Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	1	3218610	247813706	129046	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	2	484222	242476062	131212	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	3	2212571	197538677	106312	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	4	1053934	188763651	102655	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	5	914233	180360469	100428	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	6	1014281	170903919	96413	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	705284	34877996	19298	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	34879068	34884439	3	-1.1498
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	7	34886558	158385118	61971	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	8	617667	145232496	81491	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	789932	119693164	55825	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	119699842	119757696	66	-0.7829
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	9	119762707	140938752	12100	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	10	415240	135225087	80817	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	11	456120	134142530	77211	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	12	889902	133161346	73890	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	13	19450806	114987458	56598	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	14	20501368	105988038	49402	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	15	23687685	101884307	44492	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	16	653459	89379936	40788	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	17	987221	80917016	36971	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	18	329586	61404146	34869	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	18	61404307	61404464	2	-1.3699
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	18	61404610	77109240	7755	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	284018	50638575	20484	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	50648569	50660525	3	-1.6581
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	19	50661448	58878226	3459	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	20	455764	62219837	37275	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	21	15347621	25585384	6186	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	21	25588249	25588339	3	-1.141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	21	25588956	47678774	14380	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	22	17423930	49331012	16920	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	3157107	81981881	31331	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	81983052	81985379	2	-1.4531
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F01_801962	X	81988573	154905589	32429	0.0011
