Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	3218610	238855281	123661	0.0507
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	238855638	238856094	3	-1.2461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	1	238862449	247813706	5248	0.1
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	2	484222	242476062	131075	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	2212571	55396572	30652	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	55403170	55403185	2	-1.9027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	55403995	107708956	27736	-0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	107709183	107709744	5	-1.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	107709857	139708255	18233	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	139709617	139710090	2	-1.7685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	3	139714121	197538677	29557	-0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	4	1053934	188763651	102564	0.0429
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	914233	1300025	58	0.0802
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	1300584	1308552	2	-1.4323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	1309074	21104474	12364	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21113722	21181358	37	0.6492
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21181483	21392335	122	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21392783	21733331	99	0.6171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	21741212	114117007	47862	-0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	114117180	114117201	2	-2.5237
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	5	114117381	180360469	39781	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	1014281	8816114	5716	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	8819259	8819332	2	-1.8168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	8821687	19453027	7240	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	19453429	19453594	2	-2.3527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	19454738	22563888	2200	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	22565090	22565127	2	-2.331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	22565152	65816529	20372	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	65816879	65821993	7	-1.1221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	6	65923117	170903919	60761	-0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	705284	98225412	49990	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	98230657	98230702	2	-1.5019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	7	98233419	158385118	31197	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	617667	24954398	13997	0.0328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	24956360	24967220	3	-1.9395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	8	24967379	145232496	67416	0.0278
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	789932	134213219	64767	-0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	134214319	134223191	4	-0.9968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	9	134225572	140938752	3139	0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	10	415240	135225087	80722	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	11	456120	134142530	77118	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	889902	109935659	61643	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	109936232	109937092	2	-1.5207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	12	109937534	133161346	12165	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	19450806	74714343	31393	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	74718119	74721031	4	-1.2702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	13	74722386	114987458	25125	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	14	20501368	105988038	49342	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	23687685	61745940	21073	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	61751906	61882877	126	0.6208
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	15	61883910	101884307	23232	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	653459	88044779	40565	0.0153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	88051561	88053123	3	-1.9057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	16	88059575	89379936	172	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	17	987221	80917016	36947	0.0221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	18	329586	77109240	42578	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	19	284018	58878226	23916	-0.0597
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	20	455764	40534319	22706	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	20	40534573	40534765	2	-1.74
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	20	40534844	62219837	14516	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	15347621	20919211	3525	-0.0965
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	20925880	20926222	2	1.6218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	21	20929236	47678774	17022	-0.0648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	17423930	33866854	7150	-0.7519
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	33867464	33867479	2	-5.2664
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	33869834	46919906	7689	-0.7284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	46922134	46928266	6	-2.9158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	22	46929189	49331012	1861	-0.7883
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	3157107	121420716	48668	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	121420738	121420758	2	-1.5966
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	121421159	138501525	8098	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	138501611	138506035	2	-2.6128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_F09_801992	X	138506277	154905589	6963	0.0038
