Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	61735	16149915	8416	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16153497	16153925	6	-1.8594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16154201	16888067	309	-0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16895627	16909609	4	-1.1367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	16921719	17017078	55	-0.0775
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	17017530	17262232	102	-0.4307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	17262247	25604466	5283	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	25605058	25611452	3	-1.3101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	25616296	72768418	28865	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	72768498	72811148	47	-0.8359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	72811904	83850358	7114	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	83850390	83853651	2	-1.5558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	83854308	106013376	13906	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	106019205	106022375	17	0.6592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	106024055	110225642	2656	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	110225920	110236947	26	-0.4516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	110239522	112690326	1960	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	112695965	112697390	25	-1.5375
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	112705956	121130963	5105	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	121155528	121355881	77	0.5705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	121436219	152555527	2852	0.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	152555706	152586540	33	0.6302
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	152586576	152754630	166	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	152756308	152768700	44	0.4147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	152773905	158959575	3684	0.0208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	158962039	158962796	2	-1.5138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	158966864	161508791	1590	0.0321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	161508875	161638201	47	-0.3231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	161638480	196714873	24207	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	196727850	196815791	96	-0.4636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	196816730	223020504	17778	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	223022923	223023769	3	-2.26
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	223026717	240391740	12230	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	240394015	240394139	6	-1.7764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	240396105	248709616	5745	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	248709670	248795289	36	-0.7764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	248795852	249224388	148	0.0549
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	12784	3728561	2570	0.036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	3732546	3733273	4	-0.9342
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	3736538	34691069	21532	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	34699315	34737057	46	-0.5845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	34737163	41238235	4828	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	41238443	41245887	23	-0.5506
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	41251233	52754468	8192	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	52754480	52781542	39	-0.3762
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	52787949	86937687	21939	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	86953070	86953854	2	-2.2062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	86970406	106880713	7732	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	106881539	106885357	10	-2.3721
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	106887255	146864404	23946	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	146864429	146866934	23	0.659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	146877806	184085788	22862	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	184086397	184089724	8	-1.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	184093998	198534822	8183	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198535566	198538671	2	-1.4
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198542701	198599225	26	-0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198599630	198600730	3	-0.9417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	198606647	206315691	4592	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	206316335	206317208	2	-1.6015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	206318593	208346062	1295	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	208349934	208359336	26	0.3587
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	208359476	243089456	22135	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	60345	7702786	6790	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	7704993	7718570	19	-0.8056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	7720633	68746164	41039	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	68746259	68747413	14	-1.3438
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	68748758	89387046	12652	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	89387101	89420231	54	-0.6827
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	89420473	125435432	19535	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	125436237	125452841	8	0.6636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	125452872	140542539	9266	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	140545701	140546984	2	-2.719
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	140560618	195412212	34316	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	195418263	195455508	23	0.5056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	195455861	197896118	1192	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	12281	152806	108	-0.0647
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	155365	175546	12	0.9706
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	176521	9461230	5130	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9464537	9479206	7	-0.6856
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9479345	9859976	167	-0.0371
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9864227	9865042	2	1.3451
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	9867502	10223416	379	0.0302
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	10223628	10231498	27	-1.6666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	10234214	34779004	16986	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	34779025	34830004	46	0.3339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	34831818	43363591	5682	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	43363873	43374634	6	-0.8919
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	43375290	69344612	13799	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	69360488	69540025	77	0.3776
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	69551744	77793212	4999	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	77793240	77793778	6	-0.8389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	77793829	90428170	7965	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	90428199	90428494	3	-1.1022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	90429792	161041304	42181	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	161052774	161070789	40	-0.9142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	161083870	172369346	7284	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172374884	172377444	8	2.4107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172377458	172987928	401	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172989148	172989533	12	-1.4759
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	172995979	189221258	10937	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	189221360	189221439	4	1.2568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	189222813	190189043	786	-0.0106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	190195118	190199264	4	-2.2347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	190199771	191027923	385	-0.0465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	15532	9898962	8032	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	9901952	9926411	33	-0.9264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	9926687	86111756	44821	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	86115378	86119146	3	-1.379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	86121629	104572627	10434	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	104576159	104638003	48	-0.9359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	104639792	140217794	22643	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	140218330	140231839	12	-0.765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	140241027	151514100	7543	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	151514171	151518351	15	-0.6197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	151520271	155301552	2507	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155301922	155305036	3	-0.8792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155305278	155476920	152	0.0401
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155476998	155482729	12	-0.6034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	155495250	178107822	15278	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	178109975	178113163	3	-2.8524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	178118855	179061463	599	0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	179061675	179105152	44	0.2947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	179105267	179105328	2	1.926
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	179108197	180790320	907	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	149661	26737438	20281	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	26737457	26763081	18	0.473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	26763430	29837188	1444	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	29837314	29850380	18	-0.9179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	29871636	32454523	1190	0.0422
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32456683	32573771	31	0.9095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32574014	32605576	23	0.3891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	32605884	48924942	10426	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	48928871	48949174	12	-0.5228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	48949850	67213621	8980	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	67213830	67214447	2	-1.6823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	67220922	78962889	7638	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	78969065	79032592	108	-0.7316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	79034940	94652407	10013	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	94652540	94657564	2	-1.3465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	94659532	95179912	357	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	95180497	95181515	5	-1.0808
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	95187852	103734829	5104	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	103737976	103765470	47	0.6419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	103765670	157779495	34795	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	157781264	157796076	3	1.2309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	157796994	170982534	9434	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	171050379	171051005	2	-1.644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	43355	6830698	3437	0.0208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	6830936	7052237	75	-0.2632
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	7052722	54366756	35043	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	54366803	54386517	11	-0.7099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	54393488	57007841	1631	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	57065360	57084132	4	1.7722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	57116468	97395460	20521	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	97395462	97402475	15	-0.6143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	97404240	111065292	7757	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	111065494	111066659	5	-1.0542
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	111069414	142476719	19386	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	142476764	142502656	43	0.5346
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	142502776	143911624	827	0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	143917601	144050933	36	-0.3812
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	144051231	156391790	8067	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	156393168	156394179	3	-2.8958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	156394908	159127004	1632	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	31254	2081212	1490	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2081251	2081353	2	-2.325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2081372	2874353	810	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2889892	2896524	4	-1.147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	2897273	3906209	1339	0.0183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	3907807	3908450	5	-1.332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	3910096	7238019	4210	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	7250380	7809891	150	0.4459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	7809906	18265154	8733	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	18266157	18271185	4	-1.8635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	18271387	24974522	5095	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	24974577	24984250	23	0.5558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	24991104	39230659	9030	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	39235603	39386965	59	-2.076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	39388299	112294646	42056	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	112294670	112295260	6	-1.5369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	112300281	146298155	22939	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	46587	44251228	31447	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	44255487	44996305	67	0.3533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	44996432	68183981	141	-0.285
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	68186051	68188547	8	1.0854
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	68209916	70987821	220	-0.2453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	70989971	119694268	34992	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	119697084	119760127	76	-0.7923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	119761735	141091394	12967	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	72759	24375263	19241	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	24377674	24378908	12	0.6842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	24378951	31246510	5045	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	31251334	31251726	9	-0.7826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	31251738	46312487	7260	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	46485761	46511281	4	1.6151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	46527677	46977566	38	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	46977583	47370368	140	0.2548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	47392332	124344109	51406	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	124344223	124346914	3	-4.5077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	124346978	135506704	7920	0.0229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	198510	55363340	34656	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	55374032	55475639	74	0.2927
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	55475801	79967513	13286	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	79967548	79967564	2	-2.8599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	79967686	134944770	39122	0.0156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	150442	9633870	6206	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	9637909	9728292	24	-1.1509
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	9734969	10541052	607	0.0537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10541295	10545597	5	-0.634
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10545883	10580460	23	-0.0396
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10583367	10587320	3	-2.4002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	10588525	11512492	551	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	11512531	11541029	27	0.5067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	11543386	30235581	13126	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	30239267	30243933	26	-0.639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	30243950	31265057	874	0.0274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	31269298	31407123	91	0.4554
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	31409879	33301426	1303	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	33301520	33307374	25	-0.7369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	33308360	37987726	845	-0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	38012567	38014018	2	-1.9453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	38034358	58717414	11990	0.0187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	58717438	58730848	10	-0.5698
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	58730897	98976004	26036	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	98977196	98985084	9	-0.9054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	98985159	99795737	486	0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	99795773	99798720	26	-0.6934
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	99798734	115087271	9962	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	115088212	115090409	2	-1.4669
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	115090533	133778189	12795	0.0252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	19026949	38071135	13562	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	38072036	38084543	14	0.5346
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	38084732	49531551	8040	0.0225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	49533715	49536504	2	-2.2072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	49537705	64329093	8399	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	64344469	64388271	39	0.5321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	64392221	72476988	5093	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	72477555	72480556	4	-1.6476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	72480605	115108397	29138	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	19002124	19620051	46	0.0352
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	19660853	19693249	4	-1.3095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	19697885	74001123	34264	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	74006707	74020979	8	-1.5787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	74029900	79157040	3374	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	79161185	79165367	3	-2.9088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	79165608	106460902	17407	0.0224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	106479675	106482296	4	-1.1343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	106487040	107285437	453	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	20016328	20203961	47	-0.0385
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	20206939	22681076	376	0.3017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	22681250	23266351	304	0.0259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	23277448	23290800	4	-0.9616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	23296600	27402669	2657	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	27404757	27409718	15	-0.7134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	27409802	28444768	778	0.0227
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	28445147	28448653	2	-1.4997
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	28458830	30370031	912	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	30386411	30821758	109	-0.3809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	30887956	52262611	13249	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	52265735	52275255	6	-1.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	52275544	76891241	15878	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	76891511	76895774	20	0.574
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	76895775	82691502	3655	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	82695702	83108839	13	-0.5569
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	83169549	102469040	14016	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	60777	19944363	13532	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	19945650	19967362	29	-0.6667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	19970254	22442020	1294	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	22557932	22710742	72	-0.4265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	22712979	55796510	12399	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	55796575	55822397	19	-0.6725
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	55822444	55873409	20	0.4873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	55873986	90287535	25072	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	526	37848603	20064	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	37850710	37851022	4	-1.165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	37851040	44197603	3460	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	44197646	44794755	162	-0.2884
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	44795190	81049726	21610	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	18	11543	78015057	50798	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	90910	43697333	20771	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	43703033	43756237	22	-0.7586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	43766659	50638575	3328	0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	50648569	50660525	3	-1.6426
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	50661448	56278050	3382	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	56282070	56283067	5	-1.0482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	56286293	59097854	1849	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	61305	1560999	1207	0.0347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	1561580	1593893	41	-1.066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	1597946	41243236	25629	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	41243499	41269442	50	-0.7765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	41270241	54490006	9670	0.0179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	54491643	54504201	19	-0.9888
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	54504596	62956153	5887	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	21	10736871	48096957	24402	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	16052528	24330218	4617	0.0246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	24330269	24332625	3	-2.2167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	24332933	24344422	4	-0.2875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	24350529	24402442	22	0.6441
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	24402461	40793260	11587	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	40794590	40794820	2	-3.4937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	40797672	42918352	1208	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	42918711	42950491	14	0.6256
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	42955431	51234455	6108	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	168477	76353650	40140	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	76362292	76378656	2	-2.243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	76378658	134753919	31919	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	134757482	134800318	30	0.5389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	134802306	141930285	4475	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	141930883	141932975	3	-1.1551
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	141933076	146358551	3058	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	146360998	146362287	3	-1.0275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	146362355	155182354	4951	0.0209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	2650438	5944602	805	-2.4795
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	5944603	15590276	2774	-2.9209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	15590342	15594523	3	-7.6945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	15594889	19170442	1884	-2.9785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	19179335	19179540	3	-7.6439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	19182271	19515512	171	-3
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	19516159	21088297	728	-3.4751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	21088485	24515802	1245	-2.9675
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	24516081	26190025	314	-3.4648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	26193050	26598702	93	-2.7901
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	26604818	27436702	90	-3.8525
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	27444915	27720551	91	-2.7079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	27721084	28423938	251	-3.5339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	Y	28438116	59018259	183	-2.6847
