Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01D	DNA	EFO	SRS605062	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01D A22735 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22735	SRX539997	"WGS analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-01A-01D A22735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22735_3_lanes_dupsFlagged.bam	SRR1283065	@dbgap@:reads/SRP012005/SRS605062/SRX539997/SRR1283065/SRR1283065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PABKLN-01A-01D.fusion.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01D	DNA	EFO	SRS605062	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01D A22735 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22735	SRX539997	"WGS analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-01A-01D A22735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22735_3_lanes_dupsFlagged.bam	SRR1283065	@dbgap@:reads/SRP012005/SRS605062/SRX539997/SRR1283065/SRR1283065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PABKLN-01A-01D.indel.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01D	DNA	EFO	SRS605062	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01D A22735 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22735	SRX539997	"WGS analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-01A-01D A22735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22735_3_lanes_dupsFlagged.bam	SRR1283065	@dbgap@:reads/SRP012005/SRS605062/SRX539997/SRR1283065/SRR1283065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PABKLN-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01D	DNA	EFO	SRS605062	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01D A22735 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22735	SRX539997	"WGS analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-01A-01D A22735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22735_3_lanes_dupsFlagged.bam	SRR1283065	@dbgap@:reads/SRP012005/SRS605062/SRX539997/SRR1283065/SRR1283065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PABKLN-01A-01D_TARGET-52-PABKLN-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-11A-01D	DNA	EFO	SRS605066	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-11A-01D A22736 library	PAIRED	GENOMIC	WGS	RANDOM	336	A22736	SRX540004	"WGS analysis of normal sample TARGET-52-PABKLN-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-11A-01D A22736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22736_3_lanes_dupsFlagged.bam	SRR1283055	@dbgap@:reads/SRP012005/SRS605066/SRX540004/SRR1283055/SRR1283055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PABKLN-11A-01D.fusion.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-11A-01D	DNA	EFO	SRS605066	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-11A-01D A22736 library	PAIRED	GENOMIC	WGS	RANDOM	336	A22736	SRX540004	"WGS analysis of normal sample TARGET-52-PABKLN-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-11A-01D A22736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22736_3_lanes_dupsFlagged.bam	SRR1283055	@dbgap@:reads/SRP012005/SRS605066/SRX540004/SRR1283055/SRR1283055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PABKLN-11A-01D.indel.vcf	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-11A-01D	DNA	EFO	SRS605066	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-11A-01D A22736 library	PAIRED	GENOMIC	WGS	RANDOM	336	A22736	SRX540004	"WGS analysis of normal sample TARGET-52-PABKLN-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-11A-01D A22736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22736_3_lanes_dupsFlagged.bam	SRR1283055	@dbgap@:reads/SRP012005/SRS605066/SRX540004/SRR1283055/SRR1283055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PABKLN-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-11A-01D	DNA	EFO	SRS605066	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-11A-01D A22736 library	PAIRED	GENOMIC	WGS	RANDOM	336	A22736	SRX540004	"WGS analysis of normal sample TARGET-52-PABKLN-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PABKLN-11A-01D A22736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22736_3_lanes_dupsFlagged.bam	SRR1283055	@dbgap@:reads/SRP012005/SRS605066/SRX540004/SRR1283055/SRR1283055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PABKLN-01A-01D_TARGET-52-PABKLN-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01D	DNA	EFO	SRS924785	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01D A47583 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47583	SRX1013010	"WGS analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-01A-01D A47583 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47583_2_lanes_dupsFlagged.bam	SRR2001421	@dbgap@:reads/SRP012005/SRS924785/SRX1013010/SRR2001421/SRR2001421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADWRZ-01A-01D.fusion.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01D	DNA	EFO	SRS924785	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01D A47583 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47583	SRX1013010	"WGS analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-01A-01D A47583 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47583_2_lanes_dupsFlagged.bam	SRR2001421	@dbgap@:reads/SRP012005/SRS924785/SRX1013010/SRR2001421/SRR2001421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADWRZ-01A-01D.indel.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01D	DNA	EFO	SRS924785	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01D A47583 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47583	SRX1013010	"WGS analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-01A-01D A47583 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47583_2_lanes_dupsFlagged.bam	SRR2001421	@dbgap@:reads/SRP012005/SRS924785/SRX1013010/SRR2001421/SRR2001421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PADWRZ-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01D	DNA	EFO	SRS924785	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01D A47583 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47583	SRX1013010	"WGS analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-01A-01D A47583 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47583_2_lanes_dupsFlagged.bam	SRR2001421	@dbgap@:reads/SRP012005/SRS924785/SRX1013010/SRR2001421/SRR2001421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PADWRZ-01A-01D_TARGET-52-PADWRZ-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-10A-01D	DNA	EFO	SRS924793	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-10A-01D A47601 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47601	SRX1013002	"WGS analysis of normal sample TARGET-52-PADWRZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-10A-01D A47601 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47601_2_lanes_dupsFlagged.bam	SRR2001417	@dbgap@:reads/SRP012005/SRS924793/SRX1013002/SRR2001417/SRR2001417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADWRZ-10A-01D.fusion.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-10A-01D	DNA	EFO	SRS924793	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-10A-01D A47601 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47601	SRX1013002	"WGS analysis of normal sample TARGET-52-PADWRZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-10A-01D A47601 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47601_2_lanes_dupsFlagged.bam	SRR2001417	@dbgap@:reads/SRP012005/SRS924793/SRX1013002/SRR2001417/SRR2001417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADWRZ-10A-01D.indel.vcf	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-10A-01D	DNA	EFO	SRS924793	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-10A-01D A47601 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47601	SRX1013002	"WGS analysis of normal sample TARGET-52-PADWRZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-10A-01D A47601 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47601_2_lanes_dupsFlagged.bam	SRR2001417	@dbgap@:reads/SRP012005/SRS924793/SRX1013002/SRR2001417/SRR2001417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PADWRZ-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-10A-01D	DNA	EFO	SRS924793	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-10A-01D A47601 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47601	SRX1013002	"WGS analysis of normal sample TARGET-52-PADWRZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PADWRZ-10A-01D A47601 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47601_2_lanes_dupsFlagged.bam	SRR2001417	@dbgap@:reads/SRP012005/SRS924793/SRX1013002/SRR2001417/SRR2001417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PADWRZ-01A-01D_TARGET-52-PADWRZ-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01D	DNA	EFO	SRS924792	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01D A47588 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47588	SRX1013003	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PADYCE-01A-01D A47588 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47588_2_lanes_dupsFlagged.bam	SRR2001412	@dbgap@:reads/SRP012005/SRS924792/SRX1013003/SRR2001412/SRR2001412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYCE-01A-01D.fusion.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01D	DNA	EFO	SRS924792	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01D A47588 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47588	SRX1013003	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PADYCE-01A-01D A47588 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47588_2_lanes_dupsFlagged.bam	SRR2001412	@dbgap@:reads/SRP012005/SRS924792/SRX1013003/SRR2001412/SRR2001412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYCE-01A-01D.indel.vcf	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01D	DNA	EFO	SRS924792	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01D A47588 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47588	SRX1013003	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PADYCE-01A-01D A47588 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47588_2_lanes_dupsFlagged.bam	SRR2001412	@dbgap@:reads/SRP012005/SRS924792/SRX1013003/SRR2001412/SRR2001412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PADYCE-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01D	DNA	EFO	SRS605547	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01D A22753 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22753	SRX540527	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-01A-01D A22753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22753_3_lanes_dupsFlagged.bam	SRR1283680	@dbgap@:reads/SRP012005/SRS605547/SRX540527/SRR1283680/SRR1283680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYZI-01A-01D.fusion.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01D	DNA	EFO	SRS605547	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01D A22753 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22753	SRX540527	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-01A-01D A22753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22753_3_lanes_dupsFlagged.bam	SRR1283680	@dbgap@:reads/SRP012005/SRS605547/SRX540527/SRR1283680/SRR1283680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYZI-01A-01D.indel.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01D	DNA	EFO	SRS605547	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01D A22753 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22753	SRX540527	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-01A-01D A22753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22753_3_lanes_dupsFlagged.bam	SRR1283680	@dbgap@:reads/SRP012005/SRS605547/SRX540527/SRR1283680/SRR1283680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PADYZI-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01D	DNA	EFO	SRS605547	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01D A22753 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22753	SRX540527	"WGS analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-01A-01D A22753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22753_3_lanes_dupsFlagged.bam	SRR1283680	@dbgap@:reads/SRP012005/SRS605547/SRX540527/SRR1283680/SRR1283680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PADYZI-01A-01D_TARGET-52-PADYZI-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-10A-01D	DNA	EFO	SRS605546	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-10A-01D A22754 library	PAIRED	GENOMIC	WGS	RANDOM	344	A22754	SRX540526	"WGS analysis of normal sample TARGET-52-PADYZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-10A-01D A22754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22754_3_lanes_dupsFlagged.bam	SRR1283682	@dbgap@:reads/SRP012005/SRS605546/SRX540526/SRR1283682/SRR1283682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYZI-10A-01D.fusion.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-10A-01D	DNA	EFO	SRS605546	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-10A-01D A22754 library	PAIRED	GENOMIC	WGS	RANDOM	344	A22754	SRX540526	"WGS analysis of normal sample TARGET-52-PADYZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-10A-01D A22754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22754_3_lanes_dupsFlagged.bam	SRR1283682	@dbgap@:reads/SRP012005/SRS605546/SRX540526/SRR1283682/SRR1283682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PADYZI-10A-01D.indel.vcf	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-10A-01D	DNA	EFO	SRS605546	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-10A-01D A22754 library	PAIRED	GENOMIC	WGS	RANDOM	344	A22754	SRX540526	"WGS analysis of normal sample TARGET-52-PADYZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-10A-01D A22754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22754_3_lanes_dupsFlagged.bam	SRR1283682	@dbgap@:reads/SRP012005/SRS605546/SRX540526/SRR1283682/SRR1283682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PADYZI-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-10A-01D	DNA	EFO	SRS605546	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-10A-01D A22754 library	PAIRED	GENOMIC	WGS	RANDOM	344	A22754	SRX540526	"WGS analysis of normal sample TARGET-52-PADYZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PADYZI-10A-01D A22754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22754_3_lanes_dupsFlagged.bam	SRR1283682	@dbgap@:reads/SRP012005/SRS605546/SRX540526/SRR1283682/SRR1283682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PADYZI-01A-01D_TARGET-52-PADYZI-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01D	DNA	EFO	SRS924779	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01D A47589 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47589	SRX1013016	"WGS analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-01A-01D A47589 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47589_2_lanes_dupsFlagged.bam	SRR2001419	@dbgap@:reads/SRP012005/SRS924779/SRX1013016/SRR2001419/SRR2001419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAEHIP-01A-01D.fusion.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01D	DNA	EFO	SRS924779	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01D A47589 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47589	SRX1013016	"WGS analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-01A-01D A47589 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47589_2_lanes_dupsFlagged.bam	SRR2001419	@dbgap@:reads/SRP012005/SRS924779/SRX1013016/SRR2001419/SRR2001419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAEHIP-01A-01D.indel.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01D	DNA	EFO	SRS924779	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01D A47589 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47589	SRX1013016	"WGS analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-01A-01D A47589 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47589_2_lanes_dupsFlagged.bam	SRR2001419	@dbgap@:reads/SRP012005/SRS924779/SRX1013016/SRR2001419/SRR2001419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAEHIP-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01D	DNA	EFO	SRS924779	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01D A47589 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47589	SRX1013016	"WGS analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-01A-01D A47589 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47589_2_lanes_dupsFlagged.bam	SRR2001419	@dbgap@:reads/SRP012005/SRS924779/SRX1013016/SRR2001419/SRR2001419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAEHIP-01A-01D_TARGET-52-PAEHIP-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-10A-01D	DNA	EFO	SRS924797	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-10A-01D A47606 library	PAIRED	GENOMIC	WGS	RANDOM	522	A47606	SRX1012998	"WGS analysis of normal sample TARGET-52-PAEHIP-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-10A-01D A47606 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47606_2_lanes_dupsFlagged.bam	SRR2001422	@dbgap@:reads/SRP012005/SRS924797/SRX1012998/SRR2001422/SRR2001422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAEHIP-10A-01D.fusion.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-10A-01D	DNA	EFO	SRS924797	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-10A-01D A47606 library	PAIRED	GENOMIC	WGS	RANDOM	522	A47606	SRX1012998	"WGS analysis of normal sample TARGET-52-PAEHIP-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-10A-01D A47606 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47606_2_lanes_dupsFlagged.bam	SRR2001422	@dbgap@:reads/SRP012005/SRS924797/SRX1012998/SRR2001422/SRR2001422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAEHIP-10A-01D.indel.vcf	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-10A-01D	DNA	EFO	SRS924797	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-10A-01D A47606 library	PAIRED	GENOMIC	WGS	RANDOM	522	A47606	SRX1012998	"WGS analysis of normal sample TARGET-52-PAEHIP-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-10A-01D A47606 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47606_2_lanes_dupsFlagged.bam	SRR2001422	@dbgap@:reads/SRP012005/SRS924797/SRX1012998/SRR2001422/SRR2001422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAEHIP-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-10A-01D	DNA	EFO	SRS924797	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-10A-01D A47606 library	PAIRED	GENOMIC	WGS	RANDOM	522	A47606	SRX1012998	"WGS analysis of normal sample TARGET-52-PAEHIP-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAEHIP-10A-01D A47606 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47606_2_lanes_dupsFlagged.bam	SRR2001422	@dbgap@:reads/SRP012005/SRS924797/SRX1012998/SRR2001422/SRR2001422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAEHIP-01A-01D_TARGET-52-PAEHIP-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01D	DNA	EFO	SRS924748	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01D A47570 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47570	SRX1012975	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAJLRA-01A-01D A47570 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47570_2_lanes_dupsFlagged.bam	SRR2001369	@dbgap@:reads/SRP012005/SRS924748/SRX1012975/SRR2001369/SRR2001369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLRA-01A-01D.fusion.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01D	DNA	EFO	SRS924748	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01D A47570 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47570	SRX1012975	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAJLRA-01A-01D A47570 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47570_2_lanes_dupsFlagged.bam	SRR2001369	@dbgap@:reads/SRP012005/SRS924748/SRX1012975/SRR2001369/SRR2001369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLRA-01A-01D.indel.vcf	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01D	DNA	EFO	SRS924748	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01D A47570 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47570	SRX1012975	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAJLRA-01A-01D A47570 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47570_2_lanes_dupsFlagged.bam	SRR2001369	@dbgap@:reads/SRP012005/SRS924748/SRX1012975/SRR2001369/SRR2001369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJLRA-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01D	DNA	EFO	SRS605060	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01D A22737 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22737	SRX539986	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-01A-01D A22737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22737_3_lanes_dupsFlagged.bam	SRR1283043	@dbgap@:reads/SRP012005/SRS605060/SRX539986/SRR1283043/SRR1283043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLWM-01A-01D.fusion.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01D	DNA	EFO	SRS605060	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01D A22737 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22737	SRX539986	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-01A-01D A22737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22737_3_lanes_dupsFlagged.bam	SRR1283043	@dbgap@:reads/SRP012005/SRS605060/SRX539986/SRR1283043/SRR1283043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLWM-01A-01D.indel.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01D	DNA	EFO	SRS605060	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01D A22737 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22737	SRX539986	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-01A-01D A22737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22737_3_lanes_dupsFlagged.bam	SRR1283043	@dbgap@:reads/SRP012005/SRS605060/SRX539986/SRR1283043/SRR1283043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJLWM-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01D	DNA	EFO	SRS605060	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01D A22737 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22737	SRX539986	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-01A-01D A22737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22737_3_lanes_dupsFlagged.bam	SRR1283043	@dbgap@:reads/SRP012005/SRS605060/SRX539986/SRR1283043/SRR1283043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJLWM-01A-01D_TARGET-52-PAJLWM-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-11A-01D	DNA	EFO	SRS605058	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-11A-01D A22738 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22738	SRX539981	"WGS analysis of normal sample TARGET-52-PAJLWM-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-11A-01D A22738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22738_3_lanes_dupsFlagged.bam	SRR1283044	@dbgap@:reads/SRP012005/SRS605058/SRX539981/SRR1283044/SRR1283044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLWM-11A-01D.fusion.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-11A-01D	DNA	EFO	SRS605058	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-11A-01D A22738 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22738	SRX539981	"WGS analysis of normal sample TARGET-52-PAJLWM-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-11A-01D A22738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22738_3_lanes_dupsFlagged.bam	SRR1283044	@dbgap@:reads/SRP012005/SRS605058/SRX539981/SRR1283044/SRR1283044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJLWM-11A-01D.indel.vcf	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-11A-01D	DNA	EFO	SRS605058	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-11A-01D A22738 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22738	SRX539981	"WGS analysis of normal sample TARGET-52-PAJLWM-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-11A-01D A22738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22738_3_lanes_dupsFlagged.bam	SRR1283044	@dbgap@:reads/SRP012005/SRS605058/SRX539981/SRR1283044/SRR1283044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJLWM-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-11A-01D	DNA	EFO	SRS605058	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-11A-01D A22738 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22738	SRX539981	"WGS analysis of normal sample TARGET-52-PAJLWM-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJLWM-11A-01D A22738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22738_3_lanes_dupsFlagged.bam	SRR1283044	@dbgap@:reads/SRP012005/SRS605058/SRX539981/SRR1283044/SRR1283044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJLWM-01A-01D_TARGET-52-PAJLWM-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01D	DNA	EFO	SRS924783	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01D A47584 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47584	SRX1013012	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAJMBW-01A-01D A47584 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47584_2_lanes_dupsFlagged.bam	SRR2001409	@dbgap@:reads/SRP012005/SRS924783/SRX1013012/SRR2001409/SRR2001409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMBW-01A-01D.fusion.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01D	DNA	EFO	SRS924783	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01D A47584 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47584	SRX1013012	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAJMBW-01A-01D A47584 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47584_2_lanes_dupsFlagged.bam	SRR2001409	@dbgap@:reads/SRP012005/SRS924783/SRX1013012/SRR2001409/SRR2001409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMBW-01A-01D.indel.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01D	DNA	EFO	SRS924783	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01D A47584 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47584	SRX1013012	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAJMBW-01A-01D A47584 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47584_2_lanes_dupsFlagged.bam	SRR2001409	@dbgap@:reads/SRP012005/SRS924783/SRX1013012/SRR2001409/SRR2001409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJMBW-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01D	DNA	EFO	SRS924783	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01D A47584 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47584	SRX1013012	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAJMBW-01A-01D A47584 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47584_2_lanes_dupsFlagged.bam	SRR2001409	@dbgap@:reads/SRP012005/SRS924783/SRX1013012/SRR2001409/SRR2001409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJMBW-01A-01D_TARGET-52-PAJMBW-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-10A-01D	DNA	EFO	SRS924781	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-10A-01D A47602 library	PAIRED	GENOMIC	WGS	RANDOM	524	A47602	SRX1013014	"WGS analysis of normal sample TARGET-52-PAJMBW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJMBW-10A-01D A47602 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47602_2_lanes_dupsFlagged.bam	SRR2001406	@dbgap@:reads/SRP012005/SRS924781/SRX1013014/SRR2001406/SRR2001406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMBW-10A-01D.fusion.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-10A-01D	DNA	EFO	SRS924781	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-10A-01D A47602 library	PAIRED	GENOMIC	WGS	RANDOM	524	A47602	SRX1013014	"WGS analysis of normal sample TARGET-52-PAJMBW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJMBW-10A-01D A47602 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47602_2_lanes_dupsFlagged.bam	SRR2001406	@dbgap@:reads/SRP012005/SRS924781/SRX1013014/SRR2001406/SRR2001406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMBW-10A-01D.indel.vcf	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-10A-01D	DNA	EFO	SRS924781	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-10A-01D A47602 library	PAIRED	GENOMIC	WGS	RANDOM	524	A47602	SRX1013014	"WGS analysis of normal sample TARGET-52-PAJMBW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJMBW-10A-01D A47602 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47602_2_lanes_dupsFlagged.bam	SRR2001406	@dbgap@:reads/SRP012005/SRS924781/SRX1013014/SRR2001406/SRR2001406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJMBW-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-10A-01D	DNA	EFO	SRS924781	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-10A-01D A47602 library	PAIRED	GENOMIC	WGS	RANDOM	524	A47602	SRX1013014	"WGS analysis of normal sample TARGET-52-PAJMBW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-15	TARGET-52-PAJMBW-10A-01D A47602 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47602_2_lanes_dupsFlagged.bam	SRR2001406	@dbgap@:reads/SRP012005/SRS924781/SRX1013014/SRR2001406/SRR2001406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJMBW-01A-01D_TARGET-52-PAJMBW-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01D	DNA	EFO	SRS605054	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01D A22739 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22739	SRX539973	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-01A-01D A22739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22739_3_lanes_dupsFlagged.bam	SRR1283063	@dbgap@:reads/SRP012005/SRS605054/SRX539973/SRR1283063/SRR1283063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMRB-01A-01D.fusion.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01D	DNA	EFO	SRS605054	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01D A22739 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22739	SRX539973	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-01A-01D A22739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22739_3_lanes_dupsFlagged.bam	SRR1283063	@dbgap@:reads/SRP012005/SRS605054/SRX539973/SRR1283063/SRR1283063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMRB-01A-01D.indel.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01D	DNA	EFO	SRS605054	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01D A22739 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22739	SRX539973	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-01A-01D A22739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22739_3_lanes_dupsFlagged.bam	SRR1283063	@dbgap@:reads/SRP012005/SRS605054/SRX539973/SRR1283063/SRR1283063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJMRB-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01D	DNA	EFO	SRS605054	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01D A22739 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22739	SRX539973	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-01A-01D A22739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22739_3_lanes_dupsFlagged.bam	SRR1283063	@dbgap@:reads/SRP012005/SRS605054/SRX539973/SRR1283063/SRR1283063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJMRB-01A-01D_TARGET-52-PAJMRB-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-11A-01D	DNA	EFO	SRS605055	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-11A-01D A22740 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22740	SRX539974	"WGS analysis of normal sample TARGET-52-PAJMRB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-11A-01D A22740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22740_3_lanes_dupsFlagged.bam	SRR1283068	@dbgap@:reads/SRP012005/SRS605055/SRX539974/SRR1283068/SRR1283068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMRB-11A-01D.fusion.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-11A-01D	DNA	EFO	SRS605055	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-11A-01D A22740 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22740	SRX539974	"WGS analysis of normal sample TARGET-52-PAJMRB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-11A-01D A22740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22740_3_lanes_dupsFlagged.bam	SRR1283068	@dbgap@:reads/SRP012005/SRS605055/SRX539974/SRR1283068/SRR1283068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJMRB-11A-01D.indel.vcf	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-11A-01D	DNA	EFO	SRS605055	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-11A-01D A22740 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22740	SRX539974	"WGS analysis of normal sample TARGET-52-PAJMRB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-11A-01D A22740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22740_3_lanes_dupsFlagged.bam	SRR1283068	@dbgap@:reads/SRP012005/SRS605055/SRX539974/SRR1283068/SRR1283068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJMRB-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-11A-01D	DNA	EFO	SRS605055	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-11A-01D A22740 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22740	SRX539974	"WGS analysis of normal sample TARGET-52-PAJMRB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJMRB-11A-01D A22740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22740_3_lanes_dupsFlagged.bam	SRR1283068	@dbgap@:reads/SRP012005/SRS605055/SRX539974/SRR1283068/SRR1283068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJMRB-01A-01D_TARGET-52-PAJMRB-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01D	DNA	EFO	SRS605065	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01D A22741 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22741	SRX540003	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-01A-01D A22741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22741_3_lanes_dupsFlagged.bam	SRR1283054	@dbgap@:reads/SRP012005/SRS605065/SRX540003/SRR1283054/SRR1283054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNER-01A-01D.fusion.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01D	DNA	EFO	SRS605065	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01D A22741 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22741	SRX540003	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-01A-01D A22741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22741_3_lanes_dupsFlagged.bam	SRR1283054	@dbgap@:reads/SRP012005/SRS605065/SRX540003/SRR1283054/SRR1283054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNER-01A-01D.indel.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01D	DNA	EFO	SRS605065	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01D A22741 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22741	SRX540003	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-01A-01D A22741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22741_3_lanes_dupsFlagged.bam	SRR1283054	@dbgap@:reads/SRP012005/SRS605065/SRX540003/SRR1283054/SRR1283054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNER-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01D	DNA	EFO	SRS605065	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01D A22741 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22741	SRX540003	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-01A-01D A22741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22741_3_lanes_dupsFlagged.bam	SRR1283054	@dbgap@:reads/SRP012005/SRS605065/SRX540003/SRR1283054/SRR1283054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNER-01A-01D_TARGET-52-PAJNER-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-11A-01D	DNA	EFO	SRS605063	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-11A-01D A22742 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22742	SRX539999	"WGS analysis of normal sample TARGET-52-PAJNER-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-11A-01D A22742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22742_3_lanes_dupsFlagged.bam	SRR1283062	@dbgap@:reads/SRP012005/SRS605063/SRX539999/SRR1283062/SRR1283062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNER-11A-01D.fusion.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-11A-01D	DNA	EFO	SRS605063	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-11A-01D A22742 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22742	SRX539999	"WGS analysis of normal sample TARGET-52-PAJNER-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-11A-01D A22742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22742_3_lanes_dupsFlagged.bam	SRR1283062	@dbgap@:reads/SRP012005/SRS605063/SRX539999/SRR1283062/SRR1283062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNER-11A-01D.indel.vcf	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-11A-01D	DNA	EFO	SRS605063	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-11A-01D A22742 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22742	SRX539999	"WGS analysis of normal sample TARGET-52-PAJNER-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-11A-01D A22742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22742_3_lanes_dupsFlagged.bam	SRR1283062	@dbgap@:reads/SRP012005/SRS605063/SRX539999/SRR1283062/SRR1283062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNER-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-11A-01D	DNA	EFO	SRS605063	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-11A-01D A22742 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22742	SRX539999	"WGS analysis of normal sample TARGET-52-PAJNER-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNER-11A-01D A22742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22742_3_lanes_dupsFlagged.bam	SRR1283062	@dbgap@:reads/SRP012005/SRS605063/SRX539999/SRR1283062/SRR1283062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNER-01A-01D_TARGET-52-PAJNER-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01D	DNA	EFO	SRS605057	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01D A22743 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22743	SRX539979	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-01A-01D A22743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22743_3_lanes_dupsFlagged.bam	SRR1283061	@dbgap@:reads/SRP012005/SRS605057/SRX539979/SRR1283061/SRR1283061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFP-01A-01D.fusion.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01D	DNA	EFO	SRS605057	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01D A22743 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22743	SRX539979	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-01A-01D A22743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22743_3_lanes_dupsFlagged.bam	SRR1283061	@dbgap@:reads/SRP012005/SRS605057/SRX539979/SRR1283061/SRR1283061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFP-01A-01D.indel.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01D	DNA	EFO	SRS605057	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01D A22743 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22743	SRX539979	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-01A-01D A22743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22743_3_lanes_dupsFlagged.bam	SRR1283061	@dbgap@:reads/SRP012005/SRS605057/SRX539979/SRR1283061/SRR1283061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNFP-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01D	DNA	EFO	SRS605057	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01D A22743 library	PAIRED	GENOMIC	WGS	RANDOM	342	A22743	SRX539979	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-01A-01D A22743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22743_3_lanes_dupsFlagged.bam	SRR1283061	@dbgap@:reads/SRP012005/SRS605057/SRX539979/SRR1283061/SRR1283061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNFP-01A-01D_TARGET-52-PAJNFP-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-11A-01D	DNA	EFO	SRS605056	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-11A-01D A22744 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22744	SRX539975	"WGS analysis of normal sample TARGET-52-PAJNFP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-11A-01D A22744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22744_3_lanes_dupsFlagged.bam	SRR1283067	@dbgap@:reads/SRP012005/SRS605056/SRX539975/SRR1283067/SRR1283067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFP-11A-01D.fusion.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-11A-01D	DNA	EFO	SRS605056	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-11A-01D A22744 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22744	SRX539975	"WGS analysis of normal sample TARGET-52-PAJNFP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-11A-01D A22744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22744_3_lanes_dupsFlagged.bam	SRR1283067	@dbgap@:reads/SRP012005/SRS605056/SRX539975/SRR1283067/SRR1283067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFP-11A-01D.indel.vcf	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-11A-01D	DNA	EFO	SRS605056	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-11A-01D A22744 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22744	SRX539975	"WGS analysis of normal sample TARGET-52-PAJNFP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-11A-01D A22744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22744_3_lanes_dupsFlagged.bam	SRR1283067	@dbgap@:reads/SRP012005/SRS605056/SRX539975/SRR1283067/SRR1283067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNFP-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-11A-01D	DNA	EFO	SRS605056	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-11A-01D A22744 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22744	SRX539975	"WGS analysis of normal sample TARGET-52-PAJNFP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PAJNFP-11A-01D A22744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22744_3_lanes_dupsFlagged.bam	SRR1283067	@dbgap@:reads/SRP012005/SRS605056/SRX539975/SRR1283067/SRR1283067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNFP-01A-01D_TARGET-52-PAJNFP-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01D	DNA	EFO	SRS605061	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01D A22745 library	PAIRED	GENOMIC	WGS	RANDOM	385	A22745	SRX539990	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAJNFZ-01A-01D A22745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22745_3_lanes_dupsFlagged.bam	SRR1283039	@dbgap@:reads/SRP012005/SRS605061/SRX539990/SRR1283039/SRR1283039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFZ-01A-01D.fusion.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01D	DNA	EFO	SRS605061	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01D A22745 library	PAIRED	GENOMIC	WGS	RANDOM	385	A22745	SRX539990	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAJNFZ-01A-01D A22745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22745_3_lanes_dupsFlagged.bam	SRR1283039	@dbgap@:reads/SRP012005/SRS605061/SRX539990/SRR1283039/SRR1283039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFZ-01A-01D.indel.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01D	DNA	EFO	SRS605061	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01D A22745 library	PAIRED	GENOMIC	WGS	RANDOM	385	A22745	SRX539990	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAJNFZ-01A-01D A22745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22745_3_lanes_dupsFlagged.bam	SRR1283039	@dbgap@:reads/SRP012005/SRS605061/SRX539990/SRR1283039/SRR1283039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNFZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01D	DNA	EFO	SRS605061	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01D A22745 library	PAIRED	GENOMIC	WGS	RANDOM	385	A22745	SRX539990	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAJNFZ-01A-01D A22745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22745_3_lanes_dupsFlagged.bam	SRR1283039	@dbgap@:reads/SRP012005/SRS605061/SRX539990/SRR1283039/SRR1283039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNFZ-01A-01D_TARGET-52-PAJNFZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-10A-01D	DNA	EFO	SRS605059	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-10A-01D A22746 library	PAIRED	GENOMIC	WGS	RANDOM	289	A22746	SRX539982	"WGS analysis of normal sample TARGET-52-PAJNFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-52-PAJNFZ-10A-01D A22746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22746_4_lanes_dupsFlagged.bam	SRR1283042	@dbgap@:reads/SRP012005/SRS605059/SRX539982/SRR1283042/SRR1283042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFZ-10A-01D.fusion.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-10A-01D	DNA	EFO	SRS605059	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-10A-01D A22746 library	PAIRED	GENOMIC	WGS	RANDOM	289	A22746	SRX539982	"WGS analysis of normal sample TARGET-52-PAJNFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-52-PAJNFZ-10A-01D A22746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22746_4_lanes_dupsFlagged.bam	SRR1283042	@dbgap@:reads/SRP012005/SRS605059/SRX539982/SRR1283042/SRR1283042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJNFZ-10A-01D.indel.vcf	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-10A-01D	DNA	EFO	SRS605059	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-10A-01D A22746 library	PAIRED	GENOMIC	WGS	RANDOM	289	A22746	SRX539982	"WGS analysis of normal sample TARGET-52-PAJNFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-52-PAJNFZ-10A-01D A22746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22746_4_lanes_dupsFlagged.bam	SRR1283042	@dbgap@:reads/SRP012005/SRS605059/SRX539982/SRR1283042/SRR1283042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJNFZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-10A-01D	DNA	EFO	SRS605059	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-10A-01D A22746 library	PAIRED	GENOMIC	WGS	RANDOM	289	A22746	SRX539982	"WGS analysis of normal sample TARGET-52-PAJNFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2013-02-05	TARGET-52-PAJNFZ-10A-01D A22746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22746_4_lanes_dupsFlagged.bam	SRR1283042	@dbgap@:reads/SRP012005/SRS605059/SRX539982/SRR1283042/SRR1283042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAJNFZ-01A-01D_TARGET-52-PAJNFZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01D	DNA	EFO	SRS924761	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01D A47569 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47569	SRX1012961	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAJPHJ-01A-01D A47569 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47569_2_lanes_dupsFlagged.bam	SRR2001375	@dbgap@:reads/SRP012005/SRS924761/SRX1012961/SRR2001375/SRR2001375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJPHJ-01A-01D.fusion.vcf	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01D	DNA	EFO	SRS924761	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01D A47569 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47569	SRX1012961	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAJPHJ-01A-01D A47569 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47569_2_lanes_dupsFlagged.bam	SRR2001375	@dbgap@:reads/SRP012005/SRS924761/SRX1012961/SRR2001375/SRR2001375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAJPHJ-01A-01D.indel.vcf	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01D	DNA	EFO	SRS924761	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01D A47569 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47569	SRX1012961	"WGS analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAJPHJ-01A-01D A47569 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47569_2_lanes_dupsFlagged.bam	SRR2001375	@dbgap@:reads/SRP012005/SRS924761/SRX1012961/SRR2001375/SRR2001375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAJPHJ-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01D	DNA	EFO	SRS605064	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01D A22747 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22747	SRX540002	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-01A-01D A22747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22747_3_lanes_dupsFlagged.bam	SRR1283053	@dbgap@:reads/SRP012005/SRS605064/SRX540002/SRR1283053/SRR1283053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKHTL-01A-01D.fusion.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01D	DNA	EFO	SRS605064	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01D A22747 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22747	SRX540002	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-01A-01D A22747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22747_3_lanes_dupsFlagged.bam	SRR1283053	@dbgap@:reads/SRP012005/SRS605064/SRX540002/SRR1283053/SRR1283053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKHTL-01A-01D.indel.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01D	DNA	EFO	SRS605064	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01D A22747 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22747	SRX540002	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-01A-01D A22747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22747_3_lanes_dupsFlagged.bam	SRR1283053	@dbgap@:reads/SRP012005/SRS605064/SRX540002/SRR1283053/SRR1283053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKHTL-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01D	DNA	EFO	SRS605064	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01D A22747 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22747	SRX540002	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-01A-01D A22747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22747_3_lanes_dupsFlagged.bam	SRR1283053	@dbgap@:reads/SRP012005/SRS605064/SRX540002/SRR1283053/SRR1283053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKHTL-01A-01D_TARGET-52-PAKHTL-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-11A-01D	DNA	EFO	SRS605543	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-11A-01D A22748 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22748	SRX540523	"WGS analysis of normal sample TARGET-52-PAKHTL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-11A-01D A22748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22748_3_lanes_dupsFlagged.bam	SRR1283686	@dbgap@:reads/SRP012005/SRS605543/SRX540523/SRR1283686/SRR1283686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKHTL-11A-01D.fusion.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-11A-01D	DNA	EFO	SRS605543	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-11A-01D A22748 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22748	SRX540523	"WGS analysis of normal sample TARGET-52-PAKHTL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-11A-01D A22748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22748_3_lanes_dupsFlagged.bam	SRR1283686	@dbgap@:reads/SRP012005/SRS605543/SRX540523/SRR1283686/SRR1283686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKHTL-11A-01D.indel.vcf	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-11A-01D	DNA	EFO	SRS605543	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-11A-01D A22748 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22748	SRX540523	"WGS analysis of normal sample TARGET-52-PAKHTL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-11A-01D A22748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22748_3_lanes_dupsFlagged.bam	SRR1283686	@dbgap@:reads/SRP012005/SRS605543/SRX540523/SRR1283686/SRR1283686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKHTL-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-11A-01D	DNA	EFO	SRS605543	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-11A-01D A22748 library	PAIRED	GENOMIC	WGS	RANDOM	326	A22748	SRX540523	"WGS analysis of normal sample TARGET-52-PAKHTL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAKHTL-11A-01D A22748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22748_3_lanes_dupsFlagged.bam	SRR1283686	@dbgap@:reads/SRP012005/SRS605543/SRX540523/SRR1283686/SRR1283686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKHTL-01A-01D_TARGET-52-PAKHTL-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01D	DNA	EFO	SRS924787	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01D A47585 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47585	SRX1013008	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAKLYZ-01A-01D A47585 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47585_2_lanes_dupsFlagged.bam	SRR2001408	@dbgap@:reads/SRP012005/SRS924787/SRX1013008/SRR2001408/SRR2001408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKLYZ-01A-01D.fusion.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01D	DNA	EFO	SRS924787	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01D A47585 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47585	SRX1013008	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAKLYZ-01A-01D A47585 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47585_2_lanes_dupsFlagged.bam	SRR2001408	@dbgap@:reads/SRP012005/SRS924787/SRX1013008/SRR2001408/SRR2001408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKLYZ-01A-01D.indel.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01D	DNA	EFO	SRS924787	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01D A47585 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47585	SRX1013008	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAKLYZ-01A-01D A47585 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47585_2_lanes_dupsFlagged.bam	SRR2001408	@dbgap@:reads/SRP012005/SRS924787/SRX1013008/SRR2001408/SRR2001408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKLYZ-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01D	DNA	EFO	SRS924787	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01D A47585 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47585	SRX1013008	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAKLYZ-01A-01D A47585 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47585_2_lanes_dupsFlagged.bam	SRR2001408	@dbgap@:reads/SRP012005/SRS924787/SRX1013008/SRR2001408/SRR2001408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKLYZ-01A-01D_TARGET-52-PAKLYZ-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-10A-01D	DNA	EFO	SRS931585	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-10A-01D A47603 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47603	SRX1021617	"WGS analysis of normal sample TARGET-52-PAKLYZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKLYZ-10A-01D A47603 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A49990_A47603_2_lanes_dupsFlagged.bam	SRR2013816	@dbgap@:reads/SRP012005/SRS931585/SRX1021617/SRR2013816/SRR2013816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKLYZ-10A-01D.fusion.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-10A-01D	DNA	EFO	SRS931585	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-10A-01D A47603 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47603	SRX1021617	"WGS analysis of normal sample TARGET-52-PAKLYZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKLYZ-10A-01D A47603 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A49990_A47603_2_lanes_dupsFlagged.bam	SRR2013816	@dbgap@:reads/SRP012005/SRS931585/SRX1021617/SRR2013816/SRR2013816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKLYZ-10A-01D.indel.vcf	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-10A-01D	DNA	EFO	SRS931585	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-10A-01D A47603 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47603	SRX1021617	"WGS analysis of normal sample TARGET-52-PAKLYZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKLYZ-10A-01D A47603 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A49990_A47603_2_lanes_dupsFlagged.bam	SRR2013816	@dbgap@:reads/SRP012005/SRS931585/SRX1021617/SRR2013816/SRR2013816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKLYZ-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-10A-01D	DNA	EFO	SRS931585	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-10A-01D A47603 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47603	SRX1021617	"WGS analysis of normal sample TARGET-52-PAKLYZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKLYZ-10A-01D A47603 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A49990_A47603_2_lanes_dupsFlagged.bam	SRR2013816	@dbgap@:reads/SRP012005/SRS931585/SRX1021617/SRR2013816/SRR2013816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKLYZ-01A-01D_TARGET-52-PAKLYZ-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01D	DNA	EFO	SRS924755	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01D A47571 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47571	SRX1012969	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAKPEW-01A-01D A47571 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47571_2_lanes_dupsFlagged.bam	SRR2001378	@dbgap@:reads/SRP012005/SRS924755/SRX1012969/SRR2001378/SRR2001378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKPEW-01A-01D.fusion.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01D	DNA	EFO	SRS924755	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01D A47571 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47571	SRX1012969	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAKPEW-01A-01D A47571 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47571_2_lanes_dupsFlagged.bam	SRR2001378	@dbgap@:reads/SRP012005/SRS924755/SRX1012969/SRR2001378/SRR2001378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKPEW-01A-01D.indel.vcf	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01D	DNA	EFO	SRS924755	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01D A47571 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47571	SRX1012969	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAKPEW-01A-01D A47571 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47571_2_lanes_dupsFlagged.bam	SRR2001378	@dbgap@:reads/SRP012005/SRS924755/SRX1012969/SRR2001378/SRR2001378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKPEW-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01D	DNA	EFO	SRS924789	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01D A47586 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47586	SRX1013006	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-01A-01D A47586 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47586_2_lanes_dupsFlagged.bam	SRR2001416	@dbgap@:reads/SRP012005/SRS924789/SRX1013006/SRR2001416/SRR2001416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKTCT-01A-01D.fusion.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01D	DNA	EFO	SRS924789	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01D A47586 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47586	SRX1013006	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-01A-01D A47586 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47586_2_lanes_dupsFlagged.bam	SRR2001416	@dbgap@:reads/SRP012005/SRS924789/SRX1013006/SRR2001416/SRR2001416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKTCT-01A-01D.indel.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01D	DNA	EFO	SRS924789	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01D A47586 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47586	SRX1013006	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-01A-01D A47586 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47586_2_lanes_dupsFlagged.bam	SRR2001416	@dbgap@:reads/SRP012005/SRS924789/SRX1013006/SRR2001416/SRR2001416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKTCT-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01D	DNA	EFO	SRS924789	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01D A47586 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47586	SRX1013006	"WGS analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-01A-01D A47586 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47586_2_lanes_dupsFlagged.bam	SRR2001416	@dbgap@:reads/SRP012005/SRS924789/SRX1013006/SRR2001416/SRR2001416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKTCT-01A-01D_TARGET-52-PAKTCT-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-11A-01D	DNA	EFO	SRS924790	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-11A-01D A47604 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47604	SRX1013005	"WGS analysis of normal sample TARGET-52-PAKTCT-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-11A-01D A47604 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47604_2_lanes_dupsFlagged.bam	SRR2001418	@dbgap@:reads/SRP012005/SRS924790/SRX1013005/SRR2001418/SRR2001418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKTCT-11A-01D.fusion.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-11A-01D	DNA	EFO	SRS924790	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-11A-01D A47604 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47604	SRX1013005	"WGS analysis of normal sample TARGET-52-PAKTCT-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-11A-01D A47604 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47604_2_lanes_dupsFlagged.bam	SRR2001418	@dbgap@:reads/SRP012005/SRS924790/SRX1013005/SRR2001418/SRR2001418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAKTCT-11A-01D.indel.vcf	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-11A-01D	DNA	EFO	SRS924790	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-11A-01D A47604 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47604	SRX1013005	"WGS analysis of normal sample TARGET-52-PAKTCT-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-11A-01D A47604 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47604_2_lanes_dupsFlagged.bam	SRR2001418	@dbgap@:reads/SRP012005/SRS924790/SRX1013005/SRR2001418/SRR2001418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAKTCT-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-11A-01D	DNA	EFO	SRS924790	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-11A-01D A47604 library	PAIRED	GENOMIC	WGS	RANDOM	501	A47604	SRX1013005	"WGS analysis of normal sample TARGET-52-PAKTCT-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-23	TARGET-52-PAKTCT-11A-01D A47604 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47604_2_lanes_dupsFlagged.bam	SRR2001418	@dbgap@:reads/SRP012005/SRS924790/SRX1013005/SRR2001418/SRR2001418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAKTCT-01A-01D_TARGET-52-PAKTCT-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01D	DNA	EFO	SRS301346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01D A22715 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22715	SRX535858	"WGS analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-01A-01D A22715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22715_3_lanes_dupsFlagged.bam	SRR1276170	@dbgap@:reads/SRP012005/SRS301346/SRX535858/SRR1276170/SRR1276170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARECB-01A-01D.fusion.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01D	DNA	EFO	SRS301346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01D A22715 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22715	SRX535858	"WGS analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-01A-01D A22715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22715_3_lanes_dupsFlagged.bam	SRR1276170	@dbgap@:reads/SRP012005/SRS301346/SRX535858/SRR1276170/SRR1276170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARECB-01A-01D.indel.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01D	DNA	EFO	SRS301346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01D A22715 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22715	SRX535858	"WGS analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-01A-01D A22715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22715_3_lanes_dupsFlagged.bam	SRR1276170	@dbgap@:reads/SRP012005/SRS301346/SRX535858/SRR1276170/SRR1276170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARECB-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01D	DNA	EFO	SRS301346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01D A22715 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22715	SRX535858	"WGS analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-01A-01D A22715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22715_3_lanes_dupsFlagged.bam	SRR1276170	@dbgap@:reads/SRP012005/SRS301346/SRX535858/SRR1276170/SRR1276170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARECB-01A-01D_TARGET-52-PARECB-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-11A-01D	DNA	EFO	SRS301347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-11A-01D A22716 library	PAIRED	GENOMIC	WGS	RANDOM	394	A22716	SRX539994	"WGS analysis of normal sample TARGET-52-PARECB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-11A-01D A22716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22716_3_lanes_dupsFlagged.bam	SRR1283052	@dbgap@:reads/SRP012005/SRS301347/SRX539994/SRR1283052/SRR1283052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARECB-11A-01D.fusion.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-11A-01D	DNA	EFO	SRS301347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-11A-01D A22716 library	PAIRED	GENOMIC	WGS	RANDOM	394	A22716	SRX539994	"WGS analysis of normal sample TARGET-52-PARECB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-11A-01D A22716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22716_3_lanes_dupsFlagged.bam	SRR1283052	@dbgap@:reads/SRP012005/SRS301347/SRX539994/SRR1283052/SRR1283052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARECB-11A-01D.indel.vcf	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-11A-01D	DNA	EFO	SRS301347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-11A-01D A22716 library	PAIRED	GENOMIC	WGS	RANDOM	394	A22716	SRX539994	"WGS analysis of normal sample TARGET-52-PARECB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-11A-01D A22716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22716_3_lanes_dupsFlagged.bam	SRR1283052	@dbgap@:reads/SRP012005/SRS301347/SRX539994/SRR1283052/SRR1283052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARECB-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-11A-01D	DNA	EFO	SRS301347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-11A-01D A22716 library	PAIRED	GENOMIC	WGS	RANDOM	394	A22716	SRX539994	"WGS analysis of normal sample TARGET-52-PARECB-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARECB-11A-01D A22716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22716_3_lanes_dupsFlagged.bam	SRR1283052	@dbgap@:reads/SRP012005/SRS301347/SRX539994/SRR1283052/SRR1283052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARECB-01A-01D_TARGET-52-PARECB-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02D	DNA	EFO	SRS924791	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02D A47587 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47587	SRX1013004	"WGS analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAREWI-01A-02D A47587 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47587_2_lanes_dupsFlagged.bam	SRR2001420	@dbgap@:reads/SRP012005/SRS924791/SRX1013004/SRR2001420/SRR2001420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAREWI-01A-02D.fusion.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02D	DNA	EFO	SRS924791	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02D A47587 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47587	SRX1013004	"WGS analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAREWI-01A-02D A47587 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47587_2_lanes_dupsFlagged.bam	SRR2001420	@dbgap@:reads/SRP012005/SRS924791/SRX1013004/SRR2001420/SRR2001420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAREWI-01A-02D.indel.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02D	DNA	EFO	SRS924791	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02D A47587 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47587	SRX1013004	"WGS analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAREWI-01A-02D A47587 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47587_2_lanes_dupsFlagged.bam	SRR2001420	@dbgap@:reads/SRP012005/SRS924791/SRX1013004/SRR2001420/SRR2001420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAREWI-01A-02D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02D	DNA	EFO	SRS924791	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02D A47587 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47587	SRX1013004	"WGS analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAREWI-01A-02D A47587 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47587_2_lanes_dupsFlagged.bam	SRR2001420	@dbgap@:reads/SRP012005/SRS924791/SRX1013004/SRR2001420/SRR2001420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAREWI-01A-02D_TARGET-52-PAREWI-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-11A-01D	DNA	EFO	SRS924782	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-11A-01D A47605 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47605	SRX1013013	"WGS analysis of normal sample TARGET-52-PAREWI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAREWI-11A-01D A47605 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47605_2_lanes_dupsFlagged.bam	SRR2001415	@dbgap@:reads/SRP012005/SRS924782/SRX1013013/SRR2001415/SRR2001415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAREWI-11A-01D.fusion.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-11A-01D	DNA	EFO	SRS924782	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-11A-01D A47605 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47605	SRX1013013	"WGS analysis of normal sample TARGET-52-PAREWI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAREWI-11A-01D A47605 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47605_2_lanes_dupsFlagged.bam	SRR2001415	@dbgap@:reads/SRP012005/SRS924782/SRX1013013/SRR2001415/SRR2001415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAREWI-11A-01D.indel.vcf	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-11A-01D	DNA	EFO	SRS924782	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-11A-01D A47605 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47605	SRX1013013	"WGS analysis of normal sample TARGET-52-PAREWI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAREWI-11A-01D A47605 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47605_2_lanes_dupsFlagged.bam	SRR2001415	@dbgap@:reads/SRP012005/SRS924782/SRX1013013/SRR2001415/SRR2001415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAREWI-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-11A-01D	DNA	EFO	SRS924782	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-11A-01D A47605 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47605	SRX1013013	"WGS analysis of normal sample TARGET-52-PAREWI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAREWI-11A-01D A47605 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47605_2_lanes_dupsFlagged.bam	SRR2001415	@dbgap@:reads/SRP012005/SRS924782/SRX1013013/SRR2001415/SRR2001415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAREWI-01A-02D_TARGET-52-PAREWI-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01D	DNA	EFO	SRS301348	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01D A22689 library	PAIRED	GENOMIC	WGS	RANDOM	419	A22689	SRX535840	"WGS analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-01A-01D A22689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22689_3_lanes_dupsFlagged.bam	SRR1276156	@dbgap@:reads/SRP012005/SRS301348/SRX535840/SRR1276156/SRR1276156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARGRN-01A-01D.fusion.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01D	DNA	EFO	SRS301348	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01D A22689 library	PAIRED	GENOMIC	WGS	RANDOM	419	A22689	SRX535840	"WGS analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-01A-01D A22689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22689_3_lanes_dupsFlagged.bam	SRR1276156	@dbgap@:reads/SRP012005/SRS301348/SRX535840/SRR1276156/SRR1276156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARGRN-01A-01D.indel.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01D	DNA	EFO	SRS301348	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01D A22689 library	PAIRED	GENOMIC	WGS	RANDOM	419	A22689	SRX535840	"WGS analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-01A-01D A22689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22689_3_lanes_dupsFlagged.bam	SRR1276156	@dbgap@:reads/SRP012005/SRS301348/SRX535840/SRR1276156/SRR1276156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARGRN-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01D	DNA	EFO	SRS301348	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01D A22689 library	PAIRED	GENOMIC	WGS	RANDOM	419	A22689	SRX535840	"WGS analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-01A-01D A22689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22689_3_lanes_dupsFlagged.bam	SRR1276156	@dbgap@:reads/SRP012005/SRS301348/SRX535840/SRR1276156/SRR1276156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARGRN-01A-01D_TARGET-52-PARGRN-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-10A-01D	DNA	EFO	SRS301349	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-10A-01D A22690 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22690	SRX535856	"WGS analysis of normal sample TARGET-52-PARGRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-10A-01D A22690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22690_3_lanes_dupsFlagged.bam	SRR1276146	@dbgap@:reads/SRP012005/SRS301349/SRX535856/SRR1276146/SRR1276146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARGRN-10A-01D.fusion.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-10A-01D	DNA	EFO	SRS301349	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-10A-01D A22690 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22690	SRX535856	"WGS analysis of normal sample TARGET-52-PARGRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-10A-01D A22690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22690_3_lanes_dupsFlagged.bam	SRR1276146	@dbgap@:reads/SRP012005/SRS301349/SRX535856/SRR1276146/SRR1276146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARGRN-10A-01D.indel.vcf	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-10A-01D	DNA	EFO	SRS301349	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-10A-01D A22690 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22690	SRX535856	"WGS analysis of normal sample TARGET-52-PARGRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-10A-01D A22690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22690_3_lanes_dupsFlagged.bam	SRR1276146	@dbgap@:reads/SRP012005/SRS301349/SRX535856/SRR1276146/SRR1276146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARGRN-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-10A-01D	DNA	EFO	SRS301349	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-10A-01D A22690 library	PAIRED	GENOMIC	WGS	RANDOM	353	A22690	SRX535856	"WGS analysis of normal sample TARGET-52-PARGRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARGRN-10A-01D A22690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22690_3_lanes_dupsFlagged.bam	SRR1276146	@dbgap@:reads/SRP012005/SRS301349/SRX535856/SRR1276146/SRR1276146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARGRN-01A-01D_TARGET-52-PARGRN-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01D	DNA	EFO	SRS301350	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01D A22691 library	PAIRED	GENOMIC	WGS	RANDOM	374	A22691	SRX535850	"WGS analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-01A-01D A22691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22691_3_lanes_dupsFlagged.bam	SRR1276172	@dbgap@:reads/SRP012005/SRS301350/SRX535850/SRR1276172/SRR1276172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARIRN-01A-01D.fusion.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01D	DNA	EFO	SRS301350	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01D A22691 library	PAIRED	GENOMIC	WGS	RANDOM	374	A22691	SRX535850	"WGS analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-01A-01D A22691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22691_3_lanes_dupsFlagged.bam	SRR1276172	@dbgap@:reads/SRP012005/SRS301350/SRX535850/SRR1276172/SRR1276172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARIRN-01A-01D.indel.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01D	DNA	EFO	SRS301350	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01D A22691 library	PAIRED	GENOMIC	WGS	RANDOM	374	A22691	SRX535850	"WGS analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-01A-01D A22691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22691_3_lanes_dupsFlagged.bam	SRR1276172	@dbgap@:reads/SRP012005/SRS301350/SRX535850/SRR1276172/SRR1276172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARIRN-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01D	DNA	EFO	SRS301350	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01D A22691 library	PAIRED	GENOMIC	WGS	RANDOM	374	A22691	SRX535850	"WGS analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-01A-01D A22691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22691_3_lanes_dupsFlagged.bam	SRR1276172	@dbgap@:reads/SRP012005/SRS301350/SRX535850/SRR1276172/SRR1276172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARIRN-01A-01D_TARGET-52-PARIRN-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-10A-01D	DNA	EFO	SRS301351	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-10A-01D A22692 library	PAIRED	GENOMIC	WGS	RANDOM	359	A22692	SRX535852	"WGS analysis of normal sample TARGET-52-PARIRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-10A-01D A22692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22692_3_lanes_dupsFlagged.bam	SRR1276158	@dbgap@:reads/SRP012005/SRS301351/SRX535852/SRR1276158/SRR1276158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARIRN-10A-01D.fusion.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-10A-01D	DNA	EFO	SRS301351	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-10A-01D A22692 library	PAIRED	GENOMIC	WGS	RANDOM	359	A22692	SRX535852	"WGS analysis of normal sample TARGET-52-PARIRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-10A-01D A22692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22692_3_lanes_dupsFlagged.bam	SRR1276158	@dbgap@:reads/SRP012005/SRS301351/SRX535852/SRR1276158/SRR1276158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARIRN-10A-01D.indel.vcf	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-10A-01D	DNA	EFO	SRS301351	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-10A-01D A22692 library	PAIRED	GENOMIC	WGS	RANDOM	359	A22692	SRX535852	"WGS analysis of normal sample TARGET-52-PARIRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-10A-01D A22692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22692_3_lanes_dupsFlagged.bam	SRR1276158	@dbgap@:reads/SRP012005/SRS301351/SRX535852/SRR1276158/SRR1276158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARIRN-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-10A-01D	DNA	EFO	SRS301351	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-10A-01D A22692 library	PAIRED	GENOMIC	WGS	RANDOM	359	A22692	SRX535852	"WGS analysis of normal sample TARGET-52-PARIRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARIRN-10A-01D A22692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22692_3_lanes_dupsFlagged.bam	SRR1276158	@dbgap@:reads/SRP012005/SRS301351/SRX535852/SRR1276158/SRR1276158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARIRN-01A-01D_TARGET-52-PARIRN-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01D	DNA	EFO	SRS924756	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01D A47572 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47572	SRX1012966	"WGS analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARKKN-01A-01D A47572 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47572_2_lanes_dupsFlagged.bam	SRR2001368	@dbgap@:reads/SRP012005/SRS924756/SRX1012966/SRR2001368/SRR2001368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARKKN-01A-01D.fusion.vcf	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01D	DNA	EFO	SRS924756	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01D A47572 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47572	SRX1012966	"WGS analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARKKN-01A-01D A47572 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47572_2_lanes_dupsFlagged.bam	SRR2001368	@dbgap@:reads/SRP012005/SRS924756/SRX1012966/SRR2001368/SRR2001368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARKKN-01A-01D.indel.vcf	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01D	DNA	EFO	SRS924756	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01D A47572 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47572	SRX1012966	"WGS analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARKKN-01A-01D A47572 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47572_2_lanes_dupsFlagged.bam	SRR2001368	@dbgap@:reads/SRP012005/SRS924756/SRX1012966/SRR2001368/SRR2001368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARKKN-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01D	DNA	EFO	SRS301352	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01D A22717 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22717	SRX539992	"WGS analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-01A-01D A22717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22717_3_lanes_dupsFlagged.bam	SRR1283040	@dbgap@:reads/SRP012005/SRS301352/SRX539992/SRR1283040/SRR1283040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARPFY-01A-01D.fusion.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01D	DNA	EFO	SRS301352	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01D A22717 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22717	SRX539992	"WGS analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-01A-01D A22717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22717_3_lanes_dupsFlagged.bam	SRR1283040	@dbgap@:reads/SRP012005/SRS301352/SRX539992/SRR1283040/SRR1283040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARPFY-01A-01D.indel.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01D	DNA	EFO	SRS301352	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01D A22717 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22717	SRX539992	"WGS analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-01A-01D A22717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22717_3_lanes_dupsFlagged.bam	SRR1283040	@dbgap@:reads/SRP012005/SRS301352/SRX539992/SRR1283040/SRR1283040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARPFY-01A-01D.format_1.2.dna_tumor.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01D	DNA	EFO	SRS301352	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01D A22717 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22717	SRX539992	"WGS analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-01A-01D A22717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22717_3_lanes_dupsFlagged.bam	SRR1283040	@dbgap@:reads/SRP012005/SRS301352/SRX539992/SRR1283040/SRR1283040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARPFY-01A-01D_TARGET-52-PARPFY-11A-01D.format_1.2.somatic.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01D	DNA	EFO	SRS301353	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01D A22718 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22718	SRX539976	"WGS analysis of normal sample TARGET-52-PARPFY-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-11A-01D A22718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22718_3_lanes_dupsFlagged.bam	SRR1283057	@dbgap@:reads/SRP012005/SRS301353/SRX539976/SRR1283057/SRR1283057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARPFY-11A-01D.fusion.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01D	DNA	EFO	SRS301353	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01D A22718 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22718	SRX539976	"WGS analysis of normal sample TARGET-52-PARPFY-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-11A-01D A22718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22718_3_lanes_dupsFlagged.bam	SRR1283057	@dbgap@:reads/SRP012005/SRS301353/SRX539976/SRR1283057/SRR1283057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARPFY-11A-01D.indel.vcf	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01D	DNA	EFO	SRS301353	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01D A22718 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22718	SRX539976	"WGS analysis of normal sample TARGET-52-PARPFY-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-11A-01D A22718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22718_3_lanes_dupsFlagged.bam	SRR1283057	@dbgap@:reads/SRP012005/SRS301353/SRX539976/SRR1283057/SRR1283057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARPFY-11A-01D.format_1.2.dna_normal.maf.txt	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-11A-01D	DNA	EFO	SRS301353	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-11A-01D A22718 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22718	SRX539976	"WGS analysis of normal sample TARGET-52-PARPFY-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARPFY-11A-01D A22718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22718_3_lanes_dupsFlagged.bam	SRR1283057	@dbgap@:reads/SRP012005/SRS301353/SRX539976/SRR1283057/SRR1283057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARPFY-01A-01D_TARGET-52-PARPFY-11A-01D.format_1.2.somatic.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01D	DNA	EFO	SRS301354	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01D A22719 library	PAIRED	GENOMIC	WGS	RANDOM	357	A22719	SRX539980	"WGS analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-01A-01D A22719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22719_3_lanes_dupsFlagged.bam	SRR1283059	@dbgap@:reads/SRP012005/SRS301354/SRX539980/SRR1283059/SRR1283059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARRCL-01A-01D.fusion.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01D	DNA	EFO	SRS301354	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01D A22719 library	PAIRED	GENOMIC	WGS	RANDOM	357	A22719	SRX539980	"WGS analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-01A-01D A22719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22719_3_lanes_dupsFlagged.bam	SRR1283059	@dbgap@:reads/SRP012005/SRS301354/SRX539980/SRR1283059/SRR1283059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARRCL-01A-01D.indel.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01D	DNA	EFO	SRS301354	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01D A22719 library	PAIRED	GENOMIC	WGS	RANDOM	357	A22719	SRX539980	"WGS analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-01A-01D A22719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22719_3_lanes_dupsFlagged.bam	SRR1283059	@dbgap@:reads/SRP012005/SRS301354/SRX539980/SRR1283059/SRR1283059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARRCL-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01D	DNA	EFO	SRS301354	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01D A22719 library	PAIRED	GENOMIC	WGS	RANDOM	357	A22719	SRX539980	"WGS analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-01A-01D A22719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22719_3_lanes_dupsFlagged.bam	SRR1283059	@dbgap@:reads/SRP012005/SRS301354/SRX539980/SRR1283059/SRR1283059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARRCL-01A-01D_TARGET-52-PARRCL-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01D	DNA	EFO	SRS301355	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01D A22720 library	PAIRED	GENOMIC	WGS	RANDOM	368	A22720	SRX539983	"WGS analysis of normal sample TARGET-52-PARRCL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-11A-01D A22720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22720_3_lanes_dupsFlagged.bam	SRR1283060	@dbgap@:reads/SRP012005/SRS301355/SRX539983/SRR1283060/SRR1283060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARRCL-11A-01D.fusion.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01D	DNA	EFO	SRS301355	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01D A22720 library	PAIRED	GENOMIC	WGS	RANDOM	368	A22720	SRX539983	"WGS analysis of normal sample TARGET-52-PARRCL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-11A-01D A22720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22720_3_lanes_dupsFlagged.bam	SRR1283060	@dbgap@:reads/SRP012005/SRS301355/SRX539983/SRR1283060/SRR1283060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARRCL-11A-01D.indel.vcf	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01D	DNA	EFO	SRS301355	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01D A22720 library	PAIRED	GENOMIC	WGS	RANDOM	368	A22720	SRX539983	"WGS analysis of normal sample TARGET-52-PARRCL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-11A-01D A22720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22720_3_lanes_dupsFlagged.bam	SRR1283060	@dbgap@:reads/SRP012005/SRS301355/SRX539983/SRR1283060/SRR1283060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARRCL-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-11A-01D	DNA	EFO	SRS301355	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-11A-01D A22720 library	PAIRED	GENOMIC	WGS	RANDOM	368	A22720	SRX539983	"WGS analysis of normal sample TARGET-52-PARRCL-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARRCL-11A-01D A22720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22720_3_lanes_dupsFlagged.bam	SRR1283060	@dbgap@:reads/SRP012005/SRS301355/SRX539983/SRR1283060/SRR1283060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARRCL-01A-01D_TARGET-52-PARRCL-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01D	DNA	EFO	SRS924749	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01D A47567 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47567	SRX1012974	"WGS analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PARTKH-01A-01D A47567 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47567_2_lanes_dupsFlagged.bam	SRR2001385	@dbgap@:reads/SRP012005/SRS924749/SRX1012974/SRR2001385/SRR2001385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARTKH-01A-01D.fusion.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01D	DNA	EFO	SRS924749	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01D A47567 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47567	SRX1012974	"WGS analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PARTKH-01A-01D A47567 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47567_2_lanes_dupsFlagged.bam	SRR2001385	@dbgap@:reads/SRP012005/SRS924749/SRX1012974/SRR2001385/SRR2001385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARTKH-01A-01D.indel.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01D	DNA	EFO	SRS924749	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01D A47567 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47567	SRX1012974	"WGS analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PARTKH-01A-01D A47567 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47567_2_lanes_dupsFlagged.bam	SRR2001385	@dbgap@:reads/SRP012005/SRS924749/SRX1012974/SRR2001385/SRR2001385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARTKH-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01D	DNA	EFO	SRS924749	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01D A47567 library	PAIRED	GENOMIC	WGS	RANDOM	513	A47567	SRX1012974	"WGS analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PARTKH-01A-01D A47567 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47567_2_lanes_dupsFlagged.bam	SRR2001385	@dbgap@:reads/SRP012005/SRS924749/SRX1012974/SRR2001385/SRR2001385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARTKH-01A-01D_TARGET-52-PARTKH-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-10A-01D	DNA	EFO	SRS924760	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-10A-01D A47597 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47597	SRX1012962	"WGS analysis of normal sample TARGET-52-PARTKH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARTKH-10A-01D A47597 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47597_2_lanes_dupsFlagged.bam	SRR2001370	@dbgap@:reads/SRP012005/SRS924760/SRX1012962/SRR2001370/SRR2001370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARTKH-10A-01D.fusion.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-10A-01D	DNA	EFO	SRS924760	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-10A-01D A47597 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47597	SRX1012962	"WGS analysis of normal sample TARGET-52-PARTKH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARTKH-10A-01D A47597 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47597_2_lanes_dupsFlagged.bam	SRR2001370	@dbgap@:reads/SRP012005/SRS924760/SRX1012962/SRR2001370/SRR2001370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARTKH-10A-01D.indel.vcf	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-10A-01D	DNA	EFO	SRS924760	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-10A-01D A47597 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47597	SRX1012962	"WGS analysis of normal sample TARGET-52-PARTKH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARTKH-10A-01D A47597 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47597_2_lanes_dupsFlagged.bam	SRR2001370	@dbgap@:reads/SRP012005/SRS924760/SRX1012962/SRR2001370/SRR2001370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARTKH-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-10A-01D	DNA	EFO	SRS924760	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-10A-01D A47597 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47597	SRX1012962	"WGS analysis of normal sample TARGET-52-PARTKH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARTKH-10A-01D A47597 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47597_2_lanes_dupsFlagged.bam	SRR2001370	@dbgap@:reads/SRP012005/SRS924760/SRX1012962/SRR2001370/SRR2001370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARTKH-01A-01D_TARGET-52-PARTKH-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01D	DNA	EFO	SRS301356	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01D A22693 library	PAIRED	GENOMIC	WGS	RANDOM	335	A22693	SRX535851	"WGS analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-01A-01D A22693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22693_3_lanes_dupsFlagged.bam	SRR1276155	@dbgap@:reads/SRP012005/SRS301356/SRX535851/SRR1276155/SRR1276155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARUGK-01A-01D.fusion.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01D	DNA	EFO	SRS301356	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01D A22693 library	PAIRED	GENOMIC	WGS	RANDOM	335	A22693	SRX535851	"WGS analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-01A-01D A22693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22693_3_lanes_dupsFlagged.bam	SRR1276155	@dbgap@:reads/SRP012005/SRS301356/SRX535851/SRR1276155/SRR1276155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARUGK-01A-01D.indel.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01D	DNA	EFO	SRS301356	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01D A22693 library	PAIRED	GENOMIC	WGS	RANDOM	335	A22693	SRX535851	"WGS analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-01A-01D A22693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22693_3_lanes_dupsFlagged.bam	SRR1276155	@dbgap@:reads/SRP012005/SRS301356/SRX535851/SRR1276155/SRR1276155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARUGK-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01D	DNA	EFO	SRS301356	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01D A22693 library	PAIRED	GENOMIC	WGS	RANDOM	335	A22693	SRX535851	"WGS analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-01A-01D A22693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22693_3_lanes_dupsFlagged.bam	SRR1276155	@dbgap@:reads/SRP012005/SRS301356/SRX535851/SRR1276155/SRR1276155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARUGK-01A-01D_TARGET-52-PARUGK-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-10A-01D	DNA	EFO	SRS301357	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-10A-01D A22694 library	PAIRED	GENOMIC	WGS	RANDOM	386	A22694	SRX535864	"WGS analysis of normal sample TARGET-52-PARUGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-10A-01D A22694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22694_3_lanes_dupsFlagged.bam	SRR1276149	@dbgap@:reads/SRP012005/SRS301357/SRX535864/SRR1276149/SRR1276149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARUGK-10A-01D.fusion.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-10A-01D	DNA	EFO	SRS301357	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-10A-01D A22694 library	PAIRED	GENOMIC	WGS	RANDOM	386	A22694	SRX535864	"WGS analysis of normal sample TARGET-52-PARUGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-10A-01D A22694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22694_3_lanes_dupsFlagged.bam	SRR1276149	@dbgap@:reads/SRP012005/SRS301357/SRX535864/SRR1276149/SRR1276149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARUGK-10A-01D.indel.vcf	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-10A-01D	DNA	EFO	SRS301357	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-10A-01D A22694 library	PAIRED	GENOMIC	WGS	RANDOM	386	A22694	SRX535864	"WGS analysis of normal sample TARGET-52-PARUGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-10A-01D A22694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22694_3_lanes_dupsFlagged.bam	SRR1276149	@dbgap@:reads/SRP012005/SRS301357/SRX535864/SRR1276149/SRR1276149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARUGK-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-10A-01D	DNA	EFO	SRS301357	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-10A-01D A22694 library	PAIRED	GENOMIC	WGS	RANDOM	386	A22694	SRX535864	"WGS analysis of normal sample TARGET-52-PARUGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PARUGK-10A-01D A22694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22694_3_lanes_dupsFlagged.bam	SRR1276149	@dbgap@:reads/SRP012005/SRS301357/SRX535864/SRR1276149/SRR1276149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARUGK-01A-01D_TARGET-52-PARUGK-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02D	DNA	EFO	SRS605536	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02D A22749 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22749	SRX540513	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-01A-02D A22749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22749_3_lanes_dupsFlagged.bam	SRR1283685	@dbgap@:reads/SRP012005/SRS605536/SRX540513/SRR1283685/SRR1283685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZBI-01A-02D.fusion.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02D	DNA	EFO	SRS605536	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02D A22749 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22749	SRX540513	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-01A-02D A22749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22749_3_lanes_dupsFlagged.bam	SRR1283685	@dbgap@:reads/SRP012005/SRS605536/SRX540513/SRR1283685/SRR1283685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZBI-01A-02D.indel.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02D	DNA	EFO	SRS605536	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02D A22749 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22749	SRX540513	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-01A-02D A22749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22749_3_lanes_dupsFlagged.bam	SRR1283685	@dbgap@:reads/SRP012005/SRS605536/SRX540513/SRR1283685/SRR1283685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARZBI-01A-02D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02D	DNA	EFO	SRS605536	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02D A22749 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22749	SRX540513	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-01A-02D A22749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22749_3_lanes_dupsFlagged.bam	SRR1283685	@dbgap@:reads/SRP012005/SRS605536/SRX540513/SRR1283685/SRR1283685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARZBI-01A-02D_TARGET-52-PARZBI-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01D	DNA	EFO	SRS605537	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01D A22750 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22750	SRX540515	"WGS analysis of normal sample TARGET-52-PARZBI-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-11A-01D A22750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22750_3_lanes_dupsFlagged.bam	SRR1283692	@dbgap@:reads/SRP012005/SRS605537/SRX540515/SRR1283692/SRR1283692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZBI-11A-01D.fusion.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01D	DNA	EFO	SRS605537	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01D A22750 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22750	SRX540515	"WGS analysis of normal sample TARGET-52-PARZBI-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-11A-01D A22750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22750_3_lanes_dupsFlagged.bam	SRR1283692	@dbgap@:reads/SRP012005/SRS605537/SRX540515/SRR1283692/SRR1283692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZBI-11A-01D.indel.vcf	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01D	DNA	EFO	SRS605537	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01D A22750 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22750	SRX540515	"WGS analysis of normal sample TARGET-52-PARZBI-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-11A-01D A22750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22750_3_lanes_dupsFlagged.bam	SRR1283692	@dbgap@:reads/SRP012005/SRS605537/SRX540515/SRR1283692/SRR1283692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARZBI-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-11A-01D	DNA	EFO	SRS605537	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-11A-01D A22750 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22750	SRX540515	"WGS analysis of normal sample TARGET-52-PARZBI-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PARZBI-11A-01D A22750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22750_3_lanes_dupsFlagged.bam	SRR1283692	@dbgap@:reads/SRP012005/SRS605537/SRX540515/SRR1283692/SRR1283692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARZBI-01A-02D_TARGET-52-PARZBI-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02D	DNA	EFO	SRS301358	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02D A47581 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47581	SRX1013020	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PARZRH-01A-02D A47581 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47581_2_lanes_dupsFlagged.bam	SRR2001426	@dbgap@:reads/SRP012005/SRS301358/SRX1013020/SRR2001426/SRR2001426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZRH-01A-02D.fusion.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02D	DNA	EFO	SRS301358	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02D A47581 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47581	SRX1013020	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PARZRH-01A-02D A47581 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47581_2_lanes_dupsFlagged.bam	SRR2001426	@dbgap@:reads/SRP012005/SRS301358/SRX1013020/SRR2001426/SRR2001426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZRH-01A-02D.indel.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02D	DNA	EFO	SRS301358	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02D A47581 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47581	SRX1013020	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PARZRH-01A-02D A47581 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47581_2_lanes_dupsFlagged.bam	SRR2001426	@dbgap@:reads/SRP012005/SRS301358/SRX1013020/SRR2001426/SRR2001426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARZRH-01A-02D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02D	DNA	EFO	SRS301358	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02D A47581 library	PAIRED	GENOMIC	WGS	RANDOM	503	A47581	SRX1013020	"WGS analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PARZRH-01A-02D A47581 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47581_2_lanes_dupsFlagged.bam	SRR2001426	@dbgap@:reads/SRP012005/SRS301358/SRX1013020/SRR2001426/SRR2001426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARZRH-01A-02D_TARGET-52-PARZRH-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-10A-01D	DNA	EFO	SRS301359	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-10A-01D A47600 library	PAIRED	GENOMIC	WGS	RANDOM	496	A47600	SRX1013019	"WGS analysis of normal sample TARGET-52-PARZRH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARZRH-10A-01D A47600 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47600_2_lanes_dupsFlagged.bam	SRR2001413	@dbgap@:reads/SRP012005/SRS301359/SRX1013019/SRR2001413/SRR2001413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZRH-10A-01D.fusion.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-10A-01D	DNA	EFO	SRS301359	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-10A-01D A47600 library	PAIRED	GENOMIC	WGS	RANDOM	496	A47600	SRX1013019	"WGS analysis of normal sample TARGET-52-PARZRH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARZRH-10A-01D A47600 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47600_2_lanes_dupsFlagged.bam	SRR2001413	@dbgap@:reads/SRP012005/SRS301359/SRX1013019/SRR2001413/SRR2001413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PARZRH-10A-01D.indel.vcf	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-10A-01D	DNA	EFO	SRS301359	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-10A-01D A47600 library	PAIRED	GENOMIC	WGS	RANDOM	496	A47600	SRX1013019	"WGS analysis of normal sample TARGET-52-PARZRH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARZRH-10A-01D A47600 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47600_2_lanes_dupsFlagged.bam	SRR2001413	@dbgap@:reads/SRP012005/SRS301359/SRX1013019/SRR2001413/SRR2001413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PARZRH-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-10A-01D	DNA	EFO	SRS301359	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-10A-01D A47600 library	PAIRED	GENOMIC	WGS	RANDOM	496	A47600	SRX1013019	"WGS analysis of normal sample TARGET-52-PARZRH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PARZRH-10A-01D A47600 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47600_2_lanes_dupsFlagged.bam	SRR2001413	@dbgap@:reads/SRP012005/SRS301359/SRX1013019/SRR2001413/SRR2001413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PARZRH-01A-02D_TARGET-52-PARZRH-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01D	DNA	EFO	SRS301360	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01D A22695 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22695	SRX535857	"WGS analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-01A-01D A22695 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22695_3_lanes_dupsFlagged.bam	SRR1276147	@dbgap@:reads/SRP012005/SRS301360/SRX535857/SRR1276147/SRR1276147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASABD-01A-01D.fusion.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01D	DNA	EFO	SRS301360	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01D A22695 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22695	SRX535857	"WGS analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-01A-01D A22695 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22695_3_lanes_dupsFlagged.bam	SRR1276147	@dbgap@:reads/SRP012005/SRS301360/SRX535857/SRR1276147/SRR1276147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASABD-01A-01D.indel.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01D	DNA	EFO	SRS301360	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01D A22695 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22695	SRX535857	"WGS analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-01A-01D A22695 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22695_3_lanes_dupsFlagged.bam	SRR1276147	@dbgap@:reads/SRP012005/SRS301360/SRX535857/SRR1276147/SRR1276147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASABD-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01D	DNA	EFO	SRS301360	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01D A22695 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22695	SRX535857	"WGS analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-01A-01D A22695 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22695_3_lanes_dupsFlagged.bam	SRR1276147	@dbgap@:reads/SRP012005/SRS301360/SRX535857/SRR1276147/SRR1276147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASABD-01A-01D_TARGET-52-PASABD-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-10A-01D	DNA	EFO	SRS301361	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-10A-01D A22696 library	PAIRED	GENOMIC	WGS	RANDOM	371	A22696	SRX535843	"WGS analysis of normal sample TARGET-52-PASABD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-10A-01D A22696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22696_3_lanes_dupsFlagged.bam	SRR1276168	@dbgap@:reads/SRP012005/SRS301361/SRX535843/SRR1276168/SRR1276168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASABD-10A-01D.fusion.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-10A-01D	DNA	EFO	SRS301361	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-10A-01D A22696 library	PAIRED	GENOMIC	WGS	RANDOM	371	A22696	SRX535843	"WGS analysis of normal sample TARGET-52-PASABD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-10A-01D A22696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22696_3_lanes_dupsFlagged.bam	SRR1276168	@dbgap@:reads/SRP012005/SRS301361/SRX535843/SRR1276168/SRR1276168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASABD-10A-01D.indel.vcf	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-10A-01D	DNA	EFO	SRS301361	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-10A-01D A22696 library	PAIRED	GENOMIC	WGS	RANDOM	371	A22696	SRX535843	"WGS analysis of normal sample TARGET-52-PASABD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-10A-01D A22696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22696_3_lanes_dupsFlagged.bam	SRR1276168	@dbgap@:reads/SRP012005/SRS301361/SRX535843/SRR1276168/SRR1276168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASABD-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-10A-01D	DNA	EFO	SRS301361	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-10A-01D A22696 library	PAIRED	GENOMIC	WGS	RANDOM	371	A22696	SRX535843	"WGS analysis of normal sample TARGET-52-PASABD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-12	TARGET-52-PASABD-10A-01D A22696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22696_3_lanes_dupsFlagged.bam	SRR1276168	@dbgap@:reads/SRP012005/SRS301361/SRX535843/SRR1276168/SRR1276168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASABD-01A-01D_TARGET-52-PASABD-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01D	DNA	EFO	SRS301362	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01D A22697 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22697	SRX535866	"WGS analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-01A-01D A22697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22697_3_lanes_dupsFlagged.bam	SRR1276152	@dbgap@:reads/SRP012005/SRS301362/SRX535866/SRR1276152/SRR1276152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASADZ-01A-01D.fusion.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01D	DNA	EFO	SRS301362	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01D A22697 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22697	SRX535866	"WGS analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-01A-01D A22697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22697_3_lanes_dupsFlagged.bam	SRR1276152	@dbgap@:reads/SRP012005/SRS301362/SRX535866/SRR1276152/SRR1276152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASADZ-01A-01D.indel.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01D	DNA	EFO	SRS301362	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01D A22697 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22697	SRX535866	"WGS analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-01A-01D A22697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22697_3_lanes_dupsFlagged.bam	SRR1276152	@dbgap@:reads/SRP012005/SRS301362/SRX535866/SRR1276152/SRR1276152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASADZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01D	DNA	EFO	SRS301362	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01D A22697 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22697	SRX535866	"WGS analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-01A-01D A22697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22697_3_lanes_dupsFlagged.bam	SRR1276152	@dbgap@:reads/SRP012005/SRS301362/SRX535866/SRR1276152/SRR1276152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASADZ-01A-01D_TARGET-52-PASADZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-10A-01D	DNA	EFO	SRS301363	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-10A-01D A22698 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22698	SRX535863	"WGS analysis of normal sample TARGET-52-PASADZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-10A-01D A22698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22698_3_lanes_dupsFlagged.bam	SRR1276164	@dbgap@:reads/SRP012005/SRS301363/SRX535863/SRR1276164/SRR1276164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASADZ-10A-01D.fusion.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-10A-01D	DNA	EFO	SRS301363	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-10A-01D A22698 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22698	SRX535863	"WGS analysis of normal sample TARGET-52-PASADZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-10A-01D A22698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22698_3_lanes_dupsFlagged.bam	SRR1276164	@dbgap@:reads/SRP012005/SRS301363/SRX535863/SRR1276164/SRR1276164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASADZ-10A-01D.indel.vcf	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-10A-01D	DNA	EFO	SRS301363	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-10A-01D A22698 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22698	SRX535863	"WGS analysis of normal sample TARGET-52-PASADZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-10A-01D A22698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22698_3_lanes_dupsFlagged.bam	SRR1276164	@dbgap@:reads/SRP012005/SRS301363/SRX535863/SRR1276164/SRR1276164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASADZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-10A-01D	DNA	EFO	SRS301363	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-10A-01D A22698 library	PAIRED	GENOMIC	WGS	RANDOM	367	A22698	SRX535863	"WGS analysis of normal sample TARGET-52-PASADZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASADZ-10A-01D A22698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22698_3_lanes_dupsFlagged.bam	SRR1276164	@dbgap@:reads/SRP012005/SRS301363/SRX535863/SRR1276164/SRR1276164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASADZ-01A-01D_TARGET-52-PASADZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01D	DNA	EFO	SRS924746	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01D A47573 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47573	SRX1012967	"WGS analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PASAMZ-01A-01D A47573 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47573_2_lanes_dupsFlagged.bam	SRR2001379	@dbgap@:reads/SRP012005/SRS924746/SRX1012967/SRR2001379/SRR2001379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASAMZ-01A-01D.fusion.vcf	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01D	DNA	EFO	SRS924746	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01D A47573 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47573	SRX1012967	"WGS analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PASAMZ-01A-01D A47573 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47573_2_lanes_dupsFlagged.bam	SRR2001379	@dbgap@:reads/SRP012005/SRS924746/SRX1012967/SRR2001379/SRR2001379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASAMZ-01A-01D.indel.vcf	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01D	DNA	EFO	SRS924746	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01D A47573 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47573	SRX1012967	"WGS analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PASAMZ-01A-01D A47573 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47573_2_lanes_dupsFlagged.bam	SRR2001379	@dbgap@:reads/SRP012005/SRS924746/SRX1012967/SRR2001379/SRR2001379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASAMZ-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01D	DNA	EFO	SRS301364	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01D A22699 library	PAIRED	GENOMIC	WGS	RANDOM	399	A22699	SRX535860	"WGS analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-01A-01D A22699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22699_3_lanes_dupsFlagged.bam	SRR1276171	@dbgap@:reads/SRP012005/SRS301364/SRX535860/SRR1276171/SRR1276171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASCDH-01A-01D.fusion.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01D	DNA	EFO	SRS301364	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01D A22699 library	PAIRED	GENOMIC	WGS	RANDOM	399	A22699	SRX535860	"WGS analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-01A-01D A22699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22699_3_lanes_dupsFlagged.bam	SRR1276171	@dbgap@:reads/SRP012005/SRS301364/SRX535860/SRR1276171/SRR1276171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASCDH-01A-01D.indel.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01D	DNA	EFO	SRS301364	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01D A22699 library	PAIRED	GENOMIC	WGS	RANDOM	399	A22699	SRX535860	"WGS analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-01A-01D A22699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22699_3_lanes_dupsFlagged.bam	SRR1276171	@dbgap@:reads/SRP012005/SRS301364/SRX535860/SRR1276171/SRR1276171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASCDH-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01D	DNA	EFO	SRS301364	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01D A22699 library	PAIRED	GENOMIC	WGS	RANDOM	399	A22699	SRX535860	"WGS analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-01A-01D A22699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22699_3_lanes_dupsFlagged.bam	SRR1276171	@dbgap@:reads/SRP012005/SRS301364/SRX535860/SRR1276171/SRR1276171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASCDH-01A-01D_TARGET-52-PASCDH-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-10A-01D	DNA	EFO	SRS301365	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-10A-01D A22700 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22700	SRX535854	"WGS analysis of normal sample TARGET-52-PASCDH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-10A-01D A22700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22700_3_lanes_dupsFlagged.bam	SRR1276150	@dbgap@:reads/SRP012005/SRS301365/SRX535854/SRR1276150/SRR1276150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASCDH-10A-01D.fusion.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-10A-01D	DNA	EFO	SRS301365	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-10A-01D A22700 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22700	SRX535854	"WGS analysis of normal sample TARGET-52-PASCDH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-10A-01D A22700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22700_3_lanes_dupsFlagged.bam	SRR1276150	@dbgap@:reads/SRP012005/SRS301365/SRX535854/SRR1276150/SRR1276150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASCDH-10A-01D.indel.vcf	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-10A-01D	DNA	EFO	SRS301365	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-10A-01D A22700 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22700	SRX535854	"WGS analysis of normal sample TARGET-52-PASCDH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-10A-01D A22700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22700_3_lanes_dupsFlagged.bam	SRR1276150	@dbgap@:reads/SRP012005/SRS301365/SRX535854/SRR1276150/SRR1276150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASCDH-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-10A-01D	DNA	EFO	SRS301365	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-10A-01D A22700 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22700	SRX535854	"WGS analysis of normal sample TARGET-52-PASCDH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASCDH-10A-01D A22700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22700_3_lanes_dupsFlagged.bam	SRR1276150	@dbgap@:reads/SRP012005/SRS301365/SRX535854/SRR1276150/SRR1276150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASCDH-01A-01D_TARGET-52-PASCDH-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01D	DNA	EFO	SRS301366	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01D A22721 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22721	SRX539989	"WGS analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-01A-01D A22721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22721_3_lanes_dupsFlagged.bam	SRR1283066	@dbgap@:reads/SRP012005/SRS301366/SRX539989/SRR1283066/SRR1283066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASDLA-01A-01D.fusion.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01D	DNA	EFO	SRS301366	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01D A22721 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22721	SRX539989	"WGS analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-01A-01D A22721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22721_3_lanes_dupsFlagged.bam	SRR1283066	@dbgap@:reads/SRP012005/SRS301366/SRX539989/SRR1283066/SRR1283066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASDLA-01A-01D.indel.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01D	DNA	EFO	SRS301366	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01D A22721 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22721	SRX539989	"WGS analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-01A-01D A22721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22721_3_lanes_dupsFlagged.bam	SRR1283066	@dbgap@:reads/SRP012005/SRS301366/SRX539989/SRR1283066/SRR1283066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASDLA-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01D	DNA	EFO	SRS301366	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01D A22721 library	PAIRED	GENOMIC	WGS	RANDOM	389	A22721	SRX539989	"WGS analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-01A-01D A22721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22721_3_lanes_dupsFlagged.bam	SRR1283066	@dbgap@:reads/SRP012005/SRS301366/SRX539989/SRR1283066/SRR1283066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASDLA-01A-01D_TARGET-52-PASDLA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01D	DNA	EFO	SRS301367	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01D A22722 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22722	SRX539978	"WGS analysis of normal sample TARGET-52-PASDLA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-11A-01D A22722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22722_3_lanes_dupsFlagged.bam	SRR1283064	@dbgap@:reads/SRP012005/SRS301367/SRX539978/SRR1283064/SRR1283064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASDLA-11A-01D.fusion.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01D	DNA	EFO	SRS301367	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01D A22722 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22722	SRX539978	"WGS analysis of normal sample TARGET-52-PASDLA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-11A-01D A22722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22722_3_lanes_dupsFlagged.bam	SRR1283064	@dbgap@:reads/SRP012005/SRS301367/SRX539978/SRR1283064/SRR1283064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASDLA-11A-01D.indel.vcf	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01D	DNA	EFO	SRS301367	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01D A22722 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22722	SRX539978	"WGS analysis of normal sample TARGET-52-PASDLA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-11A-01D A22722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22722_3_lanes_dupsFlagged.bam	SRR1283064	@dbgap@:reads/SRP012005/SRS301367/SRX539978/SRR1283064/SRR1283064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASDLA-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-11A-01D	DNA	EFO	SRS301367	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-11A-01D A22722 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22722	SRX539978	"WGS analysis of normal sample TARGET-52-PASDLA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASDLA-11A-01D A22722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22722_3_lanes_dupsFlagged.bam	SRR1283064	@dbgap@:reads/SRP012005/SRS301367/SRX539978/SRR1283064/SRR1283064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASDLA-01A-01D_TARGET-52-PASDLA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02D	DNA	EFO	SRS301368	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02D A47568 library	PAIRED	GENOMIC	WGS	RANDOM	500	A47568	SRX1012977	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PASGCL-01A-02D A47568 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47568_2_lanes_dupsFlagged.bam	SRR2001366	@dbgap@:reads/SRP012005/SRS301368/SRX1012977/SRR2001366/SRR2001366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGCL-01A-02D.fusion.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02D	DNA	EFO	SRS301368	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02D A47568 library	PAIRED	GENOMIC	WGS	RANDOM	500	A47568	SRX1012977	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PASGCL-01A-02D A47568 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47568_2_lanes_dupsFlagged.bam	SRR2001366	@dbgap@:reads/SRP012005/SRS301368/SRX1012977/SRR2001366/SRR2001366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGCL-01A-02D.indel.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02D	DNA	EFO	SRS301368	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02D A47568 library	PAIRED	GENOMIC	WGS	RANDOM	500	A47568	SRX1012977	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PASGCL-01A-02D A47568 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47568_2_lanes_dupsFlagged.bam	SRR2001366	@dbgap@:reads/SRP012005/SRS301368/SRX1012977/SRR2001366/SRR2001366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASGCL-01A-02D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02D	DNA	EFO	SRS301368	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02D A47568 library	PAIRED	GENOMIC	WGS	RANDOM	500	A47568	SRX1012977	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PASGCL-01A-02D A47568 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47568_2_lanes_dupsFlagged.bam	SRR2001366	@dbgap@:reads/SRP012005/SRS301368/SRX1012977/SRR2001366/SRR2001366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASGCL-01A-02D_TARGET-52-PASGCL-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-10A-01D	DNA	EFO	SRS301369	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-10A-01D A47598 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47598	SRX1012976	"WGS analysis of normal sample TARGET-52-PASGCL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PASGCL-10A-01D A47598 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47598_2_lanes_dupsFlagged.bam	SRR2001382	@dbgap@:reads/SRP012005/SRS301369/SRX1012976/SRR2001382/SRR2001382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGCL-10A-01D.fusion.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-10A-01D	DNA	EFO	SRS301369	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-10A-01D A47598 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47598	SRX1012976	"WGS analysis of normal sample TARGET-52-PASGCL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PASGCL-10A-01D A47598 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47598_2_lanes_dupsFlagged.bam	SRR2001382	@dbgap@:reads/SRP012005/SRS301369/SRX1012976/SRR2001382/SRR2001382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGCL-10A-01D.indel.vcf	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-10A-01D	DNA	EFO	SRS301369	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-10A-01D A47598 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47598	SRX1012976	"WGS analysis of normal sample TARGET-52-PASGCL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PASGCL-10A-01D A47598 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47598_2_lanes_dupsFlagged.bam	SRR2001382	@dbgap@:reads/SRP012005/SRS301369/SRX1012976/SRR2001382/SRR2001382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASGCL-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-10A-01D	DNA	EFO	SRS301369	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-10A-01D A47598 library	PAIRED	GENOMIC	WGS	RANDOM	498	A47598	SRX1012976	"WGS analysis of normal sample TARGET-52-PASGCL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PASGCL-10A-01D A47598 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47598_2_lanes_dupsFlagged.bam	SRR2001382	@dbgap@:reads/SRP012005/SRS301369/SRX1012976/SRR2001382/SRR2001382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASGCL-01A-02D_TARGET-52-PASGCL-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01D	DNA	EFO	SRS924757	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01D A47574 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47574	SRX1012965	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASGGN-01A-01D A47574 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47574_2_lanes_dupsFlagged.bam	SRR2001380	@dbgap@:reads/SRP012005/SRS924757/SRX1012965/SRR2001380/SRR2001380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGGN-01A-01D.fusion.vcf	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01D	DNA	EFO	SRS924757	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01D A47574 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47574	SRX1012965	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASGGN-01A-01D A47574 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47574_2_lanes_dupsFlagged.bam	SRR2001380	@dbgap@:reads/SRP012005/SRS924757/SRX1012965/SRR2001380/SRR2001380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASGGN-01A-01D.indel.vcf	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01D	DNA	EFO	SRS924757	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01D A47574 library	PAIRED	GENOMIC	WGS	RANDOM	508	A47574	SRX1012965	"WGS analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASGGN-01A-01D A47574 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47574_2_lanes_dupsFlagged.bam	SRR2001380	@dbgap@:reads/SRP012005/SRS924757/SRX1012965/SRR2001380/SRR2001380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASGGN-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01D	DNA	EFO	SRS924745	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01D A47575 library	PAIRED	GENOMIC	WGS	RANDOM	505	A47575	SRX1012958	"WGS analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASILR-01A-01D A47575 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47575_2_lanes_dupsFlagged.bam	SRR2001373	@dbgap@:reads/SRP012005/SRS924745/SRX1012958/SRR2001373/SRR2001373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASILR-01A-01D.fusion.vcf	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01D	DNA	EFO	SRS924745	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01D A47575 library	PAIRED	GENOMIC	WGS	RANDOM	505	A47575	SRX1012958	"WGS analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASILR-01A-01D A47575 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47575_2_lanes_dupsFlagged.bam	SRR2001373	@dbgap@:reads/SRP012005/SRS924745/SRX1012958/SRR2001373/SRR2001373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASILR-01A-01D.indel.vcf	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01D	DNA	EFO	SRS924745	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01D A47575 library	PAIRED	GENOMIC	WGS	RANDOM	505	A47575	SRX1012958	"WGS analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASILR-01A-01D A47575 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47575_2_lanes_dupsFlagged.bam	SRR2001373	@dbgap@:reads/SRP012005/SRS924745/SRX1012958/SRR2001373/SRR2001373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASILR-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01D	DNA	EFO	SRS924784	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01D A47582 library	PAIRED	GENOMIC	WGS	RANDOM	512	A47582	SRX1013011	"WGS analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASNED-01A-01D A47582 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47582_2_lanes_dupsFlagged.bam	SRR2001414	@dbgap@:reads/SRP012005/SRS924784/SRX1013011/SRR2001414/SRR2001414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASNED-01A-01D.fusion.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01D	DNA	EFO	SRS924784	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01D A47582 library	PAIRED	GENOMIC	WGS	RANDOM	512	A47582	SRX1013011	"WGS analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASNED-01A-01D A47582 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47582_2_lanes_dupsFlagged.bam	SRR2001414	@dbgap@:reads/SRP012005/SRS924784/SRX1013011/SRR2001414/SRR2001414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASNED-01A-01D.indel.vcf	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01D	DNA	EFO	SRS924784	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01D A47582 library	PAIRED	GENOMIC	WGS	RANDOM	512	A47582	SRX1013011	"WGS analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASNED-01A-01D A47582 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47582_2_lanes_dupsFlagged.bam	SRR2001414	@dbgap@:reads/SRP012005/SRS924784/SRX1013011/SRR2001414/SRR2001414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASNED-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02D	DNA	EFO	SRS301370	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02D A22723 library	PAIRED	GENOMIC	WGS	RANDOM	366	A22723	SRX539987	"WGS analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-01A-02D A22723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22723_3_lanes_dupsFlagged.bam	SRR1283051	@dbgap@:reads/SRP012005/SRS301370/SRX539987/SRR1283051/SRR1283051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASRHU-01A-02D.fusion.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02D	DNA	EFO	SRS301370	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02D A22723 library	PAIRED	GENOMIC	WGS	RANDOM	366	A22723	SRX539987	"WGS analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-01A-02D A22723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22723_3_lanes_dupsFlagged.bam	SRR1283051	@dbgap@:reads/SRP012005/SRS301370/SRX539987/SRR1283051/SRR1283051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASRHU-01A-02D.indel.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02D	DNA	EFO	SRS301370	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02D A22723 library	PAIRED	GENOMIC	WGS	RANDOM	366	A22723	SRX539987	"WGS analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-01A-02D A22723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22723_3_lanes_dupsFlagged.bam	SRR1283051	@dbgap@:reads/SRP012005/SRS301370/SRX539987/SRR1283051/SRR1283051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASRHU-01A-02D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02D	DNA	EFO	SRS301370	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02D A22723 library	PAIRED	GENOMIC	WGS	RANDOM	366	A22723	SRX539987	"WGS analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-01A-02D A22723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22723_3_lanes_dupsFlagged.bam	SRR1283051	@dbgap@:reads/SRP012005/SRS301370/SRX539987/SRR1283051/SRR1283051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASRHU-01A-02D_TARGET-52-PASRHU-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-10A-01D	DNA	EFO	SRS301371	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-10A-01D A22724 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22724	SRX539996	"WGS analysis of normal sample TARGET-52-PASRHU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-10A-01D A22724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22724_3_lanes_dupsFlagged.bam	SRR1283045	@dbgap@:reads/SRP012005/SRS301371/SRX539996/SRR1283045/SRR1283045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASRHU-10A-01D.fusion.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-10A-01D	DNA	EFO	SRS301371	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-10A-01D A22724 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22724	SRX539996	"WGS analysis of normal sample TARGET-52-PASRHU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-10A-01D A22724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22724_3_lanes_dupsFlagged.bam	SRR1283045	@dbgap@:reads/SRP012005/SRS301371/SRX539996/SRR1283045/SRR1283045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASRHU-10A-01D.indel.vcf	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-10A-01D	DNA	EFO	SRS301371	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-10A-01D A22724 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22724	SRX539996	"WGS analysis of normal sample TARGET-52-PASRHU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-10A-01D A22724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22724_3_lanes_dupsFlagged.bam	SRR1283045	@dbgap@:reads/SRP012005/SRS301371/SRX539996/SRR1283045/SRR1283045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASRHU-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-10A-01D	DNA	EFO	SRS301371	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-10A-01D A22724 library	PAIRED	GENOMIC	WGS	RANDOM	338	A22724	SRX539996	"WGS analysis of normal sample TARGET-52-PASRHU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASRHU-10A-01D A22724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22724_3_lanes_dupsFlagged.bam	SRR1283045	@dbgap@:reads/SRP012005/SRS301371/SRX539996/SRR1283045/SRR1283045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASRHU-01A-02D_TARGET-52-PASRHU-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01D	DNA	EFO	SRS301372	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01D A22701 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22701	SRX535865	"WGS analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-01A-01D A22701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22701_3_lanes_dupsFlagged.bam	SRR1276162	@dbgap@:reads/SRP012005/SRS301372/SRX535865/SRR1276162/SRR1276162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASVDP-01A-01D.fusion.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01D	DNA	EFO	SRS301372	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01D A22701 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22701	SRX535865	"WGS analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-01A-01D A22701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22701_3_lanes_dupsFlagged.bam	SRR1276162	@dbgap@:reads/SRP012005/SRS301372/SRX535865/SRR1276162/SRR1276162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASVDP-01A-01D.indel.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01D	DNA	EFO	SRS301372	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01D A22701 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22701	SRX535865	"WGS analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-01A-01D A22701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22701_3_lanes_dupsFlagged.bam	SRR1276162	@dbgap@:reads/SRP012005/SRS301372/SRX535865/SRR1276162/SRR1276162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASVDP-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01D	DNA	EFO	SRS301372	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01D A22701 library	PAIRED	GENOMIC	WGS	RANDOM	337	A22701	SRX535865	"WGS analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-01A-01D A22701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22701_3_lanes_dupsFlagged.bam	SRR1276162	@dbgap@:reads/SRP012005/SRS301372/SRX535865/SRR1276162/SRR1276162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASVDP-01A-01D_TARGET-52-PASVDP-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-10A-01D	DNA	EFO	SRS301373	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-10A-01D A22702 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22702	SRX535862	"WGS analysis of normal sample TARGET-52-PASVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-10A-01D A22702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22702_3_lanes_dupsFlagged.bam	SRR1276148	@dbgap@:reads/SRP012005/SRS301373/SRX535862/SRR1276148/SRR1276148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASVDP-10A-01D.fusion.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-10A-01D	DNA	EFO	SRS301373	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-10A-01D A22702 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22702	SRX535862	"WGS analysis of normal sample TARGET-52-PASVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-10A-01D A22702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22702_3_lanes_dupsFlagged.bam	SRR1276148	@dbgap@:reads/SRP012005/SRS301373/SRX535862/SRR1276148/SRR1276148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASVDP-10A-01D.indel.vcf	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-10A-01D	DNA	EFO	SRS301373	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-10A-01D A22702 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22702	SRX535862	"WGS analysis of normal sample TARGET-52-PASVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-10A-01D A22702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22702_3_lanes_dupsFlagged.bam	SRR1276148	@dbgap@:reads/SRP012005/SRS301373/SRX535862/SRR1276148/SRR1276148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASVDP-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-10A-01D	DNA	EFO	SRS301373	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-10A-01D A22702 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22702	SRX535862	"WGS analysis of normal sample TARGET-52-PASVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASVDP-10A-01D A22702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22702_3_lanes_dupsFlagged.bam	SRR1276148	@dbgap@:reads/SRP012005/SRS301373/SRX535862/SRR1276148/SRR1276148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASVDP-01A-01D_TARGET-52-PASVDP-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01D	DNA	EFO	SRS301374	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01D A22703 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22703	SRX535845	"WGS analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-01A-01D A22703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22703_3_lanes_dupsFlagged.bam	SRR1276154	@dbgap@:reads/SRP012005/SRS301374/SRX535845/SRR1276154/SRR1276154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASWZZ-01A-01D.fusion.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01D	DNA	EFO	SRS301374	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01D A22703 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22703	SRX535845	"WGS analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-01A-01D A22703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22703_3_lanes_dupsFlagged.bam	SRR1276154	@dbgap@:reads/SRP012005/SRS301374/SRX535845/SRR1276154/SRR1276154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASWZZ-01A-01D.indel.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01D	DNA	EFO	SRS301374	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01D A22703 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22703	SRX535845	"WGS analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-01A-01D A22703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22703_3_lanes_dupsFlagged.bam	SRR1276154	@dbgap@:reads/SRP012005/SRS301374/SRX535845/SRR1276154/SRR1276154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASWZZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01D	DNA	EFO	SRS301374	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01D A22703 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22703	SRX535845	"WGS analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-01A-01D A22703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22703_3_lanes_dupsFlagged.bam	SRR1276154	@dbgap@:reads/SRP012005/SRS301374/SRX535845/SRR1276154/SRR1276154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASWZZ-01A-01D_TARGET-52-PASWZZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-10A-01D	DNA	EFO	SRS301375	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-10A-01D A22704 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22704	SRX535849	"WGS analysis of normal sample TARGET-52-PASWZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-10A-01D A22704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22704_3_lanes_dupsFlagged.bam	SRR1276153	@dbgap@:reads/SRP012005/SRS301375/SRX535849/SRR1276153/SRR1276153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASWZZ-10A-01D.fusion.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-10A-01D	DNA	EFO	SRS301375	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-10A-01D A22704 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22704	SRX535849	"WGS analysis of normal sample TARGET-52-PASWZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-10A-01D A22704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22704_3_lanes_dupsFlagged.bam	SRR1276153	@dbgap@:reads/SRP012005/SRS301375/SRX535849/SRR1276153/SRR1276153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASWZZ-10A-01D.indel.vcf	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-10A-01D	DNA	EFO	SRS301375	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-10A-01D A22704 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22704	SRX535849	"WGS analysis of normal sample TARGET-52-PASWZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-10A-01D A22704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22704_3_lanes_dupsFlagged.bam	SRR1276153	@dbgap@:reads/SRP012005/SRS301375/SRX535849/SRR1276153/SRR1276153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASWZZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-10A-01D	DNA	EFO	SRS301375	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-10A-01D A22704 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22704	SRX535849	"WGS analysis of normal sample TARGET-52-PASWZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-06	TARGET-52-PASWZZ-10A-01D A22704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22704_3_lanes_dupsFlagged.bam	SRR1276153	@dbgap@:reads/SRP012005/SRS301375/SRX535849/SRR1276153/SRR1276153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASWZZ-01A-01D_TARGET-52-PASWZZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01D	DNA	EFO	SRS924747	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01D A47576 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47576	SRX1012978	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASXGF-01A-01D A47576 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47576_2_lanes_dupsFlagged.bam	SRR2001377	@dbgap@:reads/SRP012005/SRS924747/SRX1012978/SRR2001377/SRR2001377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXGF-01A-01D.fusion.vcf	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01D	DNA	EFO	SRS924747	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01D A47576 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47576	SRX1012978	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASXGF-01A-01D A47576 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47576_2_lanes_dupsFlagged.bam	SRR2001377	@dbgap@:reads/SRP012005/SRS924747/SRX1012978/SRR2001377/SRR2001377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXGF-01A-01D.indel.vcf	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01D	DNA	EFO	SRS924747	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01D A47576 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47576	SRX1012978	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PASXGF-01A-01D A47576 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47576_2_lanes_dupsFlagged.bam	SRR2001377	@dbgap@:reads/SRP012005/SRS924747/SRX1012978/SRR2001377/SRR2001377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASXGF-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01D	DNA	EFO	SRS301376	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01D A22725 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22725	SRX539995	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PASXNA-01A-01D A22725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22725_3_lanes_dupsFlagged.bam	SRR1283047	@dbgap@:reads/SRP012005/SRS301376/SRX539995/SRR1283047/SRR1283047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXNA-01A-01D.fusion.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01D	DNA	EFO	SRS301376	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01D A22725 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22725	SRX539995	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PASXNA-01A-01D A22725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22725_3_lanes_dupsFlagged.bam	SRR1283047	@dbgap@:reads/SRP012005/SRS301376/SRX539995/SRR1283047/SRR1283047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXNA-01A-01D.indel.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01D	DNA	EFO	SRS301376	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01D A22725 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22725	SRX539995	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PASXNA-01A-01D A22725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22725_3_lanes_dupsFlagged.bam	SRR1283047	@dbgap@:reads/SRP012005/SRS301376/SRX539995/SRR1283047/SRR1283047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASXNA-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01D	DNA	EFO	SRS301376	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01D A22725 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22725	SRX539995	"WGS analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PASXNA-01A-01D A22725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22725_3_lanes_dupsFlagged.bam	SRR1283047	@dbgap@:reads/SRP012005/SRS301376/SRX539995/SRR1283047/SRR1283047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASXNA-01A-01D_TARGET-52-PASXNA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01D	DNA	EFO	SRS301377	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01D A22726 library	PAIRED	GENOMIC	WGS	RANDOM	331	A22726	SRX539988	"WGS analysis of normal sample TARGET-52-PASXNA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-22	TARGET-52-PASXNA-11A-01D A22726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22726_3_lanes_dupsFlagged.bam	SRR1283041	@dbgap@:reads/SRP012005/SRS301377/SRX539988/SRR1283041/SRR1283041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXNA-11A-01D.fusion.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01D	DNA	EFO	SRS301377	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01D A22726 library	PAIRED	GENOMIC	WGS	RANDOM	331	A22726	SRX539988	"WGS analysis of normal sample TARGET-52-PASXNA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-22	TARGET-52-PASXNA-11A-01D A22726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22726_3_lanes_dupsFlagged.bam	SRR1283041	@dbgap@:reads/SRP012005/SRS301377/SRX539988/SRR1283041/SRR1283041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASXNA-11A-01D.indel.vcf	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01D	DNA	EFO	SRS301377	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01D A22726 library	PAIRED	GENOMIC	WGS	RANDOM	331	A22726	SRX539988	"WGS analysis of normal sample TARGET-52-PASXNA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-22	TARGET-52-PASXNA-11A-01D A22726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22726_3_lanes_dupsFlagged.bam	SRR1283041	@dbgap@:reads/SRP012005/SRS301377/SRX539988/SRR1283041/SRR1283041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASXNA-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-11A-01D	DNA	EFO	SRS301377	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-11A-01D A22726 library	PAIRED	GENOMIC	WGS	RANDOM	331	A22726	SRX539988	"WGS analysis of normal sample TARGET-52-PASXNA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-22	TARGET-52-PASXNA-11A-01D A22726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22726_3_lanes_dupsFlagged.bam	SRR1283041	@dbgap@:reads/SRP012005/SRS301377/SRX539988/SRR1283041/SRR1283041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASXNA-01A-01D_TARGET-52-PASXNA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01D	DNA	EFO	SRS605552	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01D A22751 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22751	SRX540534	"WGS analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-01A-01D A22751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22751_3_lanes_dupsFlagged.bam	SRR1283696	@dbgap@:reads/SRP012005/SRS605552/SRX540534/SRR1283696/SRR1283696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASYNF-01A-01D.fusion.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01D	DNA	EFO	SRS605552	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01D A22751 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22751	SRX540534	"WGS analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-01A-01D A22751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22751_3_lanes_dupsFlagged.bam	SRR1283696	@dbgap@:reads/SRP012005/SRS605552/SRX540534/SRR1283696/SRR1283696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASYNF-01A-01D.indel.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01D	DNA	EFO	SRS605552	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01D A22751 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22751	SRX540534	"WGS analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-01A-01D A22751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22751_3_lanes_dupsFlagged.bam	SRR1283696	@dbgap@:reads/SRP012005/SRS605552/SRX540534/SRR1283696/SRR1283696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASYNF-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01D	DNA	EFO	SRS605552	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01D A22751 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22751	SRX540534	"WGS analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-01A-01D A22751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22751_3_lanes_dupsFlagged.bam	SRR1283696	@dbgap@:reads/SRP012005/SRS605552/SRX540534/SRR1283696/SRR1283696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASYNF-01A-01D_TARGET-52-PASYNF-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-10A-01D	DNA	EFO	SRS605533	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-10A-01D A22752 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22752	SRX540509	"WGS analysis of normal sample TARGET-52-PASYNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-10A-01D A22752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22752_3_lanes_dupsFlagged.bam	SRR1283691	@dbgap@:reads/SRP012005/SRS605533/SRX540509/SRR1283691/SRR1283691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASYNF-10A-01D.fusion.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-10A-01D	DNA	EFO	SRS605533	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-10A-01D A22752 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22752	SRX540509	"WGS analysis of normal sample TARGET-52-PASYNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-10A-01D A22752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22752_3_lanes_dupsFlagged.bam	SRR1283691	@dbgap@:reads/SRP012005/SRS605533/SRX540509/SRR1283691/SRR1283691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASYNF-10A-01D.indel.vcf	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-10A-01D	DNA	EFO	SRS605533	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-10A-01D A22752 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22752	SRX540509	"WGS analysis of normal sample TARGET-52-PASYNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-10A-01D A22752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22752_3_lanes_dupsFlagged.bam	SRR1283691	@dbgap@:reads/SRP012005/SRS605533/SRX540509/SRR1283691/SRR1283691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASYNF-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-10A-01D	DNA	EFO	SRS605533	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-10A-01D A22752 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22752	SRX540509	"WGS analysis of normal sample TARGET-52-PASYNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PASYNF-10A-01D A22752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22752_3_lanes_dupsFlagged.bam	SRR1283691	@dbgap@:reads/SRP012005/SRS605533/SRX540509/SRR1283691/SRR1283691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASYNF-01A-01D_TARGET-52-PASYNF-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01D	DNA	EFO	SRS301378	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01D A22705 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22705	SRX535855	"WGS analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-01A-01D A22705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22705_3_lanes_dupsFlagged.bam	SRR1276166	@dbgap@:reads/SRP012005/SRS301378/SRX535855/SRR1276166/SRR1276166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASZYE-01A-01D.fusion.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01D	DNA	EFO	SRS301378	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01D A22705 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22705	SRX535855	"WGS analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-01A-01D A22705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22705_3_lanes_dupsFlagged.bam	SRR1276166	@dbgap@:reads/SRP012005/SRS301378/SRX535855/SRR1276166/SRR1276166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASZYE-01A-01D.indel.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01D	DNA	EFO	SRS301378	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01D A22705 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22705	SRX535855	"WGS analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-01A-01D A22705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22705_3_lanes_dupsFlagged.bam	SRR1276166	@dbgap@:reads/SRP012005/SRS301378/SRX535855/SRR1276166/SRR1276166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASZYE-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01D	DNA	EFO	SRS301378	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01D A22705 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22705	SRX535855	"WGS analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-01A-01D A22705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22705_3_lanes_dupsFlagged.bam	SRR1276166	@dbgap@:reads/SRP012005/SRS301378/SRX535855/SRR1276166/SRR1276166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASZYE-01A-01D_TARGET-52-PASZYE-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-10A-01D	DNA	EFO	SRS301379	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-10A-01D A22706 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22706	SRX535841	"WGS analysis of normal sample TARGET-52-PASZYE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-10A-01D A22706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22706_3_lanes_dupsFlagged.bam	SRR1276167	@dbgap@:reads/SRP012005/SRS301379/SRX535841/SRR1276167/SRR1276167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASZYE-10A-01D.fusion.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-10A-01D	DNA	EFO	SRS301379	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-10A-01D A22706 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22706	SRX535841	"WGS analysis of normal sample TARGET-52-PASZYE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-10A-01D A22706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22706_3_lanes_dupsFlagged.bam	SRR1276167	@dbgap@:reads/SRP012005/SRS301379/SRX535841/SRR1276167/SRR1276167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PASZYE-10A-01D.indel.vcf	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-10A-01D	DNA	EFO	SRS301379	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-10A-01D A22706 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22706	SRX535841	"WGS analysis of normal sample TARGET-52-PASZYE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-10A-01D A22706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22706_3_lanes_dupsFlagged.bam	SRR1276167	@dbgap@:reads/SRP012005/SRS301379/SRX535841/SRR1276167/SRR1276167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PASZYE-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-10A-01D	DNA	EFO	SRS301379	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-10A-01D A22706 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22706	SRX535841	"WGS analysis of normal sample TARGET-52-PASZYE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PASZYE-10A-01D A22706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22706_3_lanes_dupsFlagged.bam	SRR1276167	@dbgap@:reads/SRP012005/SRS301379/SRX535841/SRR1276167/SRR1276167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PASZYE-01A-01D_TARGET-52-PASZYE-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01D	DNA	EFO	SRS301380	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01D A22727 library	PAIRED	GENOMIC	WGS	RANDOM	282	A22727	SRX539984	"WGS analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-01A-01D A22727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22727_3_lanes_dupsFlagged.bam	SRR1283069	@dbgap@:reads/SRP012005/SRS301380/SRX539984/SRR1283069/SRR1283069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATAFT-01A-01D.fusion.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01D	DNA	EFO	SRS301380	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01D A22727 library	PAIRED	GENOMIC	WGS	RANDOM	282	A22727	SRX539984	"WGS analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-01A-01D A22727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22727_3_lanes_dupsFlagged.bam	SRR1283069	@dbgap@:reads/SRP012005/SRS301380/SRX539984/SRR1283069/SRR1283069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATAFT-01A-01D.indel.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01D	DNA	EFO	SRS301380	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01D A22727 library	PAIRED	GENOMIC	WGS	RANDOM	282	A22727	SRX539984	"WGS analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-01A-01D A22727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22727_3_lanes_dupsFlagged.bam	SRR1283069	@dbgap@:reads/SRP012005/SRS301380/SRX539984/SRR1283069/SRR1283069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATAFT-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01D	DNA	EFO	SRS301380	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01D A22727 library	PAIRED	GENOMIC	WGS	RANDOM	282	A22727	SRX539984	"WGS analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-01A-01D A22727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22727_3_lanes_dupsFlagged.bam	SRR1283069	@dbgap@:reads/SRP012005/SRS301380/SRX539984/SRR1283069/SRR1283069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATAFT-01A-01D_TARGET-52-PATAFT-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-10A-01D	DNA	EFO	SRS301381	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-10A-01D A22728 library	PAIRED	GENOMIC	WGS	RANDOM	265	A22728	SRX539977	"WGS analysis of normal sample TARGET-52-PATAFT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-10A-01D A22728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22728_3_lanes_dupsFlagged.bam	SRR1283056	@dbgap@:reads/SRP012005/SRS301381/SRX539977/SRR1283056/SRR1283056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATAFT-10A-01D.fusion.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-10A-01D	DNA	EFO	SRS301381	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-10A-01D A22728 library	PAIRED	GENOMIC	WGS	RANDOM	265	A22728	SRX539977	"WGS analysis of normal sample TARGET-52-PATAFT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-10A-01D A22728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22728_3_lanes_dupsFlagged.bam	SRR1283056	@dbgap@:reads/SRP012005/SRS301381/SRX539977/SRR1283056/SRR1283056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATAFT-10A-01D.indel.vcf	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-10A-01D	DNA	EFO	SRS301381	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-10A-01D A22728 library	PAIRED	GENOMIC	WGS	RANDOM	265	A22728	SRX539977	"WGS analysis of normal sample TARGET-52-PATAFT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-10A-01D A22728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22728_3_lanes_dupsFlagged.bam	SRR1283056	@dbgap@:reads/SRP012005/SRS301381/SRX539977/SRR1283056/SRR1283056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATAFT-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-10A-01D	DNA	EFO	SRS301381	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-10A-01D A22728 library	PAIRED	GENOMIC	WGS	RANDOM	265	A22728	SRX539977	"WGS analysis of normal sample TARGET-52-PATAFT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATAFT-10A-01D A22728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22728_3_lanes_dupsFlagged.bam	SRR1283056	@dbgap@:reads/SRP012005/SRS301381/SRX539977/SRR1283056/SRR1283056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATAFT-01A-01D_TARGET-52-PATAFT-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01D	DNA	EFO	SRS301384	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01D A22707 library	PAIRED	GENOMIC	WGS	RANDOM	408	A22707	SRX535853	"WGS analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-01A-01D A22707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22707_3_lanes_dupsFlagged.bam	SRR1276165	@dbgap@:reads/SRP012005/SRS301384/SRX535853/SRR1276165/SRR1276165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATBLF-01A-01D.fusion.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01D	DNA	EFO	SRS301384	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01D A22707 library	PAIRED	GENOMIC	WGS	RANDOM	408	A22707	SRX535853	"WGS analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-01A-01D A22707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22707_3_lanes_dupsFlagged.bam	SRR1276165	@dbgap@:reads/SRP012005/SRS301384/SRX535853/SRR1276165/SRR1276165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATBLF-01A-01D.indel.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01D	DNA	EFO	SRS301384	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01D A22707 library	PAIRED	GENOMIC	WGS	RANDOM	408	A22707	SRX535853	"WGS analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-01A-01D A22707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22707_3_lanes_dupsFlagged.bam	SRR1276165	@dbgap@:reads/SRP012005/SRS301384/SRX535853/SRR1276165/SRR1276165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATBLF-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01D	DNA	EFO	SRS301384	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01D A22707 library	PAIRED	GENOMIC	WGS	RANDOM	408	A22707	SRX535853	"WGS analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-01A-01D A22707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22707_3_lanes_dupsFlagged.bam	SRR1276165	@dbgap@:reads/SRP012005/SRS301384/SRX535853/SRR1276165/SRR1276165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATBLF-01A-01D_TARGET-52-PATBLF-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-10A-01D	DNA	EFO	SRS301385	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-10A-01D A22708 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22708	SRX535846	"WGS analysis of normal sample TARGET-52-PATBLF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-10A-01D A22708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22708_3_lanes_dupsFlagged.bam	SRR1276169	@dbgap@:reads/SRP012005/SRS301385/SRX535846/SRR1276169/SRR1276169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATBLF-10A-01D.fusion.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-10A-01D	DNA	EFO	SRS301385	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-10A-01D A22708 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22708	SRX535846	"WGS analysis of normal sample TARGET-52-PATBLF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-10A-01D A22708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22708_3_lanes_dupsFlagged.bam	SRR1276169	@dbgap@:reads/SRP012005/SRS301385/SRX535846/SRR1276169/SRR1276169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATBLF-10A-01D.indel.vcf	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-10A-01D	DNA	EFO	SRS301385	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-10A-01D A22708 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22708	SRX535846	"WGS analysis of normal sample TARGET-52-PATBLF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-10A-01D A22708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22708_3_lanes_dupsFlagged.bam	SRR1276169	@dbgap@:reads/SRP012005/SRS301385/SRX535846/SRR1276169/SRR1276169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATBLF-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-10A-01D	DNA	EFO	SRS301385	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-10A-01D A22708 library	PAIRED	GENOMIC	WGS	RANDOM	345	A22708	SRX535846	"WGS analysis of normal sample TARGET-52-PATBLF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATBLF-10A-01D A22708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22708_3_lanes_dupsFlagged.bam	SRR1276169	@dbgap@:reads/SRP012005/SRS301385/SRX535846/SRR1276169/SRR1276169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATBLF-01A-01D_TARGET-52-PATBLF-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01D	DNA	EFO	SRS301386	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01D A22709 library	PAIRED	GENOMIC	WGS	RANDOM	351	A22709	SRX535861	"WGS analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-01A-01D A22709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22709_3_lanes_dupsFlagged.bam	SRR1276159	@dbgap@:reads/SRP012005/SRS301386/SRX535861/SRR1276159/SRR1276159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATDVL-01A-01D.fusion.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01D	DNA	EFO	SRS301386	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01D A22709 library	PAIRED	GENOMIC	WGS	RANDOM	351	A22709	SRX535861	"WGS analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-01A-01D A22709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22709_3_lanes_dupsFlagged.bam	SRR1276159	@dbgap@:reads/SRP012005/SRS301386/SRX535861/SRR1276159/SRR1276159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATDVL-01A-01D.indel.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01D	DNA	EFO	SRS301386	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01D A22709 library	PAIRED	GENOMIC	WGS	RANDOM	351	A22709	SRX535861	"WGS analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-01A-01D A22709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22709_3_lanes_dupsFlagged.bam	SRR1276159	@dbgap@:reads/SRP012005/SRS301386/SRX535861/SRR1276159/SRR1276159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATDVL-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01D	DNA	EFO	SRS301386	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01D A22709 library	PAIRED	GENOMIC	WGS	RANDOM	351	A22709	SRX535861	"WGS analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-01A-01D A22709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22709_3_lanes_dupsFlagged.bam	SRR1276159	@dbgap@:reads/SRP012005/SRS301386/SRX535861/SRR1276159/SRR1276159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATDVL-01A-01D_TARGET-52-PATDVL-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-10A-01D	DNA	EFO	SRS301387	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-10A-01D A22710 library	PAIRED	GENOMIC	WGS	RANDOM	360	A22710	SRX535842	"WGS analysis of normal sample TARGET-52-PATDVL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-10A-01D A22710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22710_3_lanes_dupsFlagged.bam	SRR1276160	@dbgap@:reads/SRP012005/SRS301387/SRX535842/SRR1276160/SRR1276160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATDVL-10A-01D.fusion.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-10A-01D	DNA	EFO	SRS301387	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-10A-01D A22710 library	PAIRED	GENOMIC	WGS	RANDOM	360	A22710	SRX535842	"WGS analysis of normal sample TARGET-52-PATDVL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-10A-01D A22710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22710_3_lanes_dupsFlagged.bam	SRR1276160	@dbgap@:reads/SRP012005/SRS301387/SRX535842/SRR1276160/SRR1276160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATDVL-10A-01D.indel.vcf	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-10A-01D	DNA	EFO	SRS301387	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-10A-01D A22710 library	PAIRED	GENOMIC	WGS	RANDOM	360	A22710	SRX535842	"WGS analysis of normal sample TARGET-52-PATDVL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-10A-01D A22710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22710_3_lanes_dupsFlagged.bam	SRR1276160	@dbgap@:reads/SRP012005/SRS301387/SRX535842/SRR1276160/SRR1276160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATDVL-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-10A-01D	DNA	EFO	SRS301387	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-10A-01D A22710 library	PAIRED	GENOMIC	WGS	RANDOM	360	A22710	SRX535842	"WGS analysis of normal sample TARGET-52-PATDVL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATDVL-10A-01D A22710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22710_3_lanes_dupsFlagged.bam	SRR1276160	@dbgap@:reads/SRP012005/SRS301387/SRX535842/SRR1276160/SRR1276160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATDVL-01A-01D_TARGET-52-PATDVL-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01D	DNA	EFO	SRS301388	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01D A22729 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22729	SRX539993	"WGS analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-01A-01D A22729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22729_3_lanes_dupsFlagged.bam	SRR1283050	@dbgap@:reads/SRP012005/SRS301388/SRX539993/SRR1283050/SRR1283050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATENH-01A-01D.fusion.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01D	DNA	EFO	SRS301388	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01D A22729 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22729	SRX539993	"WGS analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-01A-01D A22729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22729_3_lanes_dupsFlagged.bam	SRR1283050	@dbgap@:reads/SRP012005/SRS301388/SRX539993/SRR1283050/SRR1283050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATENH-01A-01D.indel.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01D	DNA	EFO	SRS301388	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01D A22729 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22729	SRX539993	"WGS analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-01A-01D A22729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22729_3_lanes_dupsFlagged.bam	SRR1283050	@dbgap@:reads/SRP012005/SRS301388/SRX539993/SRR1283050/SRR1283050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATENH-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01D	DNA	EFO	SRS301388	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01D A22729 library	PAIRED	GENOMIC	WGS	RANDOM	343	A22729	SRX539993	"WGS analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-01A-01D A22729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22729_3_lanes_dupsFlagged.bam	SRR1283050	@dbgap@:reads/SRP012005/SRS301388/SRX539993/SRR1283050/SRR1283050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATENH-01A-01D_TARGET-52-PATENH-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-11A-01D	DNA	EFO	SRS301389	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-11A-01D A22730 library	PAIRED	GENOMIC	WGS	RANDOM	354	A22730	SRX539998	"WGS analysis of normal sample TARGET-52-PATENH-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-11A-01D A22730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22730_3_lanes_dupsFlagged.bam	SRR1283046	@dbgap@:reads/SRP012005/SRS301389/SRX539998/SRR1283046/SRR1283046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATENH-11A-01D.fusion.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-11A-01D	DNA	EFO	SRS301389	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-11A-01D A22730 library	PAIRED	GENOMIC	WGS	RANDOM	354	A22730	SRX539998	"WGS analysis of normal sample TARGET-52-PATENH-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-11A-01D A22730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22730_3_lanes_dupsFlagged.bam	SRR1283046	@dbgap@:reads/SRP012005/SRS301389/SRX539998/SRR1283046/SRR1283046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATENH-11A-01D.indel.vcf	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-11A-01D	DNA	EFO	SRS301389	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-11A-01D A22730 library	PAIRED	GENOMIC	WGS	RANDOM	354	A22730	SRX539998	"WGS analysis of normal sample TARGET-52-PATENH-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-11A-01D A22730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22730_3_lanes_dupsFlagged.bam	SRR1283046	@dbgap@:reads/SRP012005/SRS301389/SRX539998/SRR1283046/SRR1283046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATENH-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-11A-01D	DNA	EFO	SRS301389	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-11A-01D A22730 library	PAIRED	GENOMIC	WGS	RANDOM	354	A22730	SRX539998	"WGS analysis of normal sample TARGET-52-PATENH-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATENH-11A-01D A22730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22730_3_lanes_dupsFlagged.bam	SRR1283046	@dbgap@:reads/SRP012005/SRS301389/SRX539998/SRR1283046/SRR1283046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATENH-01A-01D_TARGET-52-PATENH-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01D	DNA	EFO	SRS301390	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01D A22711 library	PAIRED	GENOMIC	WGS	RANDOM	358	A22711	SRX535848	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-01A-01D A22711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22711_3_lanes_dupsFlagged.bam	SRR1276151	@dbgap@:reads/SRP012005/SRS301390/SRX535848/SRR1276151/SRR1276151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFXW-01A-01D.fusion.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01D	DNA	EFO	SRS301390	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01D A22711 library	PAIRED	GENOMIC	WGS	RANDOM	358	A22711	SRX535848	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-01A-01D A22711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22711_3_lanes_dupsFlagged.bam	SRR1276151	@dbgap@:reads/SRP012005/SRS301390/SRX535848/SRR1276151/SRR1276151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFXW-01A-01D.indel.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01D	DNA	EFO	SRS301390	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01D A22711 library	PAIRED	GENOMIC	WGS	RANDOM	358	A22711	SRX535848	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-01A-01D A22711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22711_3_lanes_dupsFlagged.bam	SRR1276151	@dbgap@:reads/SRP012005/SRS301390/SRX535848/SRR1276151/SRR1276151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATFXW-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01D	DNA	EFO	SRS301390	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01D A22711 library	PAIRED	GENOMIC	WGS	RANDOM	358	A22711	SRX535848	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-01A-01D A22711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22711_3_lanes_dupsFlagged.bam	SRR1276151	@dbgap@:reads/SRP012005/SRS301390/SRX535848/SRR1276151/SRR1276151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATFXW-01A-01D_TARGET-52-PATFXW-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-10A-01D	DNA	EFO	SRS301391	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-10A-01D A22712 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22712	SRX535844	"WGS analysis of normal sample TARGET-52-PATFXW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-10A-01D A22712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22712_3_lanes_dupsFlagged.bam	SRR1276163	@dbgap@:reads/SRP012005/SRS301391/SRX535844/SRR1276163/SRR1276163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFXW-10A-01D.fusion.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-10A-01D	DNA	EFO	SRS301391	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-10A-01D A22712 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22712	SRX535844	"WGS analysis of normal sample TARGET-52-PATFXW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-10A-01D A22712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22712_3_lanes_dupsFlagged.bam	SRR1276163	@dbgap@:reads/SRP012005/SRS301391/SRX535844/SRR1276163/SRR1276163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFXW-10A-01D.indel.vcf	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-10A-01D	DNA	EFO	SRS301391	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-10A-01D A22712 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22712	SRX535844	"WGS analysis of normal sample TARGET-52-PATFXW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-10A-01D A22712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22712_3_lanes_dupsFlagged.bam	SRR1276163	@dbgap@:reads/SRP012005/SRS301391/SRX535844/SRR1276163/SRR1276163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATFXW-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-10A-01D	DNA	EFO	SRS301391	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-10A-01D A22712 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22712	SRX535844	"WGS analysis of normal sample TARGET-52-PATFXW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-16	TARGET-52-PATFXW-10A-01D A22712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22712_3_lanes_dupsFlagged.bam	SRR1276163	@dbgap@:reads/SRP012005/SRS301391/SRX535844/SRR1276163/SRR1276163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATFXW-01A-01D_TARGET-52-PATFXW-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01D	DNA	EFO	SRS301392	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01D A22713 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22713	SRX535847	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATFZZ-01A-01D A22713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22713_3_lanes_dupsFlagged.bam	SRR1276161	@dbgap@:reads/SRP012005/SRS301392/SRX535847/SRR1276161/SRR1276161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFZZ-01A-01D.fusion.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01D	DNA	EFO	SRS301392	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01D A22713 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22713	SRX535847	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATFZZ-01A-01D A22713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22713_3_lanes_dupsFlagged.bam	SRR1276161	@dbgap@:reads/SRP012005/SRS301392/SRX535847/SRR1276161/SRR1276161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFZZ-01A-01D.indel.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01D	DNA	EFO	SRS301392	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01D A22713 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22713	SRX535847	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATFZZ-01A-01D A22713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22713_3_lanes_dupsFlagged.bam	SRR1276161	@dbgap@:reads/SRP012005/SRS301392/SRX535847/SRR1276161/SRR1276161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATFZZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01D	DNA	EFO	SRS301392	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01D A22713 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22713	SRX535847	"WGS analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PATFZZ-01A-01D A22713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22713_3_lanes_dupsFlagged.bam	SRR1276161	@dbgap@:reads/SRP012005/SRS301392/SRX535847/SRR1276161/SRR1276161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATFZZ-01A-01D_TARGET-52-PATFZZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-10A-01D	DNA	EFO	SRS301393	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-10A-01D A22714 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22714	SRX535859	"WGS analysis of normal sample TARGET-52-PATFZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PATFZZ-10A-01D A22714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22714_3_lanes_dupsFlagged.bam	SRR1276157	@dbgap@:reads/SRP012005/SRS301393/SRX535859/SRR1276157/SRR1276157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFZZ-10A-01D.fusion.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-10A-01D	DNA	EFO	SRS301393	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-10A-01D A22714 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22714	SRX535859	"WGS analysis of normal sample TARGET-52-PATFZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PATFZZ-10A-01D A22714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22714_3_lanes_dupsFlagged.bam	SRR1276157	@dbgap@:reads/SRP012005/SRS301393/SRX535859/SRR1276157/SRR1276157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATFZZ-10A-01D.indel.vcf	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-10A-01D	DNA	EFO	SRS301393	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-10A-01D A22714 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22714	SRX535859	"WGS analysis of normal sample TARGET-52-PATFZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PATFZZ-10A-01D A22714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22714_3_lanes_dupsFlagged.bam	SRR1276157	@dbgap@:reads/SRP012005/SRS301393/SRX535859/SRR1276157/SRR1276157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATFZZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-10A-01D	DNA	EFO	SRS301393	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-10A-01D A22714 library	PAIRED	GENOMIC	WGS	RANDOM	333	A22714	SRX535859	"WGS analysis of normal sample TARGET-52-PATFZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-11-28	TARGET-52-PATFZZ-10A-01D A22714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22714_3_lanes_dupsFlagged.bam	SRR1276157	@dbgap@:reads/SRP012005/SRS301393/SRX535859/SRR1276157/SRR1276157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATFZZ-01A-01D_TARGET-52-PATFZZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01D	DNA	EFO	SRS301394	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01D A22731 library	PAIRED	GENOMIC	WGS	RANDOM	382	A22731	SRX539985	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-01A-01D A22731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22731_3_lanes_dupsFlagged.bam	SRR1283049	@dbgap@:reads/SRP012005/SRS301394/SRX539985/SRR1283049/SRR1283049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXEE-01A-01D.fusion.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01D	DNA	EFO	SRS301394	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01D A22731 library	PAIRED	GENOMIC	WGS	RANDOM	382	A22731	SRX539985	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-01A-01D A22731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22731_3_lanes_dupsFlagged.bam	SRR1283049	@dbgap@:reads/SRP012005/SRS301394/SRX539985/SRR1283049/SRR1283049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXEE-01A-01D.indel.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01D	DNA	EFO	SRS301394	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01D A22731 library	PAIRED	GENOMIC	WGS	RANDOM	382	A22731	SRX539985	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-01A-01D A22731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22731_3_lanes_dupsFlagged.bam	SRR1283049	@dbgap@:reads/SRP012005/SRS301394/SRX539985/SRR1283049/SRR1283049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATXEE-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01D	DNA	EFO	SRS301394	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01D A22731 library	PAIRED	GENOMIC	WGS	RANDOM	382	A22731	SRX539985	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-01A-01D A22731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22731_3_lanes_dupsFlagged.bam	SRR1283049	@dbgap@:reads/SRP012005/SRS301394/SRX539985/SRR1283049/SRR1283049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATXEE-01A-01D_TARGET-52-PATXEE-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-10A-01D	DNA	EFO	SRS301395	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-10A-01D A22732 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22732	SRX540001	"WGS analysis of normal sample TARGET-52-PATXEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-10A-01D A22732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22732_3_lanes_dupsFlagged.bam	SRR1283070	@dbgap@:reads/SRP012005/SRS301395/SRX540001/SRR1283070/SRR1283070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXEE-10A-01D.fusion.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-10A-01D	DNA	EFO	SRS301395	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-10A-01D A22732 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22732	SRX540001	"WGS analysis of normal sample TARGET-52-PATXEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-10A-01D A22732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22732_3_lanes_dupsFlagged.bam	SRR1283070	@dbgap@:reads/SRP012005/SRS301395/SRX540001/SRR1283070/SRR1283070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXEE-10A-01D.indel.vcf	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-10A-01D	DNA	EFO	SRS301395	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-10A-01D A22732 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22732	SRX540001	"WGS analysis of normal sample TARGET-52-PATXEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-10A-01D A22732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22732_3_lanes_dupsFlagged.bam	SRR1283070	@dbgap@:reads/SRP012005/SRS301395/SRX540001/SRR1283070/SRR1283070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATXEE-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-10A-01D	DNA	EFO	SRS301395	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-10A-01D A22732 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22732	SRX540001	"WGS analysis of normal sample TARGET-52-PATXEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXEE-10A-01D A22732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22732_3_lanes_dupsFlagged.bam	SRR1283070	@dbgap@:reads/SRP012005/SRS301395/SRX540001/SRR1283070/SRR1283070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATXEE-01A-01D_TARGET-52-PATXEE-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01D	DNA	EFO	SRS301396	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01D A22733 library	PAIRED	GENOMIC	WGS	RANDOM	373	A22733	SRX540000	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-01A-01D A22733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22733_3_lanes_dupsFlagged.bam	SRR1283048	@dbgap@:reads/SRP012005/SRS301396/SRX540000/SRR1283048/SRR1283048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXKA-01A-01D.fusion.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01D	DNA	EFO	SRS301396	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01D A22733 library	PAIRED	GENOMIC	WGS	RANDOM	373	A22733	SRX540000	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-01A-01D A22733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22733_3_lanes_dupsFlagged.bam	SRR1283048	@dbgap@:reads/SRP012005/SRS301396/SRX540000/SRR1283048/SRR1283048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXKA-01A-01D.indel.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01D	DNA	EFO	SRS301396	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01D A22733 library	PAIRED	GENOMIC	WGS	RANDOM	373	A22733	SRX540000	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-01A-01D A22733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22733_3_lanes_dupsFlagged.bam	SRR1283048	@dbgap@:reads/SRP012005/SRS301396/SRX540000/SRR1283048/SRR1283048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATXKA-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01D	DNA	EFO	SRS301396	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01D A22733 library	PAIRED	GENOMIC	WGS	RANDOM	373	A22733	SRX540000	"WGS analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-01A-01D A22733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22733_3_lanes_dupsFlagged.bam	SRR1283048	@dbgap@:reads/SRP012005/SRS301396/SRX540000/SRR1283048/SRR1283048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATXKA-01A-01D_TARGET-52-PATXKA-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-10A-01D	DNA	EFO	SRS301397	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-10A-01D A22734 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22734	SRX539991	"WGS analysis of normal sample TARGET-52-PATXKA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-10A-01D A22734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22734_3_lanes_dupsFlagged.bam	SRR1283058	@dbgap@:reads/SRP012005/SRS301397/SRX539991/SRR1283058/SRR1283058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXKA-10A-01D.fusion.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-10A-01D	DNA	EFO	SRS301397	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-10A-01D A22734 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22734	SRX539991	"WGS analysis of normal sample TARGET-52-PATXKA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-10A-01D A22734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22734_3_lanes_dupsFlagged.bam	SRR1283058	@dbgap@:reads/SRP012005/SRS301397/SRX539991/SRR1283058/SRR1283058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATXKA-10A-01D.indel.vcf	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-10A-01D	DNA	EFO	SRS301397	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-10A-01D A22734 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22734	SRX539991	"WGS analysis of normal sample TARGET-52-PATXKA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-10A-01D A22734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22734_3_lanes_dupsFlagged.bam	SRR1283058	@dbgap@:reads/SRP012005/SRS301397/SRX539991/SRR1283058/SRR1283058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATXKA-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-10A-01D	DNA	EFO	SRS301397	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-10A-01D A22734 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22734	SRX539991	"WGS analysis of normal sample TARGET-52-PATXKA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-17	TARGET-52-PATXKA-10A-01D A22734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22734_3_lanes_dupsFlagged.bam	SRR1283058	@dbgap@:reads/SRP012005/SRS301397/SRX539991/SRR1283058/SRR1283058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PATXKA-01A-01D_TARGET-52-PATXKA-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PATYUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PATYUA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATYUA-01A-01D	DNA	EFO	SRS924758	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATYUA-01A-01D A47577 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47577	SRX1012964	"WGS analysis of rhabdoid tumor sample TARGET-52-PATYUA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PATYUA-01A-01D A47577 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47577_2_lanes_dupsFlagged.bam	SRR2001386	@dbgap@:reads/SRP012005/SRS924758/SRX1012964/SRR2001386/SRR2001386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATYUA-01A-01D.fusion.vcf	3
TARGET-52-PATYUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PATYUA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATYUA-01A-01D	DNA	EFO	SRS924758	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATYUA-01A-01D A47577 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47577	SRX1012964	"WGS analysis of rhabdoid tumor sample TARGET-52-PATYUA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PATYUA-01A-01D A47577 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47577_2_lanes_dupsFlagged.bam	SRR2001386	@dbgap@:reads/SRP012005/SRS924758/SRX1012964/SRR2001386/SRR2001386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PATYUA-01A-01D.indel.vcf	3
TARGET-52-PATYUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PATYUA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATYUA-01A-01D	DNA	EFO	SRS924758	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATYUA-01A-01D A47577 library	PAIRED	GENOMIC	WGS	RANDOM	515	A47577	SRX1012964	"WGS analysis of rhabdoid tumor sample TARGET-52-PATYUA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PATYUA-01A-01D A47577 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47577_2_lanes_dupsFlagged.bam	SRR2001386	@dbgap@:reads/SRP012005/SRS924758/SRX1012964/SRR2001386/SRR2001386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PATYUA-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01D	DNA	EFO	SRS605550	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01D A22755 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22755	SRX540529	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-01A-01D A22755 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22755_3_lanes_dupsFlagged.bam	SRR1283671	@dbgap@:reads/SRP012005/SRS605550/SRX540529/SRR1283671/SRR1283671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUCGJ-01A-01D.fusion.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01D	DNA	EFO	SRS605550	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01D A22755 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22755	SRX540529	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-01A-01D A22755 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22755_3_lanes_dupsFlagged.bam	SRR1283671	@dbgap@:reads/SRP012005/SRS605550/SRX540529/SRR1283671/SRR1283671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUCGJ-01A-01D.indel.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01D	DNA	EFO	SRS605550	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01D A22755 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22755	SRX540529	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-01A-01D A22755 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22755_3_lanes_dupsFlagged.bam	SRR1283671	@dbgap@:reads/SRP012005/SRS605550/SRX540529/SRR1283671/SRR1283671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUCGJ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01D	DNA	EFO	SRS605550	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01D A22755 library	PAIRED	GENOMIC	WGS	RANDOM	325	A22755	SRX540529	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-01A-01D A22755 run	sequencing assay	EFO	199	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22755_3_lanes_dupsFlagged.bam	SRR1283671	@dbgap@:reads/SRP012005/SRS605550/SRX540529/SRR1283671/SRR1283671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUCGJ-01A-01D_TARGET-52-PAUCGJ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-10A-01D	DNA	EFO	SRS605549	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-10A-01D A22756 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22756	SRX540532	"WGS analysis of normal sample TARGET-52-PAUCGJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-10A-01D A22756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22756_3_lanes_dupsFlagged.bam	SRR1283694	@dbgap@:reads/SRP012005/SRS605549/SRX540532/SRR1283694/SRR1283694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUCGJ-10A-01D.fusion.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-10A-01D	DNA	EFO	SRS605549	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-10A-01D A22756 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22756	SRX540532	"WGS analysis of normal sample TARGET-52-PAUCGJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-10A-01D A22756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22756_3_lanes_dupsFlagged.bam	SRR1283694	@dbgap@:reads/SRP012005/SRS605549/SRX540532/SRR1283694/SRR1283694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUCGJ-10A-01D.indel.vcf	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-10A-01D	DNA	EFO	SRS605549	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-10A-01D A22756 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22756	SRX540532	"WGS analysis of normal sample TARGET-52-PAUCGJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-10A-01D A22756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22756_3_lanes_dupsFlagged.bam	SRR1283694	@dbgap@:reads/SRP012005/SRS605549/SRX540532/SRR1283694/SRR1283694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUCGJ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-10A-01D	DNA	EFO	SRS605549	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-10A-01D A22756 library	PAIRED	GENOMIC	WGS	RANDOM	341	A22756	SRX540532	"WGS analysis of normal sample TARGET-52-PAUCGJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUCGJ-10A-01D A22756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22756_3_lanes_dupsFlagged.bam	SRR1283694	@dbgap@:reads/SRP012005/SRS605549/SRX540532/SRR1283694/SRR1283694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUCGJ-01A-01D_TARGET-52-PAUCGJ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A22757 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22757	SRX540535	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-01A-01D A22757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22757_3_lanes_dupsFlagged.bam	SRR1283684	@dbgap@:reads/SRP012005/SRS605553/SRX540535/SRR1283684/SRR1283684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUDPV-01A-01D.fusion.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A22757 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22757	SRX540535	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-01A-01D A22757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22757_3_lanes_dupsFlagged.bam	SRR1283684	@dbgap@:reads/SRP012005/SRS605553/SRX540535/SRR1283684/SRR1283684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUDPV-01A-01D.indel.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A22757 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22757	SRX540535	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-01A-01D A22757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22757_3_lanes_dupsFlagged.bam	SRR1283684	@dbgap@:reads/SRP012005/SRS605553/SRX540535/SRR1283684/SRR1283684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUDPV-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A22757 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22757	SRX540535	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-01A-01D A22757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22757_3_lanes_dupsFlagged.bam	SRR1283684	@dbgap@:reads/SRP012005/SRS605553/SRX540535/SRR1283684/SRR1283684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUDPV-01A-01D.format_1.2.dna_tumor.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A22757 library	PAIRED	GENOMIC	WGS	RANDOM	329	A22757	SRX540535	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-01A-01D A22757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22757_3_lanes_dupsFlagged.bam	SRR1283684	@dbgap@:reads/SRP012005/SRS605553/SRX540535/SRR1283684/SRR1283684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUDPV-01A-01D_TARGET-52-PAUDPV-11A-01D.format_1.2.somatic.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01D	DNA	EFO	SRS605548	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01D A22758 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22758	SRX540528	"WGS analysis of normal sample TARGET-52-PAUDPV-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-11A-01D A22758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22758_3_lanes_dupsFlagged.bam	SRR1283677	@dbgap@:reads/SRP012005/SRS605548/SRX540528/SRR1283677/SRR1283677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUDPV-11A-01D.fusion.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01D	DNA	EFO	SRS605548	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01D A22758 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22758	SRX540528	"WGS analysis of normal sample TARGET-52-PAUDPV-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-11A-01D A22758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22758_3_lanes_dupsFlagged.bam	SRR1283677	@dbgap@:reads/SRP012005/SRS605548/SRX540528/SRR1283677/SRR1283677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUDPV-11A-01D.indel.vcf	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01D	DNA	EFO	SRS605548	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01D A22758 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22758	SRX540528	"WGS analysis of normal sample TARGET-52-PAUDPV-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-11A-01D A22758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22758_3_lanes_dupsFlagged.bam	SRR1283677	@dbgap@:reads/SRP012005/SRS605548/SRX540528/SRR1283677/SRR1283677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUDPV-11A-01D.format_1.2.dna_normal.maf.txt	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-11A-01D	DNA	EFO	SRS605548	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-11A-01D A22758 library	PAIRED	GENOMIC	WGS	RANDOM	330	A22758	SRX540528	"WGS analysis of normal sample TARGET-52-PAUDPV-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUDPV-11A-01D A22758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22758_3_lanes_dupsFlagged.bam	SRR1283677	@dbgap@:reads/SRP012005/SRS605548/SRX540528/SRR1283677/SRR1283677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUDPV-01A-01D_TARGET-52-PAUDPV-11A-01D.format_1.2.somatic.maf.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01D	DNA	EFO	SRS605545	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01D A22759 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22759	SRX540525	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-01A-01D A22759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22759_3_lanes_dupsFlagged.bam	SRR1283681	@dbgap@:reads/SRP012005/SRS605545/SRX540525/SRR1283681/SRR1283681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUEKW-01A-01D.fusion.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01D	DNA	EFO	SRS605545	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01D A22759 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22759	SRX540525	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-01A-01D A22759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22759_3_lanes_dupsFlagged.bam	SRR1283681	@dbgap@:reads/SRP012005/SRS605545/SRX540525/SRR1283681/SRR1283681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUEKW-01A-01D.indel.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01D	DNA	EFO	SRS605545	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01D A22759 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22759	SRX540525	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-01A-01D A22759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22759_3_lanes_dupsFlagged.bam	SRR1283681	@dbgap@:reads/SRP012005/SRS605545/SRX540525/SRR1283681/SRR1283681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUEKW-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01D	DNA	EFO	SRS605545	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01D A22759 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22759	SRX540525	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-01A-01D A22759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22759_3_lanes_dupsFlagged.bam	SRR1283681	@dbgap@:reads/SRP012005/SRS605545/SRX540525/SRR1283681/SRR1283681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUEKW-01A-01D_TARGET-52-PAUEKW-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-10A-01D	DNA	EFO	SRS605540	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-10A-01D A22760 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22760	SRX540518	"WGS analysis of normal sample TARGET-52-PAUEKW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-10A-01D A22760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22760_3_lanes_dupsFlagged.bam	SRR1283688	@dbgap@:reads/SRP012005/SRS605540/SRX540518/SRR1283688/SRR1283688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUEKW-10A-01D.fusion.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-10A-01D	DNA	EFO	SRS605540	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-10A-01D A22760 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22760	SRX540518	"WGS analysis of normal sample TARGET-52-PAUEKW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-10A-01D A22760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22760_3_lanes_dupsFlagged.bam	SRR1283688	@dbgap@:reads/SRP012005/SRS605540/SRX540518/SRR1283688/SRR1283688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUEKW-10A-01D.indel.vcf	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-10A-01D	DNA	EFO	SRS605540	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-10A-01D A22760 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22760	SRX540518	"WGS analysis of normal sample TARGET-52-PAUEKW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-10A-01D A22760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22760_3_lanes_dupsFlagged.bam	SRR1283688	@dbgap@:reads/SRP012005/SRS605540/SRX540518/SRR1283688/SRR1283688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUEKW-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-10A-01D	DNA	EFO	SRS605540	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-10A-01D A22760 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22760	SRX540518	"WGS analysis of normal sample TARGET-52-PAUEKW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUEKW-10A-01D A22760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22760_3_lanes_dupsFlagged.bam	SRR1283688	@dbgap@:reads/SRP012005/SRS605540/SRX540518/SRR1283688/SRR1283688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUEKW-01A-01D_TARGET-52-PAUEKW-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01D	DNA	EFO	SRS605535	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01D A22761 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22761	SRX540511	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-01A-01D A22761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22761_3_lanes_dupsFlagged.bam	SRR1283676	@dbgap@:reads/SRP012005/SRS605535/SRX540511/SRR1283676/SRR1283676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUFVP-01A-01D.fusion.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01D	DNA	EFO	SRS605535	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01D A22761 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22761	SRX540511	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-01A-01D A22761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22761_3_lanes_dupsFlagged.bam	SRR1283676	@dbgap@:reads/SRP012005/SRS605535/SRX540511/SRR1283676/SRR1283676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUFVP-01A-01D.indel.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01D	DNA	EFO	SRS605535	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01D A22761 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22761	SRX540511	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-01A-01D A22761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22761_3_lanes_dupsFlagged.bam	SRR1283676	@dbgap@:reads/SRP012005/SRS605535/SRX540511/SRR1283676/SRR1283676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUFVP-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01D	DNA	EFO	SRS605535	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01D A22761 library	PAIRED	GENOMIC	WGS	RANDOM	328	A22761	SRX540511	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-01A-01D A22761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22761_3_lanes_dupsFlagged.bam	SRR1283676	@dbgap@:reads/SRP012005/SRS605535/SRX540511/SRR1283676/SRR1283676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUFVP-01A-01D_TARGET-52-PAUFVP-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-11A-01D	DNA	EFO	SRS605534	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-11A-01D A22762 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22762	SRX540510	"WGS analysis of normal sample TARGET-52-PAUFVP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-11A-01D A22762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22762_3_lanes_dupsFlagged.bam	SRR1283679	@dbgap@:reads/SRP012005/SRS605534/SRX540510/SRR1283679/SRR1283679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUFVP-11A-01D.fusion.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-11A-01D	DNA	EFO	SRS605534	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-11A-01D A22762 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22762	SRX540510	"WGS analysis of normal sample TARGET-52-PAUFVP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-11A-01D A22762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22762_3_lanes_dupsFlagged.bam	SRR1283679	@dbgap@:reads/SRP012005/SRS605534/SRX540510/SRR1283679/SRR1283679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUFVP-11A-01D.indel.vcf	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-11A-01D	DNA	EFO	SRS605534	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-11A-01D A22762 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22762	SRX540510	"WGS analysis of normal sample TARGET-52-PAUFVP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-11A-01D A22762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22762_3_lanes_dupsFlagged.bam	SRR1283679	@dbgap@:reads/SRP012005/SRS605534/SRX540510/SRR1283679/SRR1283679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUFVP-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-11A-01D	DNA	EFO	SRS605534	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-11A-01D A22762 library	PAIRED	GENOMIC	WGS	RANDOM	340	A22762	SRX540510	"WGS analysis of normal sample TARGET-52-PAUFVP-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-19	TARGET-52-PAUFVP-11A-01D A22762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22762_3_lanes_dupsFlagged.bam	SRR1283679	@dbgap@:reads/SRP012005/SRS605534/SRX540510/SRR1283679/SRR1283679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUFVP-01A-01D_TARGET-52-PAUFVP-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01D	DNA	EFO	SRS605551	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01D A22763 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22763	SRX540533	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-01A-01D A22763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22763_3_lanes_dupsFlagged.bam	SRR1283674	@dbgap@:reads/SRP012005/SRS605551/SRX540533/SRR1283674/SRR1283674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUGYZ-01A-01D.fusion.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01D	DNA	EFO	SRS605551	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01D A22763 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22763	SRX540533	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-01A-01D A22763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22763_3_lanes_dupsFlagged.bam	SRR1283674	@dbgap@:reads/SRP012005/SRS605551/SRX540533/SRR1283674/SRR1283674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUGYZ-01A-01D.indel.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01D	DNA	EFO	SRS605551	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01D A22763 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22763	SRX540533	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-01A-01D A22763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22763_3_lanes_dupsFlagged.bam	SRR1283674	@dbgap@:reads/SRP012005/SRS605551/SRX540533/SRR1283674/SRR1283674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUGYZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01D	DNA	EFO	SRS605551	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01D A22763 library	PAIRED	GENOMIC	WGS	RANDOM	334	A22763	SRX540533	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-01A-01D A22763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22763_3_lanes_dupsFlagged.bam	SRR1283674	@dbgap@:reads/SRP012005/SRS605551/SRX540533/SRR1283674/SRR1283674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUGYZ-01A-01D_TARGET-52-PAUGYZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-10A-01D	DNA	EFO	SRS605541	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-10A-01D A22764 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22764	SRX540520	"WGS analysis of normal sample TARGET-52-PAUGYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-10A-01D A22764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22764_3_lanes_dupsFlagged.bam	SRR1283693	@dbgap@:reads/SRP012005/SRS605541/SRX540520/SRR1283693/SRR1283693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUGYZ-10A-01D.fusion.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-10A-01D	DNA	EFO	SRS605541	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-10A-01D A22764 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22764	SRX540520	"WGS analysis of normal sample TARGET-52-PAUGYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-10A-01D A22764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22764_3_lanes_dupsFlagged.bam	SRR1283693	@dbgap@:reads/SRP012005/SRS605541/SRX540520/SRR1283693/SRR1283693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUGYZ-10A-01D.indel.vcf	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-10A-01D	DNA	EFO	SRS605541	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-10A-01D A22764 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22764	SRX540520	"WGS analysis of normal sample TARGET-52-PAUGYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-10A-01D A22764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22764_3_lanes_dupsFlagged.bam	SRR1283693	@dbgap@:reads/SRP012005/SRS605541/SRX540520/SRR1283693/SRR1283693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUGYZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-10A-01D	DNA	EFO	SRS605541	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-10A-01D A22764 library	PAIRED	GENOMIC	WGS	RANDOM	372	A22764	SRX540520	"WGS analysis of normal sample TARGET-52-PAUGYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUGYZ-10A-01D A22764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22764_3_lanes_dupsFlagged.bam	SRR1283693	@dbgap@:reads/SRP012005/SRS605541/SRX540520/SRR1283693/SRR1283693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUGYZ-01A-01D_TARGET-52-PAUGYZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01D	DNA	EFO	SRS605538	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01D A22765 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22765	SRX540517	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-01A-01D A22765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22765_3_lanes_dupsFlagged.bam	SRR1283687	@dbgap@:reads/SRP012005/SRS605538/SRX540517/SRR1283687/SRR1283687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUHAZ-01A-01D.fusion.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01D	DNA	EFO	SRS605538	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01D A22765 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22765	SRX540517	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-01A-01D A22765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22765_3_lanes_dupsFlagged.bam	SRR1283687	@dbgap@:reads/SRP012005/SRS605538/SRX540517/SRR1283687/SRR1283687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUHAZ-01A-01D.indel.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01D	DNA	EFO	SRS605538	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01D A22765 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22765	SRX540517	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-01A-01D A22765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22765_3_lanes_dupsFlagged.bam	SRR1283687	@dbgap@:reads/SRP012005/SRS605538/SRX540517/SRR1283687/SRR1283687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUHAZ-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01D	DNA	EFO	SRS605538	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01D A22765 library	PAIRED	GENOMIC	WGS	RANDOM	332	A22765	SRX540517	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-01A-01D A22765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22765_3_lanes_dupsFlagged.bam	SRR1283687	@dbgap@:reads/SRP012005/SRS605538/SRX540517/SRR1283687/SRR1283687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUHAZ-01A-01D_TARGET-52-PAUHAZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-10A-01D	DNA	EFO	SRS605532	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-10A-01D A22766 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22766	SRX540508	"WGS analysis of normal sample TARGET-52-PAUHAZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-10A-01D A22766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22766_3_lanes_dupsFlagged.bam	SRR1283698	@dbgap@:reads/SRP012005/SRS605532/SRX540508/SRR1283698/SRR1283698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUHAZ-10A-01D.fusion.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-10A-01D	DNA	EFO	SRS605532	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-10A-01D A22766 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22766	SRX540508	"WGS analysis of normal sample TARGET-52-PAUHAZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-10A-01D A22766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22766_3_lanes_dupsFlagged.bam	SRR1283698	@dbgap@:reads/SRP012005/SRS605532/SRX540508/SRR1283698/SRR1283698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUHAZ-10A-01D.indel.vcf	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-10A-01D	DNA	EFO	SRS605532	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-10A-01D A22766 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22766	SRX540508	"WGS analysis of normal sample TARGET-52-PAUHAZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-10A-01D A22766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22766_3_lanes_dupsFlagged.bam	SRR1283698	@dbgap@:reads/SRP012005/SRS605532/SRX540508/SRR1283698/SRR1283698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUHAZ-10A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-10A-01D	DNA	EFO	SRS605532	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-10A-01D A22766 library	PAIRED	GENOMIC	WGS	RANDOM	347	A22766	SRX540508	"WGS analysis of normal sample TARGET-52-PAUHAZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUHAZ-10A-01D A22766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22766_3_lanes_dupsFlagged.bam	SRR1283698	@dbgap@:reads/SRP012005/SRS605532/SRX540508/SRR1283698/SRR1283698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUHAZ-01A-01D_TARGET-52-PAUHAZ-10A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01D	DNA	EFO	SRS605542	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01D A22767 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22767	SRX540521	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-01A-01D A22767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22767_3_lanes_dupsFlagged.bam	SRR1283690	@dbgap@:reads/SRP012005/SRS605542/SRX540521/SRR1283690/SRR1283690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUNPA-01A-01D.fusion.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01D	DNA	EFO	SRS605542	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01D A22767 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22767	SRX540521	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-01A-01D A22767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22767_3_lanes_dupsFlagged.bam	SRR1283690	@dbgap@:reads/SRP012005/SRS605542/SRX540521/SRR1283690/SRR1283690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUNPA-01A-01D.indel.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01D	DNA	EFO	SRS605542	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01D A22767 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22767	SRX540521	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-01A-01D A22767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22767_3_lanes_dupsFlagged.bam	SRR1283690	@dbgap@:reads/SRP012005/SRS605542/SRX540521/SRR1283690/SRR1283690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUNPA-01A-01D.format_1.1.dna_tumor.maf.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01D	DNA	EFO	SRS605542	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01D A22767 library	PAIRED	GENOMIC	WGS	RANDOM	350	A22767	SRX540521	"WGS analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-01A-01D A22767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22767_3_lanes_dupsFlagged.bam	SRR1283690	@dbgap@:reads/SRP012005/SRS605542/SRX540521/SRR1283690/SRR1283690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUNPA-01A-01D_TARGET-52-PAUNPA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-11A-01D	DNA	EFO	SRS605544	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-11A-01D A22768 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22768	SRX540524	"WGS analysis of normal sample TARGET-52-PAUNPA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-11A-01D A22768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22768_3_lanes_dupsFlagged.bam	SRR1283695	@dbgap@:reads/SRP012005/SRS605544/SRX540524/SRR1283695/SRR1283695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUNPA-11A-01D.fusion.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-11A-01D	DNA	EFO	SRS605544	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-11A-01D A22768 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22768	SRX540524	"WGS analysis of normal sample TARGET-52-PAUNPA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-11A-01D A22768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22768_3_lanes_dupsFlagged.bam	SRR1283695	@dbgap@:reads/SRP012005/SRS605544/SRX540524/SRR1283695/SRR1283695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAUNPA-11A-01D.indel.vcf	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-11A-01D	DNA	EFO	SRS605544	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-11A-01D A22768 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22768	SRX540524	"WGS analysis of normal sample TARGET-52-PAUNPA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-11A-01D A22768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22768_3_lanes_dupsFlagged.bam	SRR1283695	@dbgap@:reads/SRP012005/SRS605544/SRX540524/SRR1283695/SRR1283695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAUNPA-11A-01D.format_1.1.dna_normal.maf.txt	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-11A-01D	DNA	EFO	SRS605544	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-11A-01D A22768 library	PAIRED	GENOMIC	WGS	RANDOM	349	A22768	SRX540524	"WGS analysis of normal sample TARGET-52-PAUNPA-11A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2012-10-23	TARGET-52-PAUNPA-11A-01D A22768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A22768_3_lanes_dupsFlagged.bam	SRR1283695	@dbgap@:reads/SRP012005/SRS605544/SRX540524/SRR1283695/SRR1283695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAUNPA-01A-01D_TARGET-52-PAUNPA-11A-01D.format_1.1.somatic.maf.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01D	DNA	EFO	SRS924751	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01D A47564 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47564	SRX1012972	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVCKS-01A-01D A47564 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47564_2_lanes_dupsFlagged.bam	SRR2001381	@dbgap@:reads/SRP012005/SRS924751/SRX1012972/SRR2001381/SRR2001381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVCKS-01A-01D.fusion.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01D	DNA	EFO	SRS924751	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01D A47564 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47564	SRX1012972	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVCKS-01A-01D A47564 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47564_2_lanes_dupsFlagged.bam	SRR2001381	@dbgap@:reads/SRP012005/SRS924751/SRX1012972/SRR2001381/SRR2001381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVCKS-01A-01D.indel.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01D	DNA	EFO	SRS924751	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01D A47564 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47564	SRX1012972	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVCKS-01A-01D A47564 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47564_2_lanes_dupsFlagged.bam	SRR2001381	@dbgap@:reads/SRP012005/SRS924751/SRX1012972/SRR2001381/SRR2001381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVCKS-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01D	DNA	EFO	SRS924751	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01D A47564 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47564	SRX1012972	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVCKS-01A-01D A47564 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47564_2_lanes_dupsFlagged.bam	SRR2001381	@dbgap@:reads/SRP012005/SRS924751/SRX1012972/SRR2001381/SRR2001381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVCKS-01A-01D_TARGET-52-PAVCKS-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-11A-01D	DNA	EFO	SRS924750	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-11A-01D A47593 library	PAIRED	GENOMIC	WGS	RANDOM	509	A47593	SRX1012973	"WGS analysis of normal sample TARGET-52-PAVCKS-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVCKS-11A-01D A47593 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47593_2_lanes_dupsFlagged.bam	SRR2001383	@dbgap@:reads/SRP012005/SRS924750/SRX1012973/SRR2001383/SRR2001383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVCKS-11A-01D.fusion.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-11A-01D	DNA	EFO	SRS924750	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-11A-01D A47593 library	PAIRED	GENOMIC	WGS	RANDOM	509	A47593	SRX1012973	"WGS analysis of normal sample TARGET-52-PAVCKS-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVCKS-11A-01D A47593 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47593_2_lanes_dupsFlagged.bam	SRR2001383	@dbgap@:reads/SRP012005/SRS924750/SRX1012973/SRR2001383/SRR2001383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVCKS-11A-01D.indel.vcf	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-11A-01D	DNA	EFO	SRS924750	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-11A-01D A47593 library	PAIRED	GENOMIC	WGS	RANDOM	509	A47593	SRX1012973	"WGS analysis of normal sample TARGET-52-PAVCKS-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVCKS-11A-01D A47593 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47593_2_lanes_dupsFlagged.bam	SRR2001383	@dbgap@:reads/SRP012005/SRS924750/SRX1012973/SRR2001383/SRR2001383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVCKS-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-11A-01D	DNA	EFO	SRS924750	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-11A-01D A47593 library	PAIRED	GENOMIC	WGS	RANDOM	509	A47593	SRX1012973	"WGS analysis of normal sample TARGET-52-PAVCKS-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVCKS-11A-01D A47593 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47593_2_lanes_dupsFlagged.bam	SRR2001383	@dbgap@:reads/SRP012005/SRS924750/SRX1012973/SRR2001383/SRR2001383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVCKS-01A-01D_TARGET-52-PAVCKS-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01D	DNA	EFO	SRS924762	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01D A47578 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47578	SRX1012960	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVDPR-01A-01D A47578 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47578_2_lanes_dupsFlagged.bam	SRR2001371	@dbgap@:reads/SRP012005/SRS924762/SRX1012960/SRR2001371/SRR2001371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVDPR-01A-01D.fusion.vcf	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01D	DNA	EFO	SRS924762	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01D A47578 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47578	SRX1012960	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVDPR-01A-01D A47578 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47578_2_lanes_dupsFlagged.bam	SRR2001371	@dbgap@:reads/SRP012005/SRS924762/SRX1012960/SRR2001371/SRR2001371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVDPR-01A-01D.indel.vcf	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01D	DNA	EFO	SRS924762	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01D A47578 library	PAIRED	GENOMIC	WGS	RANDOM	520	A47578	SRX1012960	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVDPR-01A-01D A47578 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47578_2_lanes_dupsFlagged.bam	SRR2001371	@dbgap@:reads/SRP012005/SRS924762/SRX1012960/SRR2001371/SRR2001371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVDPR-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01D	DNA	EFO	SRS924753	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01D A47565 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47565	SRX1012970	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVITI-01A-01D A47565 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47565_2_lanes_dupsFlagged.bam	SRR2001384	@dbgap@:reads/SRP012005/SRS924753/SRX1012970/SRR2001384/SRR2001384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-01A-01D.fusion.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01D	DNA	EFO	SRS924753	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01D A47565 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47565	SRX1012970	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVITI-01A-01D A47565 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47565_2_lanes_dupsFlagged.bam	SRR2001384	@dbgap@:reads/SRP012005/SRS924753/SRX1012970/SRR2001384/SRR2001384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-01A-01D.indel.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01D	DNA	EFO	SRS924753	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01D A47565 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47565	SRX1012970	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVITI-01A-01D A47565 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47565_2_lanes_dupsFlagged.bam	SRR2001384	@dbgap@:reads/SRP012005/SRS924753/SRX1012970/SRR2001384/SRR2001384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVITI-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01D	DNA	EFO	SRS924753	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01D A47565 library	PAIRED	GENOMIC	WGS	RANDOM	511	A47565	SRX1012970	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAVITI-01A-01D A47565 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47565_2_lanes_dupsFlagged.bam	SRR2001384	@dbgap@:reads/SRP012005/SRS924753/SRX1012970/SRR2001384/SRR2001384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVITI-01A-01D_TARGET-52-PAVITI-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-10A-01D	DNA	EFO	SRS924759	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-10A-01D A47595 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47595	SRX1012963	"WGS analysis of normal sample TARGET-52-PAVITI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-10A-01D A47595 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47595_2_lanes_dupsFlagged.bam	SRR2001376	@dbgap@:reads/SRP012005/SRS924759/SRX1012963/SRR2001376/SRR2001376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-10A-01D.fusion.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-10A-01D	DNA	EFO	SRS924759	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-10A-01D A47595 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47595	SRX1012963	"WGS analysis of normal sample TARGET-52-PAVITI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-10A-01D A47595 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47595_2_lanes_dupsFlagged.bam	SRR2001376	@dbgap@:reads/SRP012005/SRS924759/SRX1012963/SRR2001376/SRR2001376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-10A-01D.indel.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-10A-01D	DNA	EFO	SRS924759	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-10A-01D A47595 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47595	SRX1012963	"WGS analysis of normal sample TARGET-52-PAVITI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-10A-01D A47595 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47595_2_lanes_dupsFlagged.bam	SRR2001376	@dbgap@:reads/SRP012005/SRS924759/SRX1012963/SRR2001376/SRR2001376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVITI-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-10A-01D	DNA	EFO	SRS924759	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-10A-01D A47595 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47595	SRX1012963	"WGS analysis of normal sample TARGET-52-PAVITI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-10A-01D A47595 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47595_2_lanes_dupsFlagged.bam	SRR2001376	@dbgap@:reads/SRP012005/SRS924759/SRX1012963/SRR2001376/SRR2001376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVITI-01A-01D_TARGET-52-PAVITI-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-01D	DNA	EFO	SRS924754	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-01D A47594 library	PAIRED	GENOMIC	WGS	RANDOM	493	A47594	SRX1012968	"WGS analysis of normal sample TARGET-52-PAVITI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-11A-01D A47594 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47594_2_lanes_dupsFlagged.bam	SRR2001374	@dbgap@:reads/SRP012005/SRS924754/SRX1012968/SRR2001374/SRR2001374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-11A-01D.fusion.vcf	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-01D	DNA	EFO	SRS924754	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-01D A47594 library	PAIRED	GENOMIC	WGS	RANDOM	493	A47594	SRX1012968	"WGS analysis of normal sample TARGET-52-PAVITI-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-11A-01D A47594 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47594_2_lanes_dupsFlagged.bam	SRR2001374	@dbgap@:reads/SRP012005/SRS924754/SRX1012968/SRR2001374/SRR2001374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVITI-11A-01D.indel.vcf	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01D	DNA	EFO	SRS924794	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01D A47579 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47579	SRX1013001	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVVIT-01A-01D A47579 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47579_2_lanes_dupsFlagged.bam	SRR2001423	@dbgap@:reads/SRP012005/SRS924794/SRX1013001/SRR2001423/SRR2001423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVVIT-01A-01D.fusion.vcf	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01D	DNA	EFO	SRS924794	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01D A47579 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47579	SRX1013001	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVVIT-01A-01D A47579 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47579_2_lanes_dupsFlagged.bam	SRR2001423	@dbgap@:reads/SRP012005/SRS924794/SRX1013001/SRR2001423/SRR2001423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVVIT-01A-01D.indel.vcf	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01D	DNA	EFO	SRS924794	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01D A47579 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47579	SRX1013001	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-18	TARGET-52-PAVVIT-01A-01D A47579 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47579_2_lanes_dupsFlagged.bam	SRR2001423	@dbgap@:reads/SRP012005/SRS924794/SRX1013001/SRR2001423/SRR2001423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVVIT-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-01A-01D	DNA	EFO	SRS924796	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-01A-01D A47590 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47590	SRX1012999	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYDM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYDM-01A-01D A47590 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47590_2_lanes_dupsFlagged.bam	SRR2001404	@dbgap@:reads/SRP012005/SRS924796/SRX1012999/SRR2001404/SRR2001404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYDM-01A-01D.fusion.vcf	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-01A-01D	DNA	EFO	SRS924796	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-01A-01D A47590 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47590	SRX1012999	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYDM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYDM-01A-01D A47590 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47590_2_lanes_dupsFlagged.bam	SRR2001404	@dbgap@:reads/SRP012005/SRS924796/SRX1012999/SRR2001404/SRR2001404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYDM-01A-01D.indel.vcf	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-01A-01D	DNA	EFO	SRS924796	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-01A-01D A47590 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47590	SRX1012999	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYDM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYDM-01A-01D A47590 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47590_2_lanes_dupsFlagged.bam	SRR2001404	@dbgap@:reads/SRP012005/SRS924796/SRX1012999/SRR2001404/SRR2001404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVYDM-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-01A-01D	DNA	EFO	SRS924796	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-01A-01D A47590 library	PAIRED	GENOMIC	WGS	RANDOM	518	A47590	SRX1012999	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYDM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYDM-01A-01D A47590 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47590_2_lanes_dupsFlagged.bam	SRR2001404	@dbgap@:reads/SRP012005/SRS924796/SRX1012999/SRR2001404/SRR2001404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVYDM-01A-01D_TARGET-52-PAVYDM-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-11A-01D	DNA	EFO	SRS924786	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-11A-01D A47607 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47607	SRX1013009	"WGS analysis of normal sample TARGET-52-PAVYDM-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVYDM-11A-01D A47607 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47607_2_lanes_dupsFlagged.bam	SRR2001410	@dbgap@:reads/SRP012005/SRS924786/SRX1013009/SRR2001410/SRR2001410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYDM-11A-01D.fusion.vcf	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-11A-01D	DNA	EFO	SRS924786	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-11A-01D A47607 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47607	SRX1013009	"WGS analysis of normal sample TARGET-52-PAVYDM-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVYDM-11A-01D A47607 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47607_2_lanes_dupsFlagged.bam	SRR2001410	@dbgap@:reads/SRP012005/SRS924786/SRX1013009/SRR2001410/SRR2001410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYDM-11A-01D.indel.vcf	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-11A-01D	DNA	EFO	SRS924786	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-11A-01D A47607 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47607	SRX1013009	"WGS analysis of normal sample TARGET-52-PAVYDM-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVYDM-11A-01D A47607 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47607_2_lanes_dupsFlagged.bam	SRR2001410	@dbgap@:reads/SRP012005/SRS924786/SRX1013009/SRR2001410/SRR2001410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVYDM-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-11A-01D	DNA	EFO	SRS924786	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-11A-01D A47607 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47607	SRX1013009	"WGS analysis of normal sample TARGET-52-PAVYDM-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAVYDM-11A-01D A47607 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47607_2_lanes_dupsFlagged.bam	SRR2001410	@dbgap@:reads/SRP012005/SRS924786/SRX1013009/SRR2001410/SRR2001410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVYDM-01A-01D_TARGET-52-PAVYDM-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-01D	DNA	EFO	SRS924780	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-01D A47591 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47591	SRX1013015	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYKD-01A-01D A47591 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47591_2_lanes_dupsFlagged.bam	SRR2001405	@dbgap@:reads/SRP012005/SRS924780/SRX1013015/SRR2001405/SRR2001405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYKD-01A-01D.fusion.vcf	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-01D	DNA	EFO	SRS924780	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-01D A47591 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47591	SRX1013015	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYKD-01A-01D A47591 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47591_2_lanes_dupsFlagged.bam	SRR2001405	@dbgap@:reads/SRP012005/SRS924780/SRX1013015/SRR2001405/SRR2001405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYKD-01A-01D.indel.vcf	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-01D	DNA	EFO	SRS924780	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-01D A47591 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47591	SRX1013015	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYKD-01A-01D A47591 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47591_2_lanes_dupsFlagged.bam	SRR2001405	@dbgap@:reads/SRP012005/SRS924780/SRX1013015/SRR2001405/SRR2001405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVYKD-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-01D	DNA	EFO	SRS924780	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-01D A47591 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47591	SRX1013015	"WGS analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAVYKD-01A-01D A47591 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47591_2_lanes_dupsFlagged.bam	SRR2001405	@dbgap@:reads/SRP012005/SRS924780/SRX1013015/SRR2001405/SRR2001405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVYKD-01A-01D_TARGET-52-PAVYKD-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-10A-01D	DNA	EFO	SRS924777	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-10A-01D A47608 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47608	SRX1013018	"WGS analysis of normal sample TARGET-52-PAVYKD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAVYKD-10A-01D A47608 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47608_2_lanes_dupsFlagged.bam	SRR2001407	@dbgap@:reads/SRP012005/SRS924777/SRX1013018/SRR2001407/SRR2001407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYKD-10A-01D.fusion.vcf	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-10A-01D	DNA	EFO	SRS924777	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-10A-01D A47608 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47608	SRX1013018	"WGS analysis of normal sample TARGET-52-PAVYKD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAVYKD-10A-01D A47608 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47608_2_lanes_dupsFlagged.bam	SRR2001407	@dbgap@:reads/SRP012005/SRS924777/SRX1013018/SRR2001407/SRR2001407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAVYKD-10A-01D.indel.vcf	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-10A-01D	DNA	EFO	SRS924777	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-10A-01D A47608 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47608	SRX1013018	"WGS analysis of normal sample TARGET-52-PAVYKD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAVYKD-10A-01D A47608 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47608_2_lanes_dupsFlagged.bam	SRR2001407	@dbgap@:reads/SRP012005/SRS924777/SRX1013018/SRR2001407/SRR2001407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAVYKD-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-10A-01D	DNA	EFO	SRS924777	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-10A-01D A47608 library	PAIRED	GENOMIC	WGS	RANDOM	506	A47608	SRX1013018	"WGS analysis of normal sample TARGET-52-PAVYKD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAVYKD-10A-01D A47608 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47608_2_lanes_dupsFlagged.bam	SRR2001407	@dbgap@:reads/SRP012005/SRS924777/SRX1013018/SRR2001407/SRR2001407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAVYKD-01A-01D_TARGET-52-PAVYKD-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-01A-01D	DNA	EFO	SRS924788	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-01A-01D A47592 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47592	SRX1013007	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWDGA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWDGA-01A-01D A47592 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47592_2_lanes_dupsFlagged.bam	SRR2001424	@dbgap@:reads/SRP012005/SRS924788/SRX1013007/SRR2001424/SRR2001424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWDGA-01A-01D.fusion.vcf	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-01A-01D	DNA	EFO	SRS924788	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-01A-01D A47592 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47592	SRX1013007	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWDGA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWDGA-01A-01D A47592 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47592_2_lanes_dupsFlagged.bam	SRR2001424	@dbgap@:reads/SRP012005/SRS924788/SRX1013007/SRR2001424/SRR2001424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWDGA-01A-01D.indel.vcf	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-01A-01D	DNA	EFO	SRS924788	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-01A-01D A47592 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47592	SRX1013007	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWDGA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWDGA-01A-01D A47592 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47592_2_lanes_dupsFlagged.bam	SRR2001424	@dbgap@:reads/SRP012005/SRS924788/SRX1013007/SRR2001424/SRR2001424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWDGA-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-01A-01D	DNA	EFO	SRS924788	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-01A-01D A47592 library	PAIRED	GENOMIC	WGS	RANDOM	502	A47592	SRX1013007	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWDGA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWDGA-01A-01D A47592 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47592_2_lanes_dupsFlagged.bam	SRR2001424	@dbgap@:reads/SRP012005/SRS924788/SRX1013007/SRR2001424/SRR2001424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWDGA-01A-01D_TARGET-52-PAWDGA-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-11A-01D	DNA	EFO	SRS924795	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-11A-01D A47609 library	PAIRED	GENOMIC	WGS	RANDOM	497	A47609	SRX1013000	"WGS analysis of normal sample TARGET-52-PAWDGA-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAWDGA-11A-01D A47609 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47609_2_lanes_dupsFlagged.bam	SRR2001425	@dbgap@:reads/SRP012005/SRS924795/SRX1013000/SRR2001425/SRR2001425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWDGA-11A-01D.fusion.vcf	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-11A-01D	DNA	EFO	SRS924795	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-11A-01D A47609 library	PAIRED	GENOMIC	WGS	RANDOM	497	A47609	SRX1013000	"WGS analysis of normal sample TARGET-52-PAWDGA-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAWDGA-11A-01D A47609 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47609_2_lanes_dupsFlagged.bam	SRR2001425	@dbgap@:reads/SRP012005/SRS924795/SRX1013000/SRR2001425/SRR2001425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWDGA-11A-01D.indel.vcf	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-11A-01D	DNA	EFO	SRS924795	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-11A-01D A47609 library	PAIRED	GENOMIC	WGS	RANDOM	497	A47609	SRX1013000	"WGS analysis of normal sample TARGET-52-PAWDGA-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAWDGA-11A-01D A47609 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47609_2_lanes_dupsFlagged.bam	SRR2001425	@dbgap@:reads/SRP012005/SRS924795/SRX1013000/SRR2001425/SRR2001425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWDGA-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-11A-01D	DNA	EFO	SRS924795	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-11A-01D A47609 library	PAIRED	GENOMIC	WGS	RANDOM	497	A47609	SRX1013000	"WGS analysis of normal sample TARGET-52-PAWDGA-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-15	TARGET-52-PAWDGA-11A-01D A47609 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47609_2_lanes_dupsFlagged.bam	SRR2001425	@dbgap@:reads/SRP012005/SRS924795/SRX1013000/SRR2001425/SRR2001425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWDGA-01A-01D_TARGET-52-PAWDGA-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01D	DNA	EFO	SRS924764	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01D A47566 library	PAIRED	GENOMIC	WGS	RANDOM	489	A47566	SRX1012957	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAWFBL-01A-01D A47566 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47566_2_lanes_dupsFlagged.bam	SRR2001367	@dbgap@:reads/SRP012005/SRS924764/SRX1012957/SRR2001367/SRR2001367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFBL-01A-01D.fusion.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01D	DNA	EFO	SRS924764	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01D A47566 library	PAIRED	GENOMIC	WGS	RANDOM	489	A47566	SRX1012957	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAWFBL-01A-01D A47566 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47566_2_lanes_dupsFlagged.bam	SRR2001367	@dbgap@:reads/SRP012005/SRS924764/SRX1012957/SRR2001367/SRR2001367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFBL-01A-01D.indel.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01D	DNA	EFO	SRS924764	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01D A47566 library	PAIRED	GENOMIC	WGS	RANDOM	489	A47566	SRX1012957	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAWFBL-01A-01D A47566 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47566_2_lanes_dupsFlagged.bam	SRR2001367	@dbgap@:reads/SRP012005/SRS924764/SRX1012957/SRR2001367/SRR2001367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWFBL-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01D	DNA	EFO	SRS924764	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01D A47566 library	PAIRED	GENOMIC	WGS	RANDOM	489	A47566	SRX1012957	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-05	TARGET-52-PAWFBL-01A-01D A47566 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47566_2_lanes_dupsFlagged.bam	SRR2001367	@dbgap@:reads/SRP012005/SRS924764/SRX1012957/SRR2001367/SRR2001367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWFBL-01A-01D_TARGET-52-PAWFBL-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-11A-01D	DNA	EFO	SRS924752	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-11A-01D A47596 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47596	SRX1012971	"WGS analysis of normal sample TARGET-52-PAWFBL-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFBL-11A-01D A47596 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47596_2_lanes_dupsFlagged.bam	SRR2001372	@dbgap@:reads/SRP012005/SRS924752/SRX1012971/SRR2001372/SRR2001372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFBL-11A-01D.fusion.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-11A-01D	DNA	EFO	SRS924752	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-11A-01D A47596 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47596	SRX1012971	"WGS analysis of normal sample TARGET-52-PAWFBL-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFBL-11A-01D A47596 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47596_2_lanes_dupsFlagged.bam	SRR2001372	@dbgap@:reads/SRP012005/SRS924752/SRX1012971/SRR2001372/SRR2001372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFBL-11A-01D.indel.vcf	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-11A-01D	DNA	EFO	SRS924752	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-11A-01D A47596 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47596	SRX1012971	"WGS analysis of normal sample TARGET-52-PAWFBL-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFBL-11A-01D A47596 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47596_2_lanes_dupsFlagged.bam	SRR2001372	@dbgap@:reads/SRP012005/SRS924752/SRX1012971/SRR2001372/SRR2001372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWFBL-11A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-11A-01D	DNA	EFO	SRS924752	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-11A-01D A47596 library	PAIRED	GENOMIC	WGS	RANDOM	510	A47596	SRX1012971	"WGS analysis of normal sample TARGET-52-PAWFBL-11A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFBL-11A-01D A47596 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47596_2_lanes_dupsFlagged.bam	SRR2001372	@dbgap@:reads/SRP012005/SRS924752/SRX1012971/SRR2001372/SRR2001372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWFBL-01A-01D_TARGET-52-PAWFBL-11A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01D	DNA	EFO	SRS924778	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01D A47580 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47580	SRX1013017	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWFWK-01A-01D A47580 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47580_2_lanes_dupsFlagged.bam	SRR2001411	@dbgap@:reads/SRP012005/SRS924778/SRX1013017/SRR2001411/SRR2001411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFWK-01A-01D.fusion.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01D	DNA	EFO	SRS924778	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01D A47580 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47580	SRX1013017	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWFWK-01A-01D A47580 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47580_2_lanes_dupsFlagged.bam	SRR2001411	@dbgap@:reads/SRP012005/SRS924778/SRX1013017/SRR2001411/SRR2001411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFWK-01A-01D.indel.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01D	DNA	EFO	SRS924778	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01D A47580 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47580	SRX1013017	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWFWK-01A-01D A47580 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47580_2_lanes_dupsFlagged.bam	SRR2001411	@dbgap@:reads/SRP012005/SRS924778/SRX1013017/SRR2001411/SRR2001411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWFWK-01A-01D.format_1.3.dna_tumor.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01D	DNA	EFO	SRS924778	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01D A47580 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47580	SRX1013017	"WGS analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-12	TARGET-52-PAWFWK-01A-01D A47580 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47580_2_lanes_dupsFlagged.bam	SRR2001411	@dbgap@:reads/SRP012005/SRS924778/SRX1013017/SRR2001411/SRR2001411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWFWK-01A-01D_TARGET-52-PAWFWK-10A-01D.format_1.3.somatic.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-10A-01D	DNA	EFO	SRS924763	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-10A-01D A47599 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47599	SRX1012959	"WGS analysis of normal sample TARGET-52-PAWFWK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFWK-10A-01D A47599 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47599_2_lanes_dupsFlagged.bam	SRR2001365	@dbgap@:reads/SRP012005/SRS924763/SRX1012959/SRR2001365/SRR2001365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFWK-10A-01D.fusion.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-10A-01D	DNA	EFO	SRS924763	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-10A-01D A47599 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47599	SRX1012959	"WGS analysis of normal sample TARGET-52-PAWFWK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFWK-10A-01D A47599 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47599_2_lanes_dupsFlagged.bam	SRR2001365	@dbgap@:reads/SRP012005/SRS924763/SRX1012959/SRR2001365/SRR2001365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-52-PAWFWK-10A-01D.indel.vcf	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-10A-01D	DNA	EFO	SRS924763	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-10A-01D A47599 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47599	SRX1012959	"WGS analysis of normal sample TARGET-52-PAWFWK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFWK-10A-01D A47599 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47599_2_lanes_dupsFlagged.bam	SRR2001365	@dbgap@:reads/SRP012005/SRS924763/SRX1012959/SRR2001365/SRR2001365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Maf:01	TARGET-52-PAWFWK-10A-01D.format_1.3.dna_normal.maf.txt	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-10A-01D	DNA	EFO	SRS924763	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-10A-01D A47599 library	PAIRED	GENOMIC	WGS	RANDOM	507	A47599	SRX1012959	"WGS analysis of normal sample TARGET-52-PAWFWK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2014-12-11	TARGET-52-PAWFWK-10A-01D A47599 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.61.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A47599_2_lanes_dupsFlagged.bam	SRR2001365	@dbgap@:reads/SRP012005/SRS924763/SRX1012959/SRR2001365/SRR2001365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Maf:01	TARGET-52-PAWFWK-01A-01D_TARGET-52-PAWFWK-10A-01D.format_1.3.somatic.maf.txt	3
