Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	1	3208470	245880329	128892	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	2	474222	242124735	131138	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	3	526235	99785741	53183	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	3	99785872	99786257	2	-1.8629
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	3	99788750	199023074	53059	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	1043934	146704676	79993	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	146705341	146706774	4	-1.2579
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	146707433	147130040	219	-0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	147132425	147149519	3	1.0232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	147149718	149019917	1106	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	149021807	149029515	2	-1.4147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	149029690	167278505	10205	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	167278854	167280115	3	-1.8191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	4	167285443	189836143	11052	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	5	967233	34796349	19828	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	5	34796462	34797450	2	-1.7483
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	5	34797882	180293075	80524	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	959281	15859309	10381	0.0076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	15859960	15859977	2	-1.6111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	15860545	122253241	56676	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	122254625	122261243	4	-1.4292
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	122261261	134072461	7341	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	134073042	134077297	3	-1.1583
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	134080374	163431375	18372	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	163431964	163432467	3	-1.3692
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	6	163434113	170745844	3551	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	7	671810	103335292	52050	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	7	103336960	103337002	2	-1.5841
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	7	103345054	104091072	532	-0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	7	104091149	104091164	2	-1.7481
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	7	104091176	158077879	28640	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	8	607667	145304484	81437	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	9	779932	140058573	67938	0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	10	405240	58848465	33348	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	10	58851943	58852354	2	-1.8339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	10	58852426	135075077	47388	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	446120	38132264	23836	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	38133489	38135603	3	-1.8724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	38135890	78951353	18019	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	78953265	78954160	4	-1.3994
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	78960628	125065721	29475	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	125065872	125066211	2	-1.5534
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	11	125067162	133647740	5826	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	12	760163	131671419	73847	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	13	18348806	114005560	56557	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	14	19571208	105059083	49377	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	15	21238778	99701830	44455	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	16	593460	87907437	40832	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	17	933971	38111029	16655	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	17	38119538	38120350	2	-1.5793
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	17	38121952	78510305	20289	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	18	319586	75210228	42596	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	19	235018	63570038	23936	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	20	403764	61690281	37241	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	21	14269492	46503202	20552	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	22	15803930	47717016	16905	-0.068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G03_802014	X	3167107	154558783	63726	0.0023
