Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	51598	25465715	14164	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	25468468	25534592	29	0.5737
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	25534799	34864181	4968	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	34864225	34886855	23	-0.4843
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	34888129	38905018	2197	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	38905019	38905049	3	1.2861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	38907775	40793623	988	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	40794663	40800797	3	-5.6836
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	40801513	61886594	13285	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	61887539	61890775	2	-2.9829
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	61892397	72541504	7298	0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	72541524	72581960	39	1.0993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	72582019	103960907	20088	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	103965022	104104926	28	0.452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	104105024	105820728	920	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	105820759	105823867	14	0.75
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	105823883	108531282	1944	-0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108535758	108536400	2	-3.5389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108539019	108567878	19	-0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108570825	108618702	2	-3.0612
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108630480	108712268	53	-0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108729983	108787720	11	-0.8239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	108815431	110029038	640	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	110034497	110041701	17	1.0595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	110044476	112491849	1957	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	112497488	112498736	22	0.5772
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	112498764	147177801	6370	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	147182684	147788470	175	-0.6288
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	147811996	147884075	6	0.7877
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	147884112	147943765	8	0.0991
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	147957888	147999249	13	-0.5193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	147999353	150822151	1465	0.0245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	150822330	150853200	34	0.6701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	150853218	151028670	177	0.0305
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	151028881	151035324	32	0.4046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	151040529	157133197	3622	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	157135125	157136383	2	3.1984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	157141442	167483561	7710	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	167500598	167508390	7	-1.9659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	167509025	246804070	54047	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	246815817	246861912	30	-0.6837
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	1	246862475	247191011	147	0.13
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	2784	4191739	2988	0.026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	4192075	4200414	32	-0.5418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	4200524	34544573	21085	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	34552819	34590667	47	-0.4156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	34591060	52608385	13048	0.0123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	52612257	52635046	33	0.75
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	52641453	146578555	53634	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	146580874	146583404	24	-1.7736
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	146594276	232945770	52883	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	232945871	232950500	16	0.5431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	2	232950587	242738129	6233	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	35345	1231380	1002	0.035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	1231760	1231766	2	-3.8594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	1231852	6621543	4839	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	6626128	6628332	23	-0.5728
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	6630078	68828854	41979	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	68828949	68830103	14	-1.3468
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	68831448	72720464	2980	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	72721919	72722022	2	-2.159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	72724106	84782448	6957	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	84782483	84785290	18	-0.5486
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	84788974	100420474	5991	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	100427148	100432111	38	-0.5681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	100433654	129862942	18100	-0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	129863939	129895021	16	0.6133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	129896851	142025229	7415	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	142028391	142029674	2	-2.6314
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	142043308	150445637	5172	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	150445653	150449433	25	-0.6352
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	150449603	158159278	4756	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	158161161	158166246	6	-0.9617
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	158174102	164197211	3724	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	164200421	164202256	2	-3.2568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	164208853	196767187	20620	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	196868323	196941719	36	-0.6274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	3	196942560	199380515	1185	0.0338
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	2281	64508	67	-0.3145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	64983	4217419	1650	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	4217884	4217898	2	-1.6758
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	4218034	9066075	3531	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	9070328	9074070	3	1.5418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	9079832	9819488	550	0.0404
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	9832514	9844366	35	0.616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	9845240	115393149	64310	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	115394772	115401624	23	-1.119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	115403678	122501423	4347	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	122501918	122504585	28	-0.6027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	122510581	172605921	30342	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	172611459	172614299	11	2.7713
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	4	172614351	191261904	12529	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	68532	46307687	30801	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	46308278	46309259	5	-2.2347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	46313969	73338379	14117	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	73338778	73343739	2	-2.7366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	73345118	175392693	65414	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	175398295	175402113	2	-2.5693
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	175402930	177131055	729	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	177160157	177165211	3	2.7314
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	177187571	180307129	1813	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	180311316	180350709	19	-1.8979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	5	180365831	180722926	171	0.0412
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	94661	212693	109	-0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	216773	239837	15	-0.7619
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	247306	9150481	7282	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	9157368	9189309	3	-1.4264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	9282778	32539270	15531	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	32539530	32713554	62	0.7558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	32713862	32794174	46	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	32796593	32798923	12	0.7871
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	32800205	81341357	28544	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	81341435	81351060	30	-0.8807
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	81351118	103841522	14014	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	103844669	103872163	47	0.5843
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	6	103872363	170892930	44226	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	52911	38285864	27438	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	38285903	38311012	65	0.3361
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	38315337	54347867	11060	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	54353999	54354011	6	-1.2655
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	54360982	97223906	22152	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	97233396	97242213	18	-0.7023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	97242264	109224337	6638	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	109224905	109228448	16	-0.7176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	109228480	109241146	11	-1.8574
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	109241218	125832792	10030	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	125832887	125834112	11	1.869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	7	125834113	158819765	21038	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	21254	1350210	889	0.0365
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	1350253	1350269	2	-2.1552
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	1350621	1354475	11	0.193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	1354769	1355423	6	-1.0989
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	1357043	14553939	12461	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	14554403	14554445	3	-1.803
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	14554767	14785761	241	-0.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	14787572	14794117	4	-1.0828
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	14794842	40301274	17924	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	40302954	40313586	36	-0.7085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	40313613	51193325	3970	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	51194564	51195976	9	-1.5187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	51201131	112363822	37448	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	112363846	112364436	6	-2.2934
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	8	112369457	146268959	22930	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	9	36587	137353926	78781	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	9	137355443	137356233	2	-3.196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	9	137357618	140211215	1115	0.0291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	10	62759	17934982	14881	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	10	17967560	18176754	13	0.8106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	10	18190767	66977942	29842	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	10	66977957	66992932	28	-0.6147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	10	66995459	135356694	46304	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	188510	5740258	3302	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	5740499	5764952	32	-0.7263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	5765624	55119916	31324	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	55130608	55200787	49	0.3849
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	55201444	89399078	19961	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	89416494	89449986	5	-1.617
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	11	89457958	134449982	32465	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	20703	9521823	6206	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	9525137	9626237	26	1.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	9626953	11111991	1041	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	11112094	11148096	13	-1.3374
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	11151542	11395358	130	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	11402844	11444635	39	-0.6781
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	11445145	33185927	15410	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	33192673	33194877	18	-0.8284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	33194921	41706224	4173	0.0254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	41706796	41707020	2	-1.9315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	41713575	98319868	35212	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	98319904	98322486	23	-0.6581
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	98322657	128566539	20386	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	128569443	128569547	2	-1.7831
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	12	128569723	132288262	2376	0.0513
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	17924949	18995944	547	-0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	18998527	18998787	2	2.1509
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	18999517	48429552	21064	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	48431716	48434505	2	-2.8296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	48435706	71374989	13531	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	71375556	71378557	4	-2.5083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	71378606	90899030	12668	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	90899207	90905857	2	-1.6992
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	90906268	97325275	4287	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	97328125	97331831	7	-0.995
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	13	97336300	114126499	12172	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	18072124	18627041	40	-0.0617
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	18632139	19494766	150	-0.4158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	19495349	39678679	12914	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	39683673	39686670	2	-1.9766
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	39687916	73070876	21206	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	73076460	73099653	9	-1.5382
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	73099668	97210100	16198	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	97216554	97216558	2	-2.1641
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	97216658	105943107	4760	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	105945406	105989139	51	-0.5009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	14	105989153	106356482	225	-0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	15	18276341	28307034	5124	0.0298
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	15	28310380	28377089	22	-0.5805
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	15	28377346	100286563	46896	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	777	22465433	14855	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	22465812	22612021	70	-0.4857
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	22618243	32000264	5161	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	32000335	32496123	78	-0.3424
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	32496402	32496407	4	-4.5428
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	32496410	33766577	203	-0.2756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	33770364	52015518	4929	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	52026888	52027308	3	1.5186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	52027430	54354095	2026	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	54355723	54356280	3	3.6434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	16	54361849	88815036	25183	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	17	526	16678885	10518	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	17	16680995	16682253	3	-1.7042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	17	16682509	41860676	13118	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	17	41879021	41879036	2	1.9745
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	17	41901645	78643088	21648	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	18	1543	36514478	22835	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	18	36514488	36519387	14	-0.9018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	18	36522022	61918120	17564	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	18	61918268	61918902	2	-2.4899
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	18	61926575	76116029	10381	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	41910	5782107	1735	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	5784037	5817073	18	-0.8601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	5821281	21606759	7928	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	21607480	21611709	2	2.0651
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	21611951	41255589	7507	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	41256598	41259934	2	-1.6222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	41260638	47955346	3375	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	47956190	48054492	38	0.4667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	19	48060775	63789666	8749	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	20	9305	1508999	1207	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	20	1509580	1541893	41	-1.0388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	20	1545946	26253579	18813	1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	20	28034013	28222941	51	-0.4056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	20	28225968	62426597	22383	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	21	9758742	18977958	3709	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	21	18979549	19000295	24	0.4431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	21	19000371	46921385	20666	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	22	14432528	20170595	2892	0.0392
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	22	20170674	20170690	2	-2.0947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	22	20170765	22674422	1728	0.0404
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	22	22680529	22726814	19	-1.5296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	22	22731529	49581321	18918	0.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	108477	8206179	4298	-0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	8212375	8354253	140	0.8785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	8361401	20660859	8010	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	20666661	20667813	2	-2.789
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	20667988	24427899	2515	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	24428204	24428506	2	-4.7688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	24428606	47551573	14002	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	47552501	47552584	2	-2.4721
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	47552619	48039358	283	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	48039688	48051248	6	-2.1332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	48053681	123423327	36603	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	123423687	123423700	2	-3.7856
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	X	123425218	154835548	18585	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	Y	2710438	20721953	6793	-0.9222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	Y	20725977	20924356	9	-1.9185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F02_801932	Y	20925094	57427647	1787	-0.9268
