Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	61735	12839576	6524	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	12841928	13384473	62	0.5326
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	13384632	15061203	1053	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	15062626	15067574	4	-0.8502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	15068200	16149343	768	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	16149915	16153925	7	0.8924
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	16154201	17011510	352	0.0323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17011560	17245213	83	-0.3366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17245530	17253538	12	-1.0492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17257317	17282425	27	-0.3489
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	17283075	72768498	34138	0.0187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	72768916	72811133	45	-0.867
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	72811148	104221531	20072	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	104221631	104239986	12	-0.7178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	104256880	110227500	3613	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	110227515	110240178	18	-0.59
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	110242953	111376220	840	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	111377368	111388226	39	-0.7402
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	111392067	148870400	7460	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	148870937	149306068	157	-0.5388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	149336636	152555527	1518	0.0239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	152555706	152586540	33	-1.5699
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	152586576	152761923	174	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	152761939	152762890	14	-0.4463
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	152762903	157789258	2782	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	157792302	157797975	2	-1.5893
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	157798000	161523982	2520	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	161595202	161601933	2	-1.6301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	161604497	167764835	4933	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	167766183	167766919	4	-0.9996
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	167768513	192884136	16687	0.0203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	192887993	192888345	2	-1.506
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	192889166	193144647	186	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	193147736	193148351	4	-1.194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	193148531	196693451	2403	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	196696737	196801442	107	0.3104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	196801655	210071062	8829	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	210081613	210082065	2	-1.6891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	1	210083984	249224388	27117	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	12784	4200669	2984	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	4203187	4222703	38	0.3366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	4223167	34691069	21075	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	34699315	34737057	46	-0.4782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	34737163	35975973	878	0.0328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	35977790	35987916	6	-1.4595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	35987947	49533042	9871	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	49535768	49541190	5	-1.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	49545041	52754468	2281	0.0395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	52754480	52781542	39	0.8399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	52787949	76582327	15359	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	76584023	76586711	5	-0.9369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	76591844	89936766	7518	0.0244
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	89959761	89975620	4	1.0436
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	89995037	106874006	6776	0.0197
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106874497	106883229	8	-0.8292
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106883331	106887255	8	-2.4454
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	106887408	126442223	11500	0.0249
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	126451651	126451913	2	-2.2366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	126451932	164618825	23044	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	164619926	164646642	14	-0.5689
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	164648662	208354912	26377	0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	208354955	208359336	17	-0.6401
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	2	208359476	243089456	22133	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	60345	1067555	843	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	1067598	1067758	2	-1.7271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	1071362	6651211	4998	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	6651237	6655371	24	0.4156
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	6655415	26611649	14189	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26611667	26611885	4	-2.4459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26611898	26613201	8	0.0792
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26614974	26614984	7	-1.1639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	26614985	47399911	13440	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	47400331	47405451	3	-1.3431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	47409212	62061396	9170	0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	62062620	62063724	2	-1.4399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	62064517	64754032	2232	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	64754569	64755337	2	-1.4098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	64755437	68746259	2917	0.0236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	68746284	68747413	13	-1.4316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	68748758	98936627	15941	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	98936963	98949421	40	0.3175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	98950964	129762859	18734	0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	129763698	129806924	53	-0.2336
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	129806998	158350118	17668	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	158350884	158351545	2	-2.6821
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	158358872	162512739	2610	0.0215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	162513092	162626572	69	0.6477
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	162626603	174945912	7520	0.0276
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	174945927	174946371	4	1.2563
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	174946455	195276072	13161	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	195279210	195446742	30	0.3805
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	3	195446829	197896118	1193	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	12281	4103344	1703	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	4110230	4152760	10	-1.0409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	4160063	10210390	4087	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10223416	10247512	46	0.4727
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10248174	10392354	161	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10393154	10400511	14	-0.5108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	10400668	49267848	25816	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	49291192	49291355	2	-2.3132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	49297220	64705785	7618	0.0196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	64707581	64708129	5	0.9998
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	64708208	69372003	2885	0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	69374941	69485979	65	0.5201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	69489335	172056845	62248	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172060763	172075945	11	-0.8191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172080042	172369346	223	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172374884	172377458	9	1.9468
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	172377710	190195118	12134	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	190195622	190199771	4	-2.3383
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	4	190211271	191027923	384	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	15532	2737525	1722	-0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	2737700	2738455	2	-1.6705
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	2754522	12819313	8492	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	12819375	12826650	8	-1.4085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	12833857	17345088	3072	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	17347706	17358269	7	-0.8716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	17359196	57321646	22570	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	57326027	57333515	31	1.8962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	5	57333533	180790320	77160	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	149661	253861	99	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	254267	382897	105	-0.4693
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	384109	23057637	17529	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	23060991	23060999	3	-1.45
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	23064254	28021269	3167	0.0253
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	28021589	28021633	2	-1.6751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	28023751	29837072	831	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	29837187	29871636	21	0.4833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	29874642	32686196	1290	-0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32688615	32690797	9	0.7489
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32690812	32690830	2	2.7993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	32692227	33937999	762	-0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	33938743	33942705	7	-1.0744
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	33944586	40364325	4158	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	40365601	40369293	6	-1.0308
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	40370499	53094861	8117	0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	53095440	53095806	3	-2.1433
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	53096682	66394090	5700	0.0243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	66399482	66403852	24	-0.5632
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	66407127	103734829	23805	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	103737976	103762061	46	-1.1232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	103765470	121419272	10867	0.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	121419574	121425543	4	-0.9231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	121425889	134266268	8211	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	134269071	134269632	2	-1.7695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	6	134272072	171051005	25149	0.0122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	43355	38278883	27409	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	38280224	38362072	116	-0.236
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	38366512	70420438	17329	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	70423250	70426141	2	-2.3566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	70428243	76143893	2191	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	76153348	76179714	7	-0.8274
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	76197430	109437092	20309	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	109437093	109453858	33	0.4581
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	109453910	126044974	10033	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	126045482	126046615	12	-0.8311
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	126046876	133785177	4706	0.0212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133785195	133789284	19	0.4611
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133789506	133795841	10	0.8109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	7	133798053	159127004	16307	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	31254	7799390	8006	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	7809891	7809906	2	1.869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	7826922	12216009	3302	-0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	12216848	12247486	39	-1.4833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	12260927	24974476	10488	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	24974522	24984250	24	-2.0731
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	24991104	40771996	10163	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	40777852	40778471	2	-2.121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	40783680	51030772	3517	0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	51032011	51033423	9	-0.6886
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	51038578	72215311	13309	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	72215364	72216599	8	-0.9834
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	72219863	144698669	46551	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	144698815	144707808	12	-0.6407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	8	144718989	146298155	505	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	46587	43169603	31366	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	43187967	43767558	38	0.455
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	43772050	79770510	6992	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	79770629	79777404	27	0.5447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	79786128	90522594	7692	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	90554151	90554219	2	-1.7102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	9	90557957	141091394	33781	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	72759	756996	392	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	759276	761025	5	-1.1281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	766867	17894976	14479	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	17927554	17949857	3	-1.5407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	17971816	24375263	4357	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	24377674	24378054	11	-1.9873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	24378908	37455145	9164	0.0167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	37461148	37467614	2	1.604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	37479414	55399495	7944	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	55399616	55404118	3	-1.2155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	55405246	58512855	2208	0.0413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	58516375	58525794	36	-0.664
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	10	58526338	135506704	52446	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	198510	5261239	2769	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5261374	5262232	3	-1.3828
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5262293	5783923	529	0.0287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5787405	5809338	34	-0.5671
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	5809461	18933912	9407	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	18934834	18961738	62	0.3115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	18961818	55363340	21846	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55374032	55376498	9	-0.8921
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55376511	55453009	50	-1.9097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	55453576	71467755	8374	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	71477580	71479007	3	-2.6685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	11	71479521	134944770	44031	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	150442	9518240	6146	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9518864	9518953	2	-1.3413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9519046	9637909	54	-0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9638692	9728292	23	0.471
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	9734969	11220827	1044	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	11222368	11241532	10	-1.1667
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	11251874	30235581	13287	0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	30239267	30243575	19	-0.5674
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	30243590	45899825	7925	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	45904438	45909537	4	1.2818
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	45913292	70871858	15199	0.0188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	70872675	70877750	5	-0.9635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	70877765	77483908	4113	0.0261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	77488302	77565072	62	0.5562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	12	77573592	133778189	37150	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	19026949	32532622	9634	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	32532727	32538423	17	-0.7848
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	32540047	38071135	3905	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	38072036	38088330	17	0.5789
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	38088374	57751096	12537	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	57758270	57778380	34	-0.5004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	57789714	72476988	8992	0.027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	72477555	72480556	4	-2.7685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	72480605	85857065	9045	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	85861148	85867620	12	0.6857
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	85868963	96089677	6507	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	96092986	96096348	6	-0.9092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	13	96099499	115108397	13564	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	19002124	22582028	1713	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	22586157	22606250	24	-1.2225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	22606972	35428995	8260	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	35429361	35429746	2	-1.4899
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	35434418	35509603	42	-0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	35509648	35509774	3	-1.3861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	35510797	106460902	45039	0.0193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106479675	106479941	2	1.7067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106482128	106538062	25	0.2057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106541753	106561441	12	1.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106567100	106588259	10	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106589943	106603123	10	-0.3179
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	14	106603519	107285437	398	0.077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	20016328	20422378	67	0.1168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	20440538	22673399	355	0.4458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	22681076	29422682	4020	0.0307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	29424755	29425240	2	-1.4663
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	29426096	76878362	29889	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	76891241	76895775	22	-1.9917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	15	76902179	102469040	17681	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	60777	19944363	13525	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	19945650	19967362	29	-0.7443
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	19970254	31971520	6499	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	31975169	32588622	105	-0.2297
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	32588901	32588909	5	-3.6047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	32609274	33631830	166	-0.2467
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	33643399	55796594	6992	0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	55798222	55798779	3	2.2742
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	55804348	55822444	14	0.339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	55829557	84379709	21102	0.0133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	84379911	84380641	2	-1.7752
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	16	84381553	90287535	3981	-0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	526	18355392	11440	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	18358946	18496306	31	0.5612
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	18497303	44204373	12054	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	44208144	44364170	94	-0.3332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	44394412	44752300	48	0.8472
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	44764994	56212100	7365	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	56212514	56214094	4	-1.1618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	17	56217398	81049726	14246	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	11543	1902886	1315	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	1905358	1986214	95	-0.9259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	1986227	38257874	21403	0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	38258070	38265325	30	0.4046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	38265334	63202995	17126	0.0206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63203454	63207196	15	0.7414
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63207211	63906866	519	0.0376
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63907434	63911361	9	-0.6341
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	63911589	64959223	665	0.0286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	64959323	64967265	19	-0.6162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	64967718	77634038	9388	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	77634234	77641169	5	-1.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	18	77672954	78015057	196	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	90910	35849322	16815	0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	35849493	35861848	22	-1.9048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	35866744	41360532	2804	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	41360574	41392155	27	0.6062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	41392654	42057346	371	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	42058025	42061556	4	-1.0809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	42061853	52131813	4910	0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	52142352	52148197	11	-1.0492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	52154905	55300069	2059	0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	55302983	55347177	23	0.6408
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	19	55347342	59097854	2305	0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	61305	1552503	1186	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1557190	1560999	21	-0.6255
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1561580	1582207	36	0.2604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1590257	1593893	5	1.5917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	20	1597946	62956153	41228	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	10736871	44968053	22629	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	44970873	44972812	2	-2.1968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	21	44973667	48096957	1766	-0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	16052528	27762566	7620	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	27762699	27766318	2	-1.7044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	27766745	49825970	15251	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	49827532	49827660	2	-3.1927
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	22	49827755	51234455	676	-0.0485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	168477	86977258	45810	0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	86982522	86991835	11	0.6444
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	X	86995349	155182354	38751	0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	2650438	6101425	871	-2.4508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	6107901	6313572	91	-3.8114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	6315579	15590276	2616	-3.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	15590342	15594523	3	-7.6945
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	15594889	19170442	1884	-2.985
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	19179335	19179540	3	-7.6439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	19182271	21088485	900	-3.4293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	21092444	23859163	1052	-2.9635
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	23859468	26631228	604	-3.3495
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	26631371	26928589	40	-4.3075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	26947771	27315972	43	-3.4452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	27367487	27529084	35	-2.5546
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	27535030	27559937	12	-3.9167
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	27560394	27720551	46	-2.5823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	27721084	28452016	258	-3.5741
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F05_801996	Y	28457337	59018259	176	-2.6679
