Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	3208470	236921904	123607	0.0507
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	236922261	236922717	3	-1.2461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	236929072	245880329	5249	0.1
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	2	474222	242124735	131083	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	526235	55371612	30652	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	55378210	55378225	2	-1.9027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	55379035	109191646	27741	-0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	109191873	109192434	5	-1.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	109192547	141190945	18234	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	141192307	141192780	2	-1.7685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	141196811	199023074	29557	-0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	4	1043934	189836143	102559	0.0429
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	967233	1353025	58	0.0802
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	1353584	1361552	2	-1.4323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	1362074	21140231	12362	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21149479	21217115	37	0.6492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21217240	21428092	122	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21428540	21769088	99	0.6171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21776969	114144906	47865	-0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	114145079	114145100	2	-2.5237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	114145280	180293075	39780	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	959281	8761113	5715	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	8764258	8764331	2	-1.8168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	8766686	19561006	7240	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	19561408	19561573	2	-2.3527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	19562717	22671867	2200	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	22673069	22673106	2	-2.331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	22673131	65873250	20370	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	65873600	65878714	7	-1.1221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	65979838	170745844	60755	-0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	671810	98063348	49990	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	98068593	98068638	2	-1.5019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	98071355	158077879	31196	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	607667	25010315	13997	0.0328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	25012277	25023137	3	-1.9395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	25023296	145304484	67409	0.0278
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	779932	133203040	64755	-0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	133204140	133213012	4	-0.9968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	133215393	140058573	3139	0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	10	405240	135075077	80724	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	11	446120	133647740	77128	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	760163	108420042	61647	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	108420615	108421475	2	-1.5207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	108421917	131671419	12166	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	18348806	73612344	31396	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	73616120	73619032	4	-1.2702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	73620387	114005560	25126	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	14	19571208	105059083	49344	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	21238778	59533232	21074	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	59539198	59670169	126	0.6208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	59671202	99701830	23233	0.0175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	593460	86602280	40628	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	86609062	86610624	3	-1.9057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	86617076	87907437	172	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	17	933971	78510305	36947	0.0221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	18	319586	75210228	42581	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	19	235018	63570038	23916	-0.0597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	20	403764	61690281	37221	0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	14269492	19841082	3525	-0.0965
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	19847751	19848093	2	1.6218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	19851107	46503202	17023	-0.0649
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	15803930	32196854	7151	-0.7521
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	32197464	32197479	2	-5.2664
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	32199834	45298570	7689	-0.7284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	45300798	45306930	6	-2.9158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	45307853	47717016	1861	-0.7883
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	3167107	121248397	48651	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	121248419	121248439	2	-1.5966
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	121248840	138329191	8093	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	138329277	138333701	2	-2.6128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	138333943	154558783	6968	0.0039
