Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	51598	12762163	6524	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	12764515	12906093	42	0.6025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	13081670	13248351	9	-0.0341
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	13248555	13257060	11	0.7294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	13257219	14933790	1053	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	14935213	14940161	4	-0.8502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	14940787	16021930	768	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	16022502	16026512	7	0.8924
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	16026788	16884097	352	0.0323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	16884147	17117800	83	-0.3366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17118117	17126125	12	-1.0492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17129904	17155012	27	-0.3489
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17155662	72541086	34063	0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	72541504	72583721	45	-0.867
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	72583736	104023054	20081	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	104023154	104041509	12	-0.7178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	104058403	110029023	3613	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	110029038	110041701	18	-0.59
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	110044476	111177743	840	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	111178891	111189749	39	-0.7402
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	111193590	147137024	7464	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	147137561	147572692	157	-0.5388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	147603260	150822151	1517	0.0238
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	150822330	150853164	33	-1.5699
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	150853200	151028547	174	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	151028563	151029514	14	-0.4463
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	151029527	156055882	2782	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	156058926	156064599	2	-1.5893
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	156064624	159775499	2515	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	159780383	159787194	3	-1.3474
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	159789759	166031459	4938	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	166032807	166033543	4	-0.9996
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	166035137	191150759	16687	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	191154616	191154968	2	-1.506
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	191155789	191411270	186	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	191414359	191414974	4	-1.194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	191415154	194960074	2403	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	194963360	195068065	107	0.3104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	195068278	208137685	8828	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	208148236	208148688	2	-1.6891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	208150607	247191011	27120	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	2784	4178544	2984	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	4181062	4200578	38	0.3366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	4201042	34544573	21077	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	34552819	34590561	46	-0.4782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	34590667	35829477	878	0.0328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	35831294	35841420	6	-1.4595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	35841451	49386546	9873	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	49389272	49394694	5	-1.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	49398545	52607972	2280	0.0394
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	52607984	52635046	39	0.8399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	52641453	76435835	15362	0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	76437531	76440219	5	-0.9369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	76445352	87542730	6792	0.0236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	87544412	87548308	4	-1.4053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	87556284	89573808	727	0.0361
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	89597067	89612925	4	1.0436
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	89632342	106240438	6776	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106240929	106249661	8	-0.8292
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106249763	106253687	8	-2.4454
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106253840	126158693	11501	0.0249
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	126168121	126168383	2	-2.2366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	126168402	164327071	23047	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	164328172	164354888	14	-0.5689
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	164356908	208063157	26374	0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	208063200	208067581	17	-0.6401
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	208067721	242738129	22133	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	35345	1042555	844	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	1042598	1042758	2	-1.7271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	1046362	6626211	4997	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	6626237	6630371	24	0.4156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	6630415	26586653	14189	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26586671	26586889	4	-2.4459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26586902	26588205	8	0.0792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26589978	26589988	7	-1.1639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26589989	47374915	13440	0.0126
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	47375335	47380455	3	-1.3431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	47384216	62036436	9170	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	62037660	62038764	2	-1.4399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	62039557	64729072	2232	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	64729609	64730377	2	-1.4098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	64730477	68828949	2917	0.0234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	68828974	68830103	13	-1.4316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	68831448	100419317	15947	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	100419653	100432111	40	0.3175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	100433654	131245549	18734	0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	131246388	131289614	53	-0.2336
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	131289688	159832812	17669	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	159833578	159834239	2	-2.6821
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	159841566	163995433	2610	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	163995786	164109266	69	0.6477
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	164109297	176428606	7519	0.0277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	176428621	176429065	4	1.2563
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	176429149	196757361	13161	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	196760499	196932413	30	0.3805
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	196932500	199380515	1193	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	2281	4154245	1703	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	4161131	4203661	10	-1.0409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	4210964	9819488	4087	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	9832514	9856610	46	0.4727
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	9857272	10001452	161	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10002252	10009609	14	-0.5108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10009766	48962605	25817	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	48985949	48986112	2	-2.3132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	48991977	64388380	7620	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	64390176	64390724	5	0.9998
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	64390803	68900747	2854	0.0257
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	68902978	68970737	13	-0.477
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	68977394	69054598	12	0.1252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	69057536	69477123	78	0.4782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	69485755	172293420	62231	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172297338	172312520	11	-0.8191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172316617	172605921	223	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172611459	172614033	9	1.9468
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172614285	190432112	12135	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	190432616	190436765	4	-2.3383
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	190448265	191261904	384	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	68532	2790525	1722	-0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	2790700	2791455	2	-1.6705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	2807522	12872313	8490	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	12872375	12879650	8	-1.4085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	12886857	17398088	3072	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	17400706	17411269	7	-0.8716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	17412196	57357403	22574	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	57361784	57369272	31	1.8962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	57369290	180722926	77157	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	94661	198861	99	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	199267	327897	105	-0.4693
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	329109	23165616	17530	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	23168970	23168978	3	-1.45
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	23172233	28129248	3167	0.0253
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	28129568	28129612	2	-1.6751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	28131730	29945051	831	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	29945166	29979615	21	0.4833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	29982621	32794174	1288	-0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32796593	32798775	9	0.7489
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32798790	32798808	2	2.7993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32798923	34045977	764	-0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	34046721	34050683	7	-1.0744
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	34052564	40472303	4158	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	40473579	40477271	6	-1.0308
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	40478477	53202820	8116	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	53203399	53203765	3	-2.1433
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	53204641	66450811	5699	0.0244
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	66456203	66460573	24	-0.5632
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	66463848	103841522	23807	0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	103844669	103868754	46	-1.1232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	103872163	121460971	10863	0.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	121461273	121467242	4	-0.9231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	121467588	134307961	8210	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	134310764	134311325	2	-1.7695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	134313765	170892930	25147	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	52911	38245408	27411	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	38246749	38328597	116	-0.236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	38333037	70058374	17330	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	70061186	70064077	2	-2.3566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	70066179	75981829	2191	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	75991284	76017650	7	-0.8274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	76035366	109224328	20304	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	109224329	109241094	33	0.4581
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	109241146	125832210	10032	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	125832718	125833851	12	-0.8311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	125834112	133435717	4705	0.0212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133435735	133439824	19	0.4611
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133440046	133446381	10	0.8109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133448593	158819765	16308	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	21254	7836800	8005	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	7847301	7847316	2	1.869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	7864332	12260380	3304	-0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	12261219	12291857	39	-1.4833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	12305298	25030393	10487	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	25030439	25040167	24	-2.0731
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	25047021	40891153	10162	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	40897009	40897628	2	-2.121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	40902837	51193325	3517	0.0224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	51194564	51195976	9	-0.6886
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	51201131	72377865	13306	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	72377918	72379153	8	-0.9834
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	72382417	144769812	46548	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	144769958	144778951	12	-0.6407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	144790132	146268959	505	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	36587	43159599	31358	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	43177963	43707554	38	0.455
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	43712046	78960330	6990	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	78960449	78967224	27	0.5447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	78975948	89712414	7692	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	89743971	89744039	2	-1.7102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	89747777	140211215	33776	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	62759	746996	392	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	749276	751025	5	-1.1281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	756867	17934982	14479	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	17967560	17989863	3	-1.5407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	18011822	24415269	4358	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	24417680	24418060	11	-1.9873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	24418914	37495151	9164	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	37501154	37507620	2	1.604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	37519420	55069501	7944	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	55069622	55074124	3	-1.2155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	55075252	58182861	2207	0.0413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	58186381	58195800	36	-0.664
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	58196344	135356694	52449	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	188510	5217815	2770	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5217950	5218808	3	-1.3828
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5218869	5740499	529	0.0287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5743981	5765914	34	-0.5671
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5766037	18890488	9407	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	18891410	18918314	62	0.3115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	18918394	55119916	21849	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55130608	55133074	9	-0.8921
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55133087	55209585	50	-1.9097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55210152	71145403	8374	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	71155228	71156655	3	-2.6685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	71157169	134449982	44038	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	20703	9529176	6203	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9529959	9619559	22	0.4848
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9626236	11112094	1045	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	11113635	11132799	10	-1.1667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	11143141	30126848	13289	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	30130534	30134842	19	-0.5674
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	30134857	44186092	7927	0.0283
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	44190705	44195804	4	1.2818
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	44199559	69158125	15200	0.0187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	69158942	69164017	5	-0.9635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	69164032	76008039	4114	0.0259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	76012433	76089203	62	0.5562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	76097723	132288262	37151	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	17924949	31430622	9635	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	31430727	31436423	17	-0.7848
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	31438047	36969135	3906	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	36970036	36986330	17	0.5789
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	36986374	56649097	12537	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	56656271	56676381	34	-0.5004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	56687715	71374989	8993	0.027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	71375556	71378557	4	-2.7685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	71378606	84755066	9045	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	84759149	84765621	12	0.6857
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	84766964	94887678	6508	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	94890987	94894349	6	-0.9092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	94897500	114126499	13564	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	18072124	21651868	1713	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	21655997	21676090	24	-1.2225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	21676812	34498746	8261	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	34499112	34499497	2	-1.4899
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	34504169	34579354	42	-0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	34579399	34579525	3	-1.3861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	34580548	105531947	45041	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105550720	105550986	2	1.7067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105553173	105609107	25	0.2057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105612798	105632486	12	1.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105638145	105659304	10	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105660988	105674168	10	-0.3179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	105674564	106356482	398	0.077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	18276341	18682392	67	0.1168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	18700552	20224763	355	0.4458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	20232440	27209974	4019	0.0307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	27212047	27212532	2	-1.4663
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	27213388	74665417	29892	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	74678296	74682830	22	-1.9917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	74689234	100286563	17682	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	777	19851864	13526	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	19853151	19874863	29	-0.7443
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	19877755	31879021	6500	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	31882670	32496123	105	-0.2297
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	32496402	32496410	5	-3.6047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	32516775	33539331	166	-0.2467
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	33550900	54354095	6992	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	54355723	54356280	3	2.2742
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	54361849	54379945	14	0.339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	54387058	82937210	21181	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	82937412	82938142	2	-1.7752
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	82939054	88815036	3978	-0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	526	18296117	11439	0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	18299671	18437031	31	0.5612
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	18438028	41560151	12056	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	41563921	41719947	94	-0.3332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	41750187	42107479	48	0.8472
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	42120174	53567099	7363	0.0218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	53567513	53569093	4	-1.1618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	53572397	78643088	14247	0.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	1543	1892886	1314	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	1895358	1976214	95	-0.9259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	1976227	36511872	21405	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	36512068	36519323	30	0.4046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	36519332	61353975	17127	0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	61353988	61358176	16	0.7375
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	61358191	62057846	519	0.0376
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	62058414	62062341	9	-0.6341
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	62062569	63110203	665	0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63110303	63118245	19	-0.6162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63118698	75735026	9388	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	75735222	75742157	5	-1.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	75773942	76116029	196	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	41910	40541162	16816	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	40541333	40553688	22	-1.9048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	40558584	46052372	2804	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	46052414	46083995	27	0.6062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	46084494	46749186	371	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	46749865	46753396	4	-1.0809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	46753693	56823625	4910	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	56834164	56840009	11	-1.0492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	56846717	59991881	2059	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	59994795	60038989	23	0.6408
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	60039154	63789666	2305	0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	9305	1500503	1186	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1505190	1508999	21	-0.6255
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1509580	1530207	36	0.2604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1538257	1541893	5	1.5917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1545946	62426597	41225	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	9758742	43792481	22629	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	43795301	43797240	2	-2.1968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	43798095	46921385	1767	-0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	14432528	26092566	7620	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	26092699	26096318	2	-1.7044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	26096745	48211974	15252	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	48213536	48213664	2	-3.1927
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	48213759	49581321	675	-0.0487
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	108477	86863914	45798	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	86869178	86878491	11	0.6444
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	86882005	88699278	1096	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	88700630	88703924	2	-1.6304
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	88708939	154835548	37678	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	2710438	6161425	838	-2.5161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	6167901	6373572	91	-3.8114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	6375579	14099670	2609	-3.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	14099736	14103917	3	-7.6945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	14104283	17679836	1880	-2.9899
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	17688729	17688934	3	-7.6439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	17691665	19547873	900	-3.4293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	19551832	22268551	1051	-2.9658
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	22268856	24627620	513	-3.4382
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	24632208	25040317	90	-2.8406
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	25040616	25649572	79	-3.9055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	25664067	25938472	40	-2.6236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	25944418	25969325	12	-3.9167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	25969782	26129939	46	-2.5823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	26130472	26833326	251	-3.5956
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	26847504	57427647	183	-2.6732
