Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	1	3208470	245880329	128972	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	2	474222	161813983	85161	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	2	161816815	161817938	2	-1.6107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	2	161824550	205820689	24046	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	2	205824033	205826729	5	-0.9037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	2	205830439	242124735	22003	0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	3	526235	199023074	106315	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	1043934	42527740	25690	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	42528549	42531155	2	-1.7898
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	42532440	93781774	25455	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	93784637	93788329	3	-1.1989
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	93792822	104735399	6037	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	104735532	104737956	2	-1.9796
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	4	104743902	189836143	45458	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	5	967233	180293075	100421	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	6	959281	170745844	96406	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	7	671810	158077879	81265	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	8	607667	145304484	81480	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	9	779932	118732985	55809	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	9	118739663	118797517	66	-1.1876
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	9	118802528	140058573	12100	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	10	405240	53885175	30800	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	10	53889826	53892660	2	-1.5081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	10	53892706	135075077	50007	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	11	446120	7438802	3542	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	11	7439521	7439601	2	-1.6707
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	11	7442287	133647740	73676	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	12	760163	72154883	39331	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	12	72155217	72156587	2	-1.708
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	12	72156602	131671419	34565	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	13	18348806	114005560	56592	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	14	19571208	105059083	49405	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	15	21238778	99701830	44499	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	16	593460	87907437	40853	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	17	933971	78510305	36972	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	18	319586	75210228	42627	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	19	235018	5584238	1375	-0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	19	5584878	5587364	3	-1.1228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	19	5588888	55330387	19106	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	19	55340381	55352337	3	-2.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	19	55353260	63570038	3459	-0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	20	403764	39897628	22671	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	20	39897719	39898236	4	-1.0343
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	20	39902036	61690281	14593	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	21	14269492	46503202	20566	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	15803930	41548235	12479	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	41553893	41555136	3	-1.3304
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	41556543	42719541	819	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	42719651	42722048	2	-1.755
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	42722156	45908122	2139	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	45909609	45909645	2	1.1318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	22	45909984	47717016	1476	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_G10_802102	X	3167107	154558783	63743	0.0028
