-0.4307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	17134834	25477053	5285	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	25477645	25484039	3	-1.3101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	25488883	72541006	28787	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	72541086	72583736	47	-0.8359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	72584492	83622946	7119	0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	83622978	83626239	2	-1.5558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	83626896	105814899	13910	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	105820728	105823898	17	0.6592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	105825578	110027165	2656	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	110027443	110038470	26	-0.4516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	110041045	112491849	1960	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	112497488	112498913	25	-1.5375
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	112507479	120832486	5107	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	120857051	121057404	77	0.5705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	121137742	150822151	2853	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	150822330	150853164	33	0.6302
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	150853200	151021254	166	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	151022932	151035324	44	0.4147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	151040529	157226199	3685	0.0208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	157228663	157229420	2	-1.5138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	157233488	159775415	1589	0.0321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	159775499	159904825	47	-0.3231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	159905104	194981496	24208	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	194994473	195082414	96	-0.4636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	195083353	221087127	17777	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	221089546	221090392	3	-2.26
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	221093340	238458363	12232	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	238460638	238460762	6	-1.7764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	238462728	246776239	5747	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	246776293	246861912	36	-0.7764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	246862475	247191011	147	0.0539
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	2784	3706436	2570	0.036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	3710421	3711148	4	-0.9342
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	3714413	34544573	21534	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	34552819	34590561	46	-0.5845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	34590667	41091739	4828	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	41091947	41099391	23	-0.5506
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	41104737	52607972	8193	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	52607984	52635046	39	-0.3762
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	52641453	86791198	21944	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	86806581	86807365	2	-2.2062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	86823917	106247145	7735	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	106247971	106251789	10	-2.3721
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	106253687	146580874	23950	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	146580899	146583404	23	0.659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	146594276	183794033	22861	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	183794642	183797969	8	-1.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	183802243	198243067	8182	0.0192
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198243811	198246916	2	-1.4
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198250946	198307470	26	-0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198307875	198308975	3	-0.9417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198314892	206023936	4591	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	206024580	206025453	2	-1.6015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	206026838	208054307	1295	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	208058179	208067581	26	0.3587
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	208067721	242738129	22135	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	35345	7677786	6790	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	7679993	7693570	19	-0.8056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	7695633	68828854	41039	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	68828949	68830103	14	-1.3438
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	68831448	89469736	12657	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	89469791	89502921	54	-0.6827
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	89503163	126918122	19536	0.0129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	126918927	126935531	8	0.6636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	126935562	142025229	9266	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	142028391	142029674	2	-2.719
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	142043308	196897393	34316	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	196903444	196941179	23	0.5056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	196941532	199380515	1192	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	2281	142806	108	-0.0647
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	145365	165546	12	0.9706
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	166521	9070328	5130	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9073635	9088304	7	-0.6856
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9088443	9469074	167	-0.0371
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9473325	9474140	2	1.3451
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9476600	9832514	379	0.0302
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9832726	9840596	27	-1.6666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9843312	34455399	16986	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	34455420	34506399	46	0.3339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	34508213	43058348	5683	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	43058630	43069391	6	-0.8919
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	43070047	69027207	13796	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	69043083	69512426	83	0.3706
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	69571393	78012236	4996	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	78012264	78012802	6	-0.8389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	78012853	90647193	7964	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	90647222	90647517	3	-1.1022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	90648815	161260754	42175	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	161272224	161290239	40	-0.9142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	161303320	172605921	7283	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172611459	172614019	8	2.4107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172614033	173224503	401	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	173225723	173226108	12	-1.4759
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	173232554	189458252	10937	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	189458354	189458433	4	1.2568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	189459807	190426037	787	-0.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	190432112	190436258	4	-2.2347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	190436765	191261904	385	-0.0465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	68532	9951962	8030	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	9954952	9979411	33	-0.9264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	9979687	86147512	44823	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	86151134	86154902	3	-1.379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	86157385	104600526	10434	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	104604058	104665902	48	-0.9359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	104667691	140197978	22644	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	140198514	140212023	12	-0.765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	140221211	151494293	7541	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	151494364	151498544	15	-0.6197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	151500464	155409498	2664	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155409576	155415307	12	-0.6034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155427828	178040428	15276	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	178042581	178045769	3	-2.8524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	178051461	178994069	599	0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	178994281	179037758	44	0.2947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	179037873	179037934	2	1.926
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	179040803	180722926	907	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	94661	26845417	20282	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	26845436	26871060	18	0.473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	26871409	29945167	1444	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	29945293	29958359	18	-0.9179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	29979615	32562501	1190	0.0422
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32564661	32681749	31	0.9095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32681992	32713554	23	0.3891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32713862	49032901	10427	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	49036830	49057133	12	-0.5228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	49057809	67270342	8977	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	67270551	67271168	2	-1.6823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	67277643	79019608	7639	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	79025784	79089311	108	-0.7316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	79091659	94709128	10014	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	94709261	94714285	2	-1.3465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	94716253	95236633	357	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	95237218	95238236	5	-1.0808
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	95244573	103841522	5104	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	103844669	103872163	47	0.6419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	103872363	157699483	34788	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	157701252	157716064	3	1.2309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	157716982	170824459	9434	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	170892304	170892930	2	-1.644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	52911	6797223	3439	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	6797461	7018762	75	-0.2632
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	7019247	54334250	35045	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	54334297	54354011	11	-0.7099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	54360982	57011783	1632	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	57069302	57088074	4	1.7722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	57120410	97233396	20515	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	97233398	97240411	15	-0.6143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	97242176	110852528	7756	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	110852730	110853895	5	-1.0542
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	110856650	142156294	19384	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	142156339	142165684	27	0.67
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	142165914	143542557	845	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	143548534	143681866	36	-0.3812
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	143682164	156084551	8066	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	156085929	156086940	3	-2.8958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	156087669	158819765	1632	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	21254	2068619	1489	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2068658	2068760	2	-2.325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2068779	2861760	810	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2877299	2883931	4	-1.147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2884680	3893617	1339	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	3895215	3895858	5	-1.332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	3897504	7225429	4210	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	7237790	7847301	150	0.4459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	7847316	18309434	8734	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	18310437	18315465	4	-1.8635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	18315667	25030439	5095	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	25030494	25040167	23	0.5558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	25047021	39349816	9029	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	39354760	39506122	59	-2.076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	39507456	112363822	42052	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	112363846	112364436	6	-1.5369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	112369457	146268959	22937	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	36587	44191224	31439	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	44195483	44936301	67	0.3533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	44936428	67673801	140	-0.2885
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	67675871	67678367	8	1.0854
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	67699736	70177641	220	-0.2453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	70179791	118734089	34987	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	118736905	118799948	76	-0.7923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	118801556	140211215	12966	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	62759	13090011	10939	0.0221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	13090029	13090176	4	-0.9677
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	13090434	17978214	3940	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	17989863	18011822	2	-1.319
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	18069831	24415269	4357	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	24417680	24418914	12	0.6842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	24418957	31286516	5045	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	31291340	31291732	9	-0.7826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	31291744	45632493	7260	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	45905767	45931287	4	1.6151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	45947683	46397572	38	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	46397589	46790374	140	0.2548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	46812338	124334099	51408	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	124334213	124336904	3	-4.5077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	124336968	135356694	7920	0.0229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	188510	55119916	34660	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	55130608	55232215	74	0.2927
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	55232377	79645161	13285	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	79645196	79645212	2	-2.8599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	79645334	134449982	39130	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	20703	9525137	6207	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	9529176	9619559	23	-1.2163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	9626236	10432319	607	0.0537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10432562	10436864	5	-0.634
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10437150	10471727	23	-0.0396
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10474634	10478587	3	-2.4002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10479792	11403759	552	-0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	11403798	11432296	27	0.5067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	11434653	30126848	13128	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	30130534	30135200	26	-0.639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	30135217	31156324	874	0.0274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	31160565	31298390	92	0.4543
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	31301146	33192693	1303	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	33192787	33198641	25	-0.7369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	33199627	36273993	845	-0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	36298834	36300285	2	-1.9453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	36320625	57003681	11992	0.0187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	57003705	57017115	10	-0.5698
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	57017164	97500135	26036	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	97501327	97509215	9	-0.9054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	97509290	98319868	486	0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	98319904	98322851	26	-0.6934
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	98322865	113571654	9963	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	113572595	113574792	2	-1.4669
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	113574916	132288262	12796	0.0252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	17924949	36969135	13564	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	36970036	36982543	14	0.5346
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	36982732	48429552	8040	0.0224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	48431716	48434505	2	-2.2072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	48435706	63227094	8400	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	63242470	63286272	39	0.5321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	63290222	71374989	5093	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	71375556	71378557	4	-1.6476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	71378606	114126499	29139	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	18072124	18690051	46	0.0352
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	18730853	18763249	4	-1.3095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	18767885	73070876	34268	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	73076460	73090732	8	-1.5787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	73099653	78226793	3374	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	78230938	78235120	3	-2.9088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	78235361	105531947	17406	0.0224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	105550720	105553341	4	-1.1343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	105558085	106356482	453	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	18276341	18463975	47	-0.0385
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	18466953	20232440	376	0.3017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	20232614	20817792	304	0.0259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	20828889	20842241	4	-0.9616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	20848041	24985415	2656	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	24987503	24992464	15	-0.7134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	24992548	26118363	778	0.0227
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	26118742	26122248	2	-1.4997
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	26132425	28157323	912	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	28173703	28609050	109	-0.3809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	28675248	50049903	13250	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	50053027	50062547	6	-1.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	50062836	74678296	15880	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	74678566	74682829	20	0.574
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	74682830	80478557	3655	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	80482757	80905894	13	-0.5569
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	80966604	100286563	14017	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	777	19851864	13533	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	19853151	19874863	29	-0.6667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	19877755	22349521	1294	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	22465433	22618243	72	-0.4265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	22620480	54354011	12400	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	54354076	54379898	19	-0.6725
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	54379945	54430910	20	0.4873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	54431487	88815036	25149	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	526	35102129	20065	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	35104236	35104548	4	-1.165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	35104566	41553381	3460	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	41553424	42149939	162	-0.2884
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	42150374	78643088	21609	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	18	1543	76116029	50801	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	41910	48389173	20772	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	48394873	48448077	22	-0.7586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	48458499	55330387	3328	0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	55340381	55352337	3	-1.6426
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	55353260	60969862	3382	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	60973882	60974879	5	-1.0482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	60978105	63789666	1849	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	9305	1508999	1207	0.0347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	1509580	1541893	41	-1.066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	1545946	40676650	25626	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	40676913	40702856	50	-0.7765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	40703655	53923413	9670	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	53925050	53937608	19	-0.9888
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	53938003	62426597	5887	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	21	9758742	46921385	24403	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	14432528	22660218	4617	0.0246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	22660269	22662625	3	-2.2167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	22662933	22674422	4	-0.2875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	22680529	22732442	22	0.6441
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	22732461	39123206	11588	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	39124536	39124766	2	-3.4937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	39127618	41248296	1208	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	41248655	41280435	14	0.6256
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	41285375	49581321	6107	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	108477	76270041	40130	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	76278683	76295047	2	-2.243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	76295049	134581585	31938	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	134585148	134627984	30	0.5389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	134629972	141757951	4478	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	141758549	141760641	3	-1.1551
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	141760742	146166243	3058	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	146168690	146169979	3	-1.0275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	146170047	154835548	4952	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	2710438	3045595	151	-2.8242
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	3065268	5999989	620	-2.4857
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	6003672	14099670	2768	-2.9275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	14099736	14103917	3	-7.6945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	14104283	17543786	1822	-2.9718
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	17547696	17679836	58	-3.3524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	17688729	17688934	3	-7.6439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	17691665	19547685	899	-3.3847
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	19547873	22957565	1263	-2.9722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	22969615	24599413	295	-3.4833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	24602438	25008090	93	-2.7901
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	25014206	25846090	90	-3.8525
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	25854303	26129939	91	-2.7079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	26130472	26833326	251	-3.5339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	26847504	57427647	183	-2.6847
